Job ID = 5720918 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... spots read : 48,965,446 reads read : 97,930,892 reads written : 97,930,892 rm: cannot remove ‘[DSE]RR*’: No such file or directory fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:51:29 48965446 reads; of these: 48965446 (100.00%) were paired; of these: 1654061 (3.38%) aligned concordantly 0 times 42038851 (85.85%) aligned concordantly exactly 1 time 5272534 (10.77%) aligned concordantly >1 times ---- 1654061 pairs aligned concordantly 0 times; of these: 191282 (11.56%) aligned discordantly 1 time ---- 1462779 pairs aligned 0 times concordantly or discordantly; of these: 2925558 mates make up the pairs; of these: 1820642 (62.23%) aligned 0 times 906277 (30.98%) aligned exactly 1 time 198639 (6.79%) aligned >1 times 98.14% overall alignment rate Time searching: 00:51:29 Overall time: 00:51:29 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 40 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 4233974 / 47417536 = 0.0893 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Thu, 16 Apr 2020 04:49:41: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX6354117/SRX6354117.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX6354117/SRX6354117.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX6354117/SRX6354117.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX6354117/SRX6354117.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Thu, 16 Apr 2020 04:49:41: #1 read tag files... INFO @ Thu, 16 Apr 2020 04:49:41: #1 read treatment tags... INFO @ Thu, 16 Apr 2020 04:49:46: 1000000 INFO @ Thu, 16 Apr 2020 04:49:50: 2000000 INFO @ Thu, 16 Apr 2020 04:49:54: 3000000 INFO @ Thu, 16 Apr 2020 04:49:58: 4000000 INFO @ Thu, 16 Apr 2020 04:50:03: 5000000 INFO @ Thu, 16 Apr 2020 04:50:07: 6000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Thu, 16 Apr 2020 04:50:11: 7000000 INFO @ Thu, 16 Apr 2020 04:50:11: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX6354117/SRX6354117.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX6354117/SRX6354117.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX6354117/SRX6354117.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX6354117/SRX6354117.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Thu, 16 Apr 2020 04:50:11: #1 read tag files... INFO @ Thu, 16 Apr 2020 04:50:11: #1 read treatment tags... INFO @ Thu, 16 Apr 2020 04:50:15: 8000000 INFO @ Thu, 16 Apr 2020 04:50:16: 1000000 INFO @ Thu, 16 Apr 2020 04:50:20: 9000000 INFO @ Thu, 16 Apr 2020 04:50:20: 2000000 INFO @ Thu, 16 Apr 2020 04:50:24: 10000000 INFO @ Thu, 16 Apr 2020 04:50:25: 3000000 INFO @ Thu, 16 Apr 2020 04:50:29: 11000000 INFO @ Thu, 16 Apr 2020 04:50:29: 4000000 INFO @ Thu, 16 Apr 2020 04:50:33: 12000000 INFO @ Thu, 16 Apr 2020 04:50:34: 5000000 INFO @ Thu, 16 Apr 2020 04:50:37: 13000000 INFO @ Thu, 16 Apr 2020 04:50:38: 6000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Thu, 16 Apr 2020 04:50:41: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX6354117/SRX6354117.