Job ID = 5720921 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2020-04-15T18:30:50 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T18:30:50 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T18:35:42 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) spots read : 44,776,108 reads read : 89,552,216 reads written : 89,552,216 rm: cannot remove ‘[DSE]RR*’: No such file or directory fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:39:19 44776108 reads; of these: 44776108 (100.00%) were paired; of these: 1250773 (2.79%) aligned concordantly 0 times 40130808 (89.63%) aligned concordantly exactly 1 time 3394527 (7.58%) aligned concordantly >1 times ---- 1250773 pairs aligned concordantly 0 times; of these: 165878 (13.26%) aligned discordantly 1 time ---- 1084895 pairs aligned 0 times concordantly or discordantly; of these: 2169790 mates make up the pairs; of these: 1323991 (61.02%) aligned 0 times 717802 (33.08%) aligned exactly 1 time 127997 (5.90%) aligned >1 times 98.52% overall alignment rate Time searching: 00:39:19 Overall time: 00:39:19 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 36 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 4294321 / 43627733 = 0.0984 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Thu, 16 Apr 2020 04:36:44: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX6354120/SRX6354120.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX6354120/SRX6354120.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX6354120/SRX6354120.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX6354120/SRX6354120.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Thu, 16 Apr 2020 04:36:44: #1 read tag files... INFO @ Thu, 16 Apr 2020 04:36:44: #1 read treatment tags... INFO @ Thu, 16 Apr 2020 04:36:50: 1000000 INFO @ Thu, 16 Apr 2020 04:36:56: 2000000 INFO @ Thu, 16 Apr 2020 04:37:02: 3000000 INFO @ Thu, 16 Apr 2020 04:37:08: 4000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Thu, 16 Apr 2020 04:37:14: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX6354120/SRX6354120.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX6354120/SRX6354120.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX6354120/SRX6354120.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX6354120/SRX6354120.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Thu, 16 Apr 2020 04:37:14: #1 read tag files... INFO @ Thu, 16 Apr 2020 04:37:14: #1 read treatment tags... INFO @ Thu, 16 Apr 2020 04:37:14: 5000000 INFO @ Thu, 16 Apr 2020 04:37:21: 1000000 INFO @ Thu, 16 Apr 2020 04:37:21: 6000000 INFO @ Thu, 16 Apr 2020 04:37:27: 7000000 INFO @ Thu, 16 Apr 2020 04:37:27: 2000000 INFO @ Thu, 16 Apr 2020 04:37:34: 8000000 INFO @ Thu, 16 Apr 2020 04:37:34: 3000000 INFO @ Thu, 16 Apr 2020 04:37:40: 9000000 INFO @ Thu, 16 Apr 2020 04:37:41: 4000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Thu, 16 Apr 2020 04:37:44: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX6354120/SRX6354120.