Job ID = 5721050 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2020-04-15T18:54:52 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T19:25:24 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T19:25:24 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T19:25:24 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T19:30:13 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) spots read : 25,247,613 reads read : 50,495,226 reads written : 50,495,226 rm: cannot remove ‘[DSE]RR*’: No such file or directory fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:59:12 25247613 reads; of these: 25247613 (100.00%) were paired; of these: 4082062 (16.17%) aligned concordantly 0 times 18084934 (71.63%) aligned concordantly exactly 1 time 3080617 (12.20%) aligned concordantly >1 times ---- 4082062 pairs aligned concordantly 0 times; of these: 1858503 (45.53%) aligned discordantly 1 time ---- 2223559 pairs aligned 0 times concordantly or discordantly; of these: 4447118 mates make up the pairs; of these: 2905355 (65.33%) aligned 0 times 838675 (18.86%) aligned exactly 1 time 703088 (15.81%) aligned >1 times 94.25% overall alignment rate Time searching: 00:59:12 Overall time: 00:59:12 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 36 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 3356134 / 22946716 = 0.1463 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Thu, 16 Apr 2020 06:00:37: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX6386783/SRX6386783.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX6386783/SRX6386783.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX6386783/SRX6386783.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX6386783/SRX6386783.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Thu, 16 Apr 2020 06:00:37: #1 read tag files... INFO @ Thu, 16 Apr 2020 06:00:37: #1 read treatment tags... INFO @ Thu, 16 Apr 2020 06:00:47: 1000000 INFO @ Thu, 16 Apr 2020 06:00:57: 2000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Thu, 16 Apr 2020 06:01:07: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX6386783/SRX6386783.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX6386783/SRX6386783.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX6386783/SRX6386783.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX6386783/SRX6386783.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Thu, 16 Apr 2020 06:01:07: #1 read tag files... INFO @ Thu, 16 Apr 2020 06:01:07: #1 read treatment tags... INFO @ Thu, 16 Apr 2020 06:01:08: 3000000 INFO @ Thu, 16 Apr 2020 06:01:19: 4000000 INFO @ Thu, 16 Apr 2020 06:01:19: 1000000 INFO @ Thu, 16 Apr 2020 06:01:30: 5000000 INFO @ Thu, 16 Apr 2020 06:01:30: 2000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Thu, 16 Apr 2020 06:01:37: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX6386783/SRX6386783.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX6386783/SRX6386783.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX6386783/SRX6386783.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX6386783/SRX6386783.