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX6354120/SRX6354120.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX6354120/SRX6354120.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX6354120/SRX6354120.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Thu, 16 Apr 2020 04:37:44: #1 read tag files... INFO @ Thu, 16 Apr 2020 04:37:44: #1 read treatment tags... INFO @ Thu, 16 Apr 2020 04:37:47: 10000000 INFO @ Thu, 16 Apr 2020 04:37:48: 5000000 INFO @ Thu, 16 Apr 2020 04:37:51: 1000000 INFO @ Thu, 16 Apr 2020 04:37:54: 11000000 INFO @ Thu, 16 Apr 2020 04:37:55: 6000000 INFO @ Thu, 16 Apr 2020 04:37:58: 2000000 INFO @ Thu, 16 Apr 2020 04:38:01: 12000000 INFO @ Thu, 16 Apr 2020 04:38:02: 7000000 INFO @ Thu, 16 Apr 2020 04:38:05: 3000000 INFO @ Thu, 16 Apr 2020 04:38:08: 13000000 INFO @ Thu, 16 Apr 2020 04:38:09: 8000000 INFO @ Thu, 16 Apr 2020 04:38:12: 4000000 INFO @ Thu, 16 Apr 2020 04:38:15: 14000000 INFO @ Thu, 16 Apr 2020 04:38:16: 9000000 INFO @ Thu, 16 Apr 2020 04:38:19: 5000000 INFO @ Thu, 16 Apr 2020 04:38:22: 15000000 INFO @ Thu, 16 Apr 2020 04:38:23: 10000000 INFO @ Thu, 16 Apr 2020 04:38:26: 6000000 INFO @ Thu, 16 Apr 2020 04:38:29: 16000000 INFO @ Thu, 16 Apr 2020 04:38:30: 11000000 INFO @ Thu, 16 Apr 2020 04:38:33: 7000000 INFO @ Thu, 16 Apr 2020 04:38:36: 17000000 INFO @ Thu, 16 Apr 2020 04:38:37: 12000000 INFO @ Thu, 16 Apr 2020 04:38:40: 8000000 INFO @ Thu, 16 Apr 2020 04:38:43: 18000000 INFO @ Thu, 16 Apr 2020 04:38:44: 13000000 INFO @ Thu, 16 Apr 2020 04:38:47: 9000000 INFO @ Thu, 16 Apr 2020 04:38:50: 19000000 INFO @ Thu, 16 Apr 2020 04:38:51: 14000000 INFO @ Thu, 16 Apr 2020 04:38:54: 10000000 INFO @ Thu, 16 Apr 2020 04:38:56: 20000000 INFO @ Thu, 16 Apr 2020 04:38:58: 15000000 INFO @ Thu, 16 Apr 2020 04:39:01: 11000000 INFO @ Thu, 16 Apr 2020 04:39:03: 21000000 INFO @ Thu, 16 Apr 2020 04:39:05: 16000000 INFO @ Thu, 16 Apr 2020 04:39:08: 12000000 INFO @ Thu, 16 Apr 2020 04:39:10: 22000000 INFO @ Thu, 16 Apr 2020 04:39:12: 17000000 INFO @ Thu, 16 Apr 2020 04:39:15: 13000000 INFO @ Thu, 16 Apr 2020 04:39:17: 23000000 INFO @ Thu, 16 Apr 2020 04:39:19: 18000000 INFO @ Thu, 16 Apr 2020 04:39:21: 14000000 INFO @ Thu, 16 Apr 2020 04:39:24: 24000000 INFO @ Thu, 16 Apr 2020 04:39:26: 19000000 INFO @ Thu, 16 Apr 2020 04:39:28: 15000000 INFO @ Thu, 16 Apr 2020 04:39:31: 25000000 INFO @ Thu, 16 Apr 2020 04:39:33: 20000000 INFO @ Thu, 16 Apr 2020 04:39:35: 16000000 INFO @ Thu, 16 Apr 2020 04:39:38: 26000000 INFO @ Thu, 16 Apr 2020 04:39:40: 21000000 INFO @ Thu, 16 Apr 2020 04:39:42: 17000000 INFO @ Thu, 16 Apr 2020 04:39:45: 27000000 INFO @ Thu, 16 Apr 2020 04:39:47: 22000000 INFO @ Thu, 16 Apr 2020 04:39:49: 18000000 INFO @ Thu, 16 Apr 2020 04:39:52: 28000000 INFO @ Thu, 16 Apr 2020 04:39:54: 23000000 INFO @ Thu, 16 Apr 2020 04:39:57: 19000000 INFO @ Thu, 16 Apr 2020 04:40:00: 29000000 INFO @ Thu, 16 Apr 2020 04:40:01: 24000000 INFO @ Thu, 16 Apr 2020 04:40:04: 20000000 INFO @ Thu, 16 Apr 2020 04:40:07: 30000000 INFO @ Thu, 16 Apr 2020 04:40:08: 25000000 INFO @ Thu, 16 Apr 2020 04:40:10: 21000000 INFO @ Thu, 16 Apr 2020 04:40:14: 31000000 INFO @ Thu, 16 Apr 2020 04:40:15: 26000000 INFO @ Thu, 16 Apr 2020 04:40:17: 22000000 INFO @ Thu, 16 Apr 2020 04:40:20: 32000000 INFO @ Thu, 16 Apr 2020 04:40:22: 27000000 INFO @ Thu, 16 Apr 2020 04:40:24: 23000000 INFO @ Thu, 16 Apr 2020 04:40:27: 33000000 INFO @ Thu, 16 Apr 2020 04:40:29: 28000000 INFO @ Thu, 16 Apr 2020 04:40:31: 24000000 INFO @ Thu, 16 Apr 2020 04:40:34: 34000000 INFO @ Thu, 16 Apr 2020 04:40:36: 29000000 INFO @ Thu, 16 Apr 2020 04:40:38: 25000000 INFO @ Thu, 16 Apr 2020 04:40:41: 35000000 INFO @ Thu, 16 Apr 2020 04:40:43: 30000000 INFO @ Thu, 16 Apr 2020 04:40:44: 26000000 INFO @ Thu, 16 Apr 2020 04:40:48: 36000000 INFO @ Thu, 16 Apr 2020 04:40:49: 31000000 INFO @ Thu, 16 Apr 2020 04:40:51: 27000000 INFO @ Thu, 16 Apr 2020 04:40:54: 37000000 INFO @ Thu, 16 Apr 2020 04:40:56: 32000000 INFO @ Thu, 16 Apr 2020 04:40:58: 28000000 INFO @ Thu, 16 Apr 2020 04:41:01: 38000000 INFO @ Thu, 16 Apr 2020 04:41:03: 33000000 INFO @ Thu, 16 Apr 2020 04:41:05: 29000000 INFO @ Thu, 16 Apr 2020 04:41:08: 39000000 INFO @ Thu, 16 Apr 2020 04:41:10: 34000000 INFO @ Thu, 16 Apr 2020 04:41:11: 30000000 INFO @ Thu, 16 Apr 2020 04:41:15: 40000000 INFO @ Thu, 16 Apr 2020 04:41:17: 35000000 INFO @ Thu, 16 Apr 2020 04:41:18: 31000000 INFO @ Thu, 16 Apr 2020 04:41:22: 41000000 INFO @ Thu, 16 Apr 2020 04:41:24: 36000000 INFO @ Thu, 16 Apr 2020 04:41:25: 32000000 INFO @ Thu, 16 Apr 2020 04:41:28: 42000000 INFO @ Thu, 16 Apr 2020 04:41:31: 37000000 INFO @ Thu, 16 Apr 2020 04:41:32: 33000000 INFO @ Thu, 16 Apr 2020 04:41:35: 43000000 INFO @ Thu, 16 Apr 2020 04:41:38: 38000000 INFO @ Thu, 16 Apr 2020 04:41:38: 34000000 INFO @ Thu, 16 Apr 2020 04:41:42: 44000000 INFO @ Thu, 16 Apr 2020 04:41:44: 39000000 INFO @ Thu, 16 Apr 2020 04:41:45: 35000000 INFO @ Thu, 16 Apr 2020 04:41:49: 45000000 INFO @ Thu, 16 Apr 2020 04:41:51: 40000000 INFO @ Thu, 16 Apr 2020 04:41:52: 36000000 INFO @ Thu, 16 Apr 2020 04:41:55: 46000000 INFO @ Thu, 16 Apr 2020 04:41:58: 41000000 INFO @ Thu, 16 Apr 2020 04:41:59: 37000000 INFO @ Thu, 16 Apr 