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Thu, 16 Apr 2020 06:01:37: #1 read tag files... INFO @ Thu, 16 Apr 2020 06:01:37: #1 read treatment tags... INFO @ Thu, 16 Apr 2020 06:01:42: 6000000 INFO @ Thu, 16 Apr 2020 06:01:42: 3000000 INFO @ Thu, 16 Apr 2020 06:01:49: 1000000 INFO @ Thu, 16 Apr 2020 06:01:53: 7000000 INFO @ Thu, 16 Apr 2020 06:01:54: 4000000 INFO @ Thu, 16 Apr 2020 06:02:01: 2000000 INFO @ Thu, 16 Apr 2020 06:02:06: 8000000 INFO @ Thu, 16 Apr 2020 06:02:06: 5000000 INFO @ Thu, 16 Apr 2020 06:02:14: 3000000 INFO @ Thu, 16 Apr 2020 06:02:18: 9000000 INFO @ Thu, 16 Apr 2020 06:02:19: 6000000 INFO @ Thu, 16 Apr 2020 06:02:27: 4000000 INFO @ Thu, 16 Apr 2020 06:02:30: 10000000 INFO @ Thu, 16 Apr 2020 06:02:31: 7000000 INFO @ Thu, 16 Apr 2020 06:02:40: 5000000 INFO @ Thu, 16 Apr 2020 06:02:42: 11000000 INFO @ Thu, 16 Apr 2020 06:02:43: 8000000 INFO @ Thu, 16 Apr 2020 06:02:53: 6000000 INFO @ Thu, 16 Apr 2020 06:02:55: 12000000 INFO @ Thu, 16 Apr 2020 06:02:55: 9000000 INFO @ Thu, 16 Apr 2020 06:03:06: 7000000 INFO @ Thu, 16 Apr 2020 06:03:07: 10000000 INFO @ Thu, 16 Apr 2020 06:03:07: 13000000 INFO @ Thu, 16 Apr 2020 06:03:19: 11000000 INFO @ Thu, 16 Apr 2020 06:03:19: 8000000 INFO @ Thu, 16 Apr 2020 06:03:19: 14000000 INFO @ Thu, 16 Apr 2020 06:03:31: 12000000 INFO @ Thu, 16 Apr 2020 06:03:31: 15000000 INFO @ Thu, 16 Apr 2020 06:03:32: 9000000 INFO @ Thu, 16 Apr 2020 06:03:43: 13000000 INFO @ Thu, 16 Apr 2020 06:03:44: 16000000 INFO @ Thu, 16 Apr 2020 06:03:45: 10000000 INFO @ Thu, 16 Apr 2020 06:03:54: 14000000 INFO @ Thu, 16 Apr 2020 06:03:56: 17000000 INFO @ Thu, 16 Apr 2020 06:03:58: 11000000 INFO @ Thu, 16 Apr 2020 06:04:07: 15000000 INFO @ Thu, 16 Apr 2020 06:04:09: 18000000 INFO @ Thu, 16 Apr 2020 06:04:11: 12000000 INFO @ Thu, 16 Apr 2020 06:04:19: 16000000 INFO @ Thu, 16 Apr 2020 06:04:21: 19000000 INFO @ Thu, 16 Apr 2020 06:04:24: 13000000 INFO @ Thu, 16 Apr 2020 06:04:32: 17000000 INFO @ Thu, 16 Apr 2020 06:04:34: 20000000 INFO @ Thu, 16 Apr 2020 06:04:37: 14000000 INFO @ Thu, 16 Apr 2020 06:04:44: 18000000 INFO @ Thu, 16 Apr 2020 06:04:46: 21000000 INFO @ Thu, 16 Apr 2020 06:04:50: 15000000 INFO @ Thu, 16 Apr 2020 06:04:56: 19000000 INFO @ Thu, 16 Apr 2020 06:04:58: 22000000 INFO @ Thu, 16 Apr 2020 06:05:03: 16000000 INFO @ Thu, 16 Apr 2020 06:05:08: 20000000 INFO @ Thu, 16 Apr 2020 06:05:10: 23000000 INFO @ Thu, 16 Apr 2020 06:05:16: 17000000 INFO @ Thu, 16 Apr 2020 06:05:20: 21000000 INFO @ Thu, 16 Apr 2020 06:05:23: 24000000 INFO @ Thu, 16 Apr 2020 06:05:29: 18000000 INFO @ Thu, 16 Apr 2020 06:05:33: 22000000 INFO @ Thu, 16 Apr 2020 06:05:35: 25000000 INFO @ Thu, 16 Apr 2020 06:05:42: 19000000 INFO @ Thu, 16 Apr 2020 06:05:45: 23000000 INFO @ Thu, 16 Apr 2020 06:05:47: 26000000 INFO @ Thu, 16 Apr 2020 06:05:55: 20000000 INFO @ Thu, 16 Apr 2020 06:05:57: 24000000 INFO @ Thu, 16 Apr 2020 06:06:00: 27000000 INFO @ Thu, 16 Apr 2020 06:06:08: 21000000 INFO @ Thu, 16 Apr 2020 06:06:09: 25000000 INFO @ Thu, 16 Apr 2020 06:06:12: 28000000 INFO @ Thu, 16 Apr 2020 06:06:21: 22000000 INFO @ Thu, 16 Apr 2020 06:06:21: 26000000 INFO @ Thu, 16 Apr 2020 06:06:25: 29000000 INFO @ Thu, 16 Apr 2020 06:06:33: 23000000 INFO @ Thu, 16 Apr 2020 06:06:33: 27000000 INFO @ Thu, 16 Apr 2020 06:06:38: 30000000 INFO @ Thu, 16 Apr 2020 06:06:45: 28000000 INFO @ Thu, 16 Apr 2020 06:06:46: 24000000 INFO @ Thu, 16 Apr 2020 06:06:50: 31000000 INFO @ Thu, 16 Apr 2020 06:06:56: 29000000 INFO @ Thu, 16 Apr 2020 06:06:59: 25000000 INFO @ Thu, 16 Apr 2020 06:07:02: 32000000 INFO @ Thu, 16 Apr 2020 06:07:08: 30000000 INFO @ Thu, 16 Apr 2020 06:07:11: 26000000 INFO @ Thu, 16 Apr 2020 06:07:15: 33000000 INFO @ Thu, 16 Apr 2020 06:07:20: 31000000 INFO @ Thu, 16 Apr 2020 06:07:24: 27000000 INFO @ Thu, 16 Apr 2020 06:07:27: 34000000 INFO @ Thu, 16 Apr 2020 06:07:33: 32000000 INFO @ Thu, 16 Apr 2020 06:07:37: 28000000 INFO @ Thu, 16 Apr 2020 06:07:39: 35000000 INFO @ Thu, 16 Apr 2020 06:07:45: 33000000 INFO @ Thu, 16 Apr 2020 06:07:49: 29000000 INFO @ Thu, 16 Apr 2020 06:07:51: 36000000 INFO @ Thu, 16 Apr 2020 06:07:58: 34000000 INFO @ Thu, 16 Apr 2020 06:08:02: 30000000 INFO @ Thu, 16 Apr 2020 06:08:04: 37000000 INFO @ Thu, 16 Apr 2020 06:08:10: 35000000 INFO @ Thu, 16 Apr 2020 06:08:13: 31000000 INFO @ Thu, 16 Apr 2020 06:08:16: 38000000 INFO @ Thu, 16 Apr 2020 06:08:22: 36000000 INFO @ Thu, 16 Apr 2020 06:08:26: 32000000 INFO @ Thu, 16 Apr 2020 06:08:28: 39000000 INFO @ Thu, 16 Apr 2020 06:08:34: 37000000 INFO @ Thu, 16 Apr 2020 06:08:39: 33000000 INFO @ Thu, 16 Apr 2020 06:08:40: 40000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Thu, 16 Apr 2020 06:08:47: 38000000 INFO @ Thu, 16 Apr 2020 06:08:51: #1 tag size is determined as 151 bps INFO @ Thu, 16 Apr 2020 06:08:51: #1 tag size = 151 INFO @ Thu, 16 Apr 2020 06:08:51: #1 total tags in treatment: 17947424 INFO @ Thu, 16 Apr 2020 06:08:51: #1 user defined the maximum tags... INFO @ Thu, 16 Apr 2020 06:08:51: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Thu, 16 Apr 2020 06:08:51: #1 tags after filtering in treatment: 16795078 INFO @ Thu, 16 Apr 2020 06:08:51: #1 Redundant rate of treatment: 0.06 INFO @ Thu, 16 Apr 2020 06:08:51: #1 finished! INFO @ Thu, 16 Apr 2020 06:08:51: #2 Build Peak Model... INFO @ Thu, 16 Apr 2020 06:08:51: #2 looking for paired plus/minus strand peaks... INFO @ Thu, 16 Apr 2020 06:08:52: #2 number of paired peaks: 373 WARNING @ Thu, 16 Apr 2020 06:08:52: Fewer paired peaks (373) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 373 pairs to build model! INFO @ Thu, 16 Apr 2020 06:08:52: start model_add_line... INFO @ Thu, 16 Apr 2020 06:08:52: start X-correlation... INFO @ Thu, 16 Apr 2020 06:08:52: end of X-cor INFO @ Thu, 16 Apr 2020 06:08:52: #2 finished! INFO @ Thu, 16 Apr 2020 06:08:52: #2 predicted fragment length is 231 bps INFO @ Thu, 16 Apr 2020 06:08:52: #2 alternative fragment length(s) may be 231 bps INFO @ Thu, 16 Apr 2020 06:08:52: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX6386783/SRX6386783.05_model.r WARNING @ Thu, 16 Apr 2020 06:08:52: #2 Since the d (231) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Thu, 