2020 04:42:02: 47000000 INFO @ Thu, 16 Apr 2020 04:42:05: 42000000 INFO @ Thu, 16 Apr 2020 04:42:06: 38000000 INFO @ Thu, 16 Apr 2020 04:42:09: 48000000 INFO @ Thu, 16 Apr 2020 04:42:12: 43000000 INFO @ Thu, 16 Apr 2020 04:42:13: 39000000 INFO @ Thu, 16 Apr 2020 04:42:15: 49000000 INFO @ Thu, 16 Apr 2020 04:42:19: 44000000 INFO @ Thu, 16 Apr 2020 04:42:19: 40000000 INFO @ Thu, 16 Apr 2020 04:42:22: 50000000 INFO @ Thu, 16 Apr 2020 04:42:26: 45000000 INFO @ Thu, 16 Apr 2020 04:42:26: 41000000 INFO @ Thu, 16 Apr 2020 04:42:29: 51000000 INFO @ Thu, 16 Apr 2020 04:42:32: 46000000 INFO @ Thu, 16 Apr 2020 04:42:33: 42000000 INFO @ Thu, 16 Apr 2020 04:42:36: 52000000 INFO @ Thu, 16 Apr 2020 04:42:39: 47000000 INFO @ Thu, 16 Apr 2020 04:42:40: 43000000 INFO @ Thu, 16 Apr 2020 04:42:42: 53000000 INFO @ Thu, 16 Apr 2020 04:42:46: 48000000 INFO @ Thu, 16 Apr 2020 04:42:46: 44000000 INFO @ Thu, 16 Apr 2020 04:42:49: 54000000 INFO @ Thu, 16 Apr 2020 04:42:53: 49000000 INFO @ Thu, 16 Apr 2020 04:42:53: 45000000 INFO @ Thu, 16 Apr 2020 04:42:56: 55000000 INFO @ Thu, 16 Apr 2020 04:42:59: 50000000 INFO @ Thu, 16 Apr 2020 04:43:00: 46000000 INFO @ Thu, 16 Apr 2020 04:43:02: 56000000 INFO @ Thu, 16 Apr 2020 04:43:06: 51000000 INFO @ Thu, 16 Apr 2020 04:43:06: 47000000 INFO @ Thu, 16 Apr 2020 04:43:09: 57000000 INFO @ Thu, 16 Apr 2020 04:43:13: 48000000 INFO @ Thu, 16 Apr 2020 04:43:13: 52000000 INFO @ Thu, 16 Apr 2020 04:43:16: 58000000 INFO @ Thu, 16 Apr 2020 04:43:20: 49000000 INFO @ Thu, 16 Apr 2020 04:43:20: 53000000 INFO @ Thu, 16 Apr 2020 04:43:22: 59000000 INFO @ Thu, 16 Apr 2020 04:43:26: 50000000 INFO @ Thu, 16 Apr 2020 04:43:26: 54000000 INFO @ Thu, 16 Apr 2020 04:43:29: 60000000 INFO @ Thu, 16 Apr 2020 04:43:33: 51000000 INFO @ Thu, 16 Apr 2020 04:43:33: 55000000 INFO @ Thu, 16 Apr 2020 04:43:36: 61000000 INFO @ Thu, 16 Apr 2020 04:43:40: 52000000 INFO @ Thu, 16 Apr 2020 04:43:40: 56000000 INFO @ Thu, 16 Apr 2020 04:43:42: 62000000 INFO @ Thu, 16 Apr 2020 04:43:46: 53000000 INFO @ Thu, 16 Apr 2020 04:43:47: 57000000 INFO @ Thu, 16 Apr 2020 04:43:49: 63000000 INFO @ Thu, 16 Apr 2020 04:43:53: 54000000 INFO @ Thu, 16 Apr 2020 04:43:54: 58000000 INFO @ Thu, 16 Apr 2020 04:43:56: 64000000 INFO @ Thu, 16 Apr 2020 04:44:00: 55000000 INFO @ Thu, 16 Apr 2020 04:44:00: 59000000 INFO @ Thu, 16 Apr 2020 04:44:03: 65000000 INFO @ Thu, 16 Apr 2020 04:44:06: 56000000 INFO @ Thu, 16 Apr 2020 04:44:07: 60000000 INFO @ Thu, 16 Apr 2020 04:44:09: 66000000 INFO @ Thu, 16 Apr 2020 04:44:13: 57000000 INFO @ Thu, 16 Apr 2020 04:44:14: 61000000 INFO @ Thu, 16 Apr 2020 04:44:16: 67000000 INFO @ Thu, 16 Apr 2020 04:44:20: 58000000 INFO @ Thu, 16 Apr 2020 04:44:21: 62000000 INFO @ Thu, 16 Apr 2020 04:44:23: 68000000 INFO @ Thu, 16 Apr 2020 04:44:26: 59000000 INFO @ Thu, 16 Apr 2020 04:44:28: 63000000 INFO @ Thu, 16 Apr 2020 04:44:29: 69000000 INFO @ Thu, 16 Apr 2020 04:44:33: 60000000 INFO @ Thu, 16 Apr 2020 04:44:35: 64000000 INFO @ Thu, 16 Apr 2020 04:44:36: 70000000 INFO @ Thu, 16 Apr 2020 04:44:39: 61000000 INFO @ Thu, 16 Apr 2020 04:44:41: 65000000 INFO @ Thu, 16 Apr 2020 04:44:43: 71000000 INFO @ Thu, 16 Apr 2020 04:44:46: 62000000 INFO @ Thu, 16 Apr 2020 04:44:48: 66000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Thu, 16 Apr 2020 04:44:50: 72000000 INFO @ Thu, 16 Apr 2020 04:44:53: 63000000 INFO @ Thu, 16 Apr 2020 04:44:55: 67000000 INFO @ Thu, 16 Apr 2020 04:44:57: 73000000 INFO @ Thu, 16 Apr 2020 04:45:00: 64000000 INFO @ Thu, 16 Apr 2020 04:45:02: 68000000 INFO @ Thu, 16 Apr 2020 04:45:03: 74000000 INFO @ Thu, 16 Apr 2020 04:45:06: 65000000 INFO @ Thu, 16 Apr 2020 04:45:08: 69000000 INFO @ Thu, 16 Apr 2020 04:45:10: 75000000 INFO @ Thu, 16 Apr 2020 04:45:13: 66000000 INFO @ Thu, 16 Apr 2020 04:45:15: 70000000 INFO @ Thu, 16 Apr 2020 04:45:17: 76000000 INFO @ Thu, 16 Apr 2020 04:45:20: 67000000 INFO @ Thu, 16 Apr 2020 04:45:22: 71000000 INFO @ Thu, 16 Apr 2020 04:45:24: 77000000 INFO @ Thu, 16 Apr 2020 04:45:26: 68000000 INFO @ Thu, 16 Apr 2020 04:45:29: 72000000 INFO @ Thu, 16 Apr 2020 04:45:30: 78000000 INFO @ Thu, 16 Apr 2020 04:45:33: 69000000 INFO @ Thu, 16 Apr 2020 04:45:35: 73000000 INFO @ Thu, 16 Apr 2020 04:45:37: 79000000 INFO @ Thu, 16 Apr 2020 04:45:39: 70000000 INFO @ Thu, 16 Apr 2020 04:45:41: #1 tag size is determined as 50 bps INFO @ Thu, 16 Apr 2020 04:45:41: #1 tag size = 50 INFO @ Thu, 16 Apr 2020 04:45:41: #1 total tags in treatment: 39234357 INFO @ Thu, 16 Apr 2020 04:45:41: #1 user defined the maximum tags... INFO @ Thu, 16 Apr 2020 04:45:41: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Thu, 16 Apr 2020 04:45:42: 74000000 INFO @ Thu, 16 Apr 2020 04:45:42: #1 tags after filtering in treatment: 24373016 INFO @ Thu, 16 Apr 2020 04:45:42: #1 Redundant rate of treatment: 0.38 INFO @ Thu, 16 Apr 2020 04:45:42: #1 finished! INFO @ Thu, 16 Apr 2020 04:45:42: #2 Build Peak Model... INFO @ Thu, 16 Apr 2020 04:45:42: #2 looking for paired plus/minus strand peaks... INFO @ Thu, 16 Apr 2020 04:45:44: #2 number of paired peaks: 7146 INFO @ Thu, 16 Apr 2020 04:45:44: start model_add_line... INFO @ Thu, 16 Apr 2020 04:45:45: start X-correlation... INFO @ Thu, 16 Apr 2020 04:45:45: end of X-cor INFO @ Thu, 16 Apr 2020 04:45:45: #2 finished! INFO @ Thu, 16 Apr 2020 04:45:45: #2 predicted fragment length is 135 bps INFO @ Thu, 16 Apr 2020 04:45:45: #2 alternative fragment length(s) may be 135 bps INFO @ Thu, 16 Apr 2020 04:45:45: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX6354120/SRX6354120.05_model.r INFO @ Thu, 16 Apr 2020 04:45:45: #3 Call peaks... INFO @ Thu, 16 Apr 2020 04:45:45: #3 Pre-compute pvalue-qvalue table... INFO @ Thu, 16 Apr 2020 04:45:46: 71000000 INFO @ Thu, 16 Apr 2020 04:45:49: 75000000 BigWig に変換しました。 