16 Apr 2020 06:08:52: #2 You may need to consider one of the other alternative d(s): 231 WARNING @ Thu, 16 Apr 2020 06:08:52: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Thu, 16 Apr 2020 06:08:52: #3 Call peaks... INFO @ Thu, 16 Apr 2020 06:08:52: #3 Pre-compute pvalue-qvalue table... INFO @ Thu, 16 Apr 2020 06:08:52: 34000000 INFO @ Thu, 16 Apr 2020 06:08:58: 39000000 INFO @ Thu, 16 Apr 2020 06:09:05: 35000000 INFO @ Thu, 16 Apr 2020 06:09:09: 40000000 INFO @ Thu, 16 Apr 2020 06:09:18: 36000000 INFO @ Thu, 16 Apr 2020 06:09:19: #1 tag size is determined as 151 bps INFO @ Thu, 16 Apr 2020 06:09:19: #1 tag size = 151 INFO @ Thu, 16 Apr 2020 06:09:19: #1 total tags in treatment: 17947424 INFO @ Thu, 16 Apr 2020 06:09:19: #1 user defined the maximum tags... INFO @ Thu, 16 Apr 2020 06:09:19: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Thu, 16 Apr 2020 06:09:19: #1 tags after filtering in treatment: 16795078 INFO @ Thu, 16 Apr 2020 06:09:19: #1 Redundant rate of treatment: 0.06 INFO @ Thu, 16 Apr 2020 06:09:19: #1 finished! INFO @ Thu, 16 Apr 2020 06:09:19: #2 Build Peak Model... INFO @ Thu, 16 Apr 2020 06:09:19: #2 looking for paired plus/minus strand peaks... INFO @ Thu, 16 Apr 2020 06:09:20: #2 number of paired peaks: 373 WARNING @ Thu, 16 Apr 2020 06:09:20: Fewer paired peaks (373) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 373 pairs to build model! INFO @ Thu, 16 Apr 2020 06:09:20: start model_add_line... INFO @ Thu, 16 Apr 2020 06:09:20: start X-correlation... INFO @ Thu, 16 Apr 2020 06:09:20: end of X-cor INFO @ Thu, 16 Apr 2020 06:09:20: #2 finished! INFO @ Thu, 16 Apr 2020 06:09:20: #2 predicted fragment length is 231 bps INFO @ Thu, 16 Apr 2020 06:09:20: #2 alternative fragment length(s) may be 231 bps INFO @ Thu, 16 Apr 2020 06:09:20: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX6386783/SRX6386783.10_model.r WARNING @ Thu, 16 Apr 2020 06:09:20: #2 Since the d (231) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Thu, 16 Apr 2020 06:09:20: #2 You may need to consider one of the other alternative d(s): 231 WARNING @ Thu, 16 Apr 2020 06:09:20: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Thu, 16 Apr 2020 06:09:20: #3 Call peaks... INFO @ Thu, 16 Apr 2020 06:09:20: #3 Pre-compute pvalue-qvalue table... INFO @ Thu, 16 Apr 2020 06:09:29: #3 Call peaks for each chromosome... INFO @ Thu, 16 Apr 2020 06:09:29: 37000000 INFO @ Thu, 16 Apr 2020 06:09:40: 38000000 INFO @ Thu, 16 Apr 2020 06:09:48: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX6386783/SRX6386783.05_peaks.xls INFO @ Thu, 16 Apr 2020 06:09:48: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX6386783/SRX6386783.05_peaks.narrowPeak INFO @ Thu, 16 Apr 2020 06:09:48: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX6386783/SRX6386783.05_summits.bed INFO @ Thu, 16 Apr 2020 06:09:48: Done! pass1 - making usageList (15 chroms): 1 millis pass2 - checking and writing primary data (6612 records, 4 fields): 7 millis CompletedMACS2peakCalling INFO @ Thu, 16 Apr 2020 06:09:51: 39000000 BigWig に変換しました。 INFO @ Thu, 16 Apr 2020 06:09:58: #3 Call peaks for each chromosome... INFO @ Thu, 16 Apr 2020 06:10:02: 40000000 INFO @ Thu, 16 Apr 2020 06:10:11: #1 tag size is determined as 151 bps INFO @ Thu, 16 Apr 2020 06:10:11: #1 tag size = 151 INFO @ Thu, 16 Apr 2020 06:10:11: #1 total tags in treatment: 17947424 INFO @ Thu, 16 Apr 2020 06:10:11: #1 user defined the maximum tags... INFO @ Thu, 16 Apr 2020 06:10:11: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Thu, 16 Apr 2020 06:10:12: #1 tags after filtering in treatment: 16795078 INFO @ Thu, 16 Apr 2020 06:10:12: #1 Redundant rate of treatment: 0.06 INFO @ Thu, 16 Apr 2020 06:10:12: #1 finished! INFO @ Thu, 16 Apr 2020 06:10:12: #2 Build Peak Model... INFO @ Thu, 16 Apr 2020 06:10:12: #2 looking for paired plus/minus strand peaks... INFO @ Thu, 16 Apr 2020 06:10:13: #2 number of paired peaks: 373 WARNING @ Thu, 16 Apr 2020 06:10:13: Fewer paired peaks (373) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 373 pairs to build model! INFO @ Thu, 16 Apr 2020 06:10:13: start model_add_line... INFO @ Thu, 16 Apr 2020 06:10:13: start X-correlation... INFO @ Thu, 16 Apr 2020 06:10:13: end of X-cor INFO @ Thu, 16 Apr 2020 06:10:13: #2 finished! INFO @ Thu, 16 Apr 2020 06:10:13: #2 predicted fragment length is 231 bps INFO @ Thu, 16 Apr 2020 06:10:13: #2 alternative fragment length(s) may be 231 bps INFO @ Thu, 16 Apr 2020 06:10:13: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX6386783/SRX6386783.20_model.r WARNING @ Thu, 16 Apr 2020 06:10:13: #2 Since the d (231) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Thu, 16 Apr 2020 06:10:13: #2 You may need to consider one of the other alternative d(s): 231 WARNING @ Thu, 16 Apr 2020 06:10:13: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Thu, 16 Apr 2020 06:10:13: #3 Call peaks... INFO @ Thu, 16 Apr 2020 06:10:13: #3 Pre-compute pvalue-qvalue table... INFO @ Thu, 16 Apr 2020 06:10:17: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX6386783/SRX6386783.10_peaks.xls INFO @ Thu, 16 Apr 2020 06:10:17: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX6386783/SRX6386783.10_peaks.narrowPeak INFO @ Thu, 16 Apr 2020 06:10:17: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX6386783/SRX6386783.10_summits.bed INFO @ Thu, 16 Apr 2020 06:10:17: Done! pass1 - making usageList (14 chroms): 1 millis pass2 - checking and writing primary data (4979 records, 4 fields): 5 millis CompletedMACS2peakCalling INFO @ Thu, 16 Apr 2020 06:10:49: #3 Call peaks for each chromosome... INFO @ Thu, 16 Apr 2020 06:11:07: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX6386783/SRX6386783.20_peaks.xls INFO @ Thu, 16 Apr 2020 06:11:07: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX6386783/SRX6386783.20_peaks.narrowPeak INFO @ Thu, 16 Apr 2020 06:11:07: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX6386783/SRX6386783.20_summits.bed INFO @ Thu, 16 Apr 2020 06:11:07: Done! pass1 - making usageList (13 chroms): 1 millis pass2 - checking and writing primary data (2911 records, 4 fields): 4 millis CompletedMACS2peakCalling