INFO @ Thu, 16 Apr 2020 04:45:52: 72000000 INFO @ Thu, 16 Apr 2020 04:45:55: 76000000 INFO @ Thu, 16 Apr 2020 04:45:59: 73000000 INFO @ Thu, 16 Apr 2020 04:46:02: 77000000 INFO @ Thu, 16 Apr 2020 04:46:05: 74000000 INFO @ Thu, 16 Apr 2020 04:46:08: 78000000 INFO @ Thu, 16 Apr 2020 04:46:12: 75000000 INFO @ Thu, 16 Apr 2020 04:46:15: 79000000 INFO @ Thu, 16 Apr 2020 04:46:18: 76000000 INFO @ Thu, 16 Apr 2020 04:46:19: #1 tag size is determined as 50 bps INFO @ Thu, 16 Apr 2020 04:46:19: #1 tag size = 50 INFO @ Thu, 16 Apr 2020 04:46:19: #1 total tags in treatment: 39234357 INFO @ Thu, 16 Apr 2020 04:46:19: #1 user defined the maximum tags... INFO @ Thu, 16 Apr 2020 04:46:19: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Thu, 16 Apr 2020 04:46:20: #1 tags after filtering in treatment: 24373016 INFO @ Thu, 16 Apr 2020 04:46:20: #1 Redundant rate of treatment: 0.38 INFO @ Thu, 16 Apr 2020 04:46:20: #1 finished! INFO @ Thu, 16 Apr 2020 04:46:20: #2 Build Peak Model... INFO @ Thu, 16 Apr 2020 04:46:20: #2 looking for paired plus/minus strand peaks... INFO @ Thu, 16 Apr 2020 04:46:22: #2 number of paired peaks: 7146 INFO @ Thu, 16 Apr 2020 04:46:22: start model_add_line... INFO @ Thu, 16 Apr 2020 04:46:23: start X-correlation... INFO @ Thu, 16 Apr 2020 04:46:23: end of X-cor INFO @ Thu, 16 Apr 2020 04:46:23: #2 finished! INFO @ Thu, 16 Apr 2020 04:46:23: #2 predicted fragment length is 135 bps INFO @ Thu, 16 Apr 2020 04:46:23: #2 alternative fragment length(s) may be 135 bps INFO @ Thu, 16 Apr 2020 04:46:23: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX6354120/SRX6354120.10_model.r INFO @ Thu, 16 Apr 2020 04:46:23: #3 Call peaks... INFO @ Thu, 16 Apr 2020 04:46:23: #3 Pre-compute pvalue-qvalue table... INFO @ Thu, 16 Apr 2020 04:46:25: 77000000 INFO @ Thu, 16 Apr 2020 04:46:31: 78000000 INFO @ Thu, 16 Apr 2020 04:46:37: 79000000 INFO @ Thu, 16 Apr 2020 04:46:38: #3 Call peaks for each chromosome... INFO @ Thu, 16 Apr 2020 04:46:41: #1 tag size is determined as 50 bps INFO @ Thu, 16 Apr 2020 04:46:41: #1 tag size = 50 INFO @ Thu, 16 Apr 2020 04:46:41: #1 total tags in treatment: 39234357 INFO @ Thu, 16 Apr 2020 04:46:41: #1 user defined the maximum tags... INFO @ Thu, 16 Apr 2020 04:46:41: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Thu, 16 Apr 2020 04:46:42: #1 tags after filtering in treatment: 24373016 INFO @ Thu, 16 Apr 2020 04:46:42: #1 Redundant rate of treatment: 0.38 INFO @ Thu, 16 Apr 2020 04:46:42: #1 finished! INFO @ Thu, 16 Apr 2020 04:46:42: #2 Build Peak Model... INFO @ Thu, 16 Apr 2020 04:46:42: #2 looking for paired plus/minus strand peaks... INFO @ Thu, 16 Apr 2020 04:46:44: #2 number of paired peaks: 7146 INFO @ Thu, 16 Apr 2020 04:46:44: start model_add_line... INFO @ Thu, 16 Apr 2020 04:46:44: start X-correlation... INFO @ Thu, 16 Apr 2020 04:46:44: end of X-cor INFO @ Thu, 16 Apr 2020 04:46:44: #2 finished! INFO @ Thu, 16 Apr 2020 04:46:44: #2 predicted fragment length is 135 bps INFO @ Thu, 16 Apr 2020 04:46:44: #2 alternative fragment length(s) may be 135 bps INFO @ Thu, 16 Apr 2020 04:46:44: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX6354120/SRX6354120.20_model.r INFO @ Thu, 16 Apr 2020 04:46:44: #3 Call peaks... INFO @ Thu, 16 Apr 2020 04:46:44: #3 Pre-compute pvalue-qvalue table... INFO @ Thu, 16 Apr 2020 04:47:01: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX6354120/SRX6354120.05_peaks.xls INFO @ Thu, 16 Apr 2020 04:47:01: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX6354120/SRX6354120.05_peaks.narrowPeak INFO @ Thu, 16 Apr 2020 04:47:01: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX6354120/SRX6354120.05_summits.bed INFO @ Thu, 16 Apr 2020 04:47:01: Done! pass1 - making usageList (14 chroms): 3 millis pass2 - checking and writing primary data (13966 records, 4 fields): 13 millis CompletedMACS2peakCalling INFO @ Thu, 16 Apr 2020 04:47:15: #3 Call peaks for each chromosome... INFO @ Thu, 16 Apr 2020 04:47:36: #3 Call peaks for each chromosome... INFO @ Thu, 16 Apr 2020 04:47:37: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX6354120/SRX6354120.10_peaks.xls INFO @ Thu, 16 Apr 2020 04:47:37: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX6354120/SRX6354120.10_peaks.narrowPeak INFO @ Thu, 16 Apr 2020 04:47:37: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX6354120/SRX6354120.10_summits.bed INFO @ Thu, 16 Apr 2020 04:47:37: Done! pass1 - making usageList (14 chroms): 1 millis pass2 - checking and writing primary data (10226 records, 4 fields): 11 millis CompletedMACS2peakCalling INFO @ Thu, 16 Apr 2020 04:47:58: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX6354120/SRX6354120.20_peaks.xls INFO @ Thu, 16 Apr 2020 04:47:58: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX6354120/SRX6354120.20_peaks.narrowPeak INFO @ Thu, 16 Apr 2020 04:47:58: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX6354120/SRX6354120.20_summits.bed INFO @ Thu, 16 Apr 2020 04:47:58: Done! pass1 - making usageList (13 chroms): 1 millis pass2 - checking and writing primary data (7887 records, 4 fields): 9 millis CompletedMACS2peakCalling