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX6354117/SRX6354117.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX6354117/SRX6354117.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX6354117/SRX6354117.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Thu, 16 Apr 2020 04:50:41: #1 read tag files... INFO @ Thu, 16 Apr 2020 04:50:41: #1 read treatment tags... INFO @ Thu, 16 Apr 2020 04:50:42: 14000000 INFO @ Thu, 16 Apr 2020 04:50:43: 7000000 INFO @ Thu, 16 Apr 2020 04:50:46: 15000000 INFO @ Thu, 16 Apr 2020 04:50:46: 1000000 INFO @ Thu, 16 Apr 2020 04:50:47: 8000000 INFO @ Thu, 16 Apr 2020 04:50:51: 16000000 INFO @ Thu, 16 Apr 2020 04:50:51: 2000000 INFO @ Thu, 16 Apr 2020 04:50:52: 9000000 INFO @ Thu, 16 Apr 2020 04:50:55: 17000000 INFO @ Thu, 16 Apr 2020 04:50:55: 3000000 INFO @ Thu, 16 Apr 2020 04:50:56: 10000000 INFO @ Thu, 16 Apr 2020 04:50:59: 18000000 INFO @ Thu, 16 Apr 2020 04:51:00: 4000000 INFO @ Thu, 16 Apr 2020 04:51:01: 11000000 INFO @ Thu, 16 Apr 2020 04:51:04: 19000000 INFO @ Thu, 16 Apr 2020 04:51:04: 5000000 INFO @ Thu, 16 Apr 2020 04:51:05: 12000000 INFO @ Thu, 16 Apr 2020 04:51:08: 20000000 INFO @ Thu, 16 Apr 2020 04:51:09: 6000000 INFO @ Thu, 16 Apr 2020 04:51:10: 13000000 INFO @ Thu, 16 Apr 2020 04:51:12: 21000000 INFO @ Thu, 16 Apr 2020 04:51:13: 7000000 INFO @ Thu, 16 Apr 2020 04:51:14: 14000000 INFO @ Thu, 16 Apr 2020 04:51:17: 22000000 INFO @ Thu, 16 Apr 2020 04:51:18: 8000000 INFO @ Thu, 16 Apr 2020 04:51:18: 15000000 INFO @ Thu, 16 Apr 2020 04:51:21: 23000000 INFO @ Thu, 16 Apr 2020 04:51:22: 9000000 INFO @ Thu, 16 Apr 2020 04:51:23: 16000000 INFO @ Thu, 16 Apr 2020 04:51:26: 24000000 INFO @ Thu, 16 Apr 2020 04:51:27: 10000000 INFO @ Thu, 16 Apr 2020 04:51:27: 17000000 INFO @ Thu, 16 Apr 2020 04:51:30: 25000000 INFO @ Thu, 16 Apr 2020 04:51:31: 11000000 INFO @ Thu, 16 Apr 2020 04:51:32: 18000000 INFO @ Thu, 16 Apr 2020 04:51:34: 26000000 INFO @ Thu, 16 Apr 2020 04:51:36: 12000000 INFO @ Thu, 16 Apr 2020 04:51:36: 19000000 INFO @ Thu, 16 Apr 2020 04:51:39: 27000000 INFO @ Thu, 16 Apr 2020 04:51:40: 13000000 INFO @ Thu, 16 Apr 2020 04:51:41: 20000000 INFO @ Thu, 16 Apr 2020 04:51:43: 28000000 INFO @ Thu, 16 Apr 2020 04:51:44: 14000000 INFO @ Thu, 16 Apr 2020 04:51:45: 21000000 INFO @ Thu, 16 Apr 2020 04:51:48: 29000000 INFO @ Thu, 16 Apr 2020 04:51:49: 15000000 INFO @ Thu, 16 Apr 2020 04:51:49: 22000000 INFO @ Thu, 16 Apr 2020 04:51:52: 30000000 INFO @ Thu, 16 Apr 2020 04:51:53: 16000000 INFO @ Thu, 16 Apr 2020 04:51:54: 23000000 INFO @ Thu, 16 Apr 2020 04:51:56: 31000000 INFO @ Thu, 16 Apr 2020 04:51:58: 17000000 INFO @ Thu, 16 Apr 2020 04:51:58: 24000000 INFO @ Thu, 16 Apr 2020 04:52:01: 32000000 INFO @ Thu, 16 Apr 2020 04:52:02: 18000000 INFO @ Thu, 16 Apr 2020 04:52:03: 25000000 INFO @ Thu, 16 Apr 2020 04:52:05: 33000000 INFO @ Thu, 16 Apr 2020 04:52:06: 19000000 INFO @ Thu, 16 Apr 2020 04:52:07: 26000000 INFO @ Thu, 16 Apr 2020 04:52:10: 34000000 INFO @ Thu, 16 Apr 2020 04:52:11: 20000000 INFO @ Thu, 16 Apr 2020 04:52:11: 27000000 INFO @ Thu, 16 Apr 2020 04:52:14: 35000000 INFO @ Thu, 16 Apr 2020 04:52:15: 21000000 INFO @ Thu, 16 Apr 2020 04:52:16: 28000000 INFO @ Thu, 16 Apr 2020 04:52:18: 36000000 INFO @ Thu, 16 Apr 2020 04:52:19: 22000000 INFO @ Thu, 16 Apr 2020 04:52:20: 29000000 INFO @ Thu, 16 Apr 2020 04:52:23: 37000000 INFO @ Thu, 16 Apr 2020 04:52:24: 23000000 INFO @ Thu, 16 Apr 2020 04:52:24: 30000000 INFO @ Thu, 16 Apr 2020 04:52:27: 38000000 INFO @ Thu, 16 Apr 2020 04:52:28: 24000000 INFO @ Thu, 16 Apr 2020 04:52:29: 31000000 INFO @ Thu, 16 Apr 2020 04:52:31: 39000000 INFO @ Thu, 16 Apr 2020 04:52:32: 25000000 INFO @ Thu, 16 Apr 2020 04:52:33: 32000000 INFO @ Thu, 16 Apr 2020 04:52:36: 40000000 INFO @ Thu, 16 Apr 2020 04:52:37: 26000000 INFO @ Thu, 16 Apr 2020 04:52:38: 33000000 INFO @ Thu, 16 Apr 2020 04:52:40: 41000000 INFO @ Thu, 16 Apr 2020 04:52:41: 27000000 INFO @ Thu, 16 Apr 2020 04:52:42: 34000000 INFO @ Thu, 16 Apr 2020 04:52:44: 42000000 INFO @ Thu, 16 Apr 2020 04:52:46: 28000000 INFO @ Thu, 16 Apr 2020 04:52:46: 35000000 INFO @ Thu, 16 Apr 2020 04:52:48: 43000000 INFO @ Thu, 16 Apr 2020 04:52:50: 29000000 INFO @ Thu, 16 Apr 2020 04:52:51: 36000000 INFO @ Thu, 16 Apr 2020 04:52:53: 44000000 INFO @ Thu, 16 Apr 2020 04:52:54: 30000000 INFO @ Thu, 16 Apr 2020 04:52:55: 37000000 INFO @ Thu, 16 Apr 2020 04:52:57: 45000000 INFO @ Thu, 16 Apr 2020 04:52:59: 31000000 INFO @ Thu, 16 Apr 2020 04:52:59: 38000000 INFO @ Thu, 16 Apr 2020 04:53:01: 46000000 INFO @ Thu, 16 Apr 2020 04:53:03: 32000000 INFO @ Thu, 16 Apr 2020 04:53:04: 39000000 INFO @ Thu, 16 Apr 2020 04:53:06: 47000000 INFO @ Thu, 16 Apr 2020 04:53:07: 33000000 INFO @ Thu, 16 Apr 2020 04:53:08: 40000000 INFO @ Thu, 16 Apr 2020 04:53:10: 48000000 INFO @ Thu, 16 Apr 2020 04:53:12: 34000000 INFO @ Thu, 16 Apr 2020 04:53:12: 41000000 INFO @ Thu, 16 Apr 2020 04:53:14: 49000000 INFO @ Thu, 16 Apr 2020 04:53:16: 35000000 INFO @ Thu, 16 Apr 2020 04:53:17: 42000000 INFO @ Thu, 16 Apr 2020 04:53:18: 50000000 INFO @ Thu, 16 Apr 2020 04:53:20: 36000000 INFO @ Thu, 16 Apr 2020 04:53:21: 43000000 INFO @ Thu, 16 Apr 2020 04:53:23: 51000000 INFO @ Thu, 16 Apr 2020 04:53:25: 37000000 INFO @ Thu, 16 Apr 2020 04:53:25: 44000000 INFO @ Thu, 16 Apr 2020 04:53:27: 52000000 INFO @ Thu, 16 Apr 2020 04:53:29: 38000000 INFO @ Thu, 16 Apr 2020 04:53:29: 45000000 INFO @ Thu, 16 Apr 2020 04:53:31: 53000000 INFO @ Thu, 16 Apr 2020 04:53:33: 39000000 INFO @ Thu, 16 Apr 2020 04:53:34: 46000000 INFO @ Thu, 16 Apr 2020 04:53:35: 54000000 INFO @ Thu, 16 Apr 2020 04:53:37: 40000000 INFO @ Thu, 16 Apr 2020 04:53:38: 47000000 INFO @ Thu, 16 Apr 2020 04:53:40: 55000000 INFO @ Thu, 16 Apr 2020 04:53:42: 41000000 INFO @ Thu, 16 Apr 2020 04:53:42: 48000000 INFO @ Thu, 16 Apr 2020 04:53:44: 56000000 INFO @ Thu, 16 Apr 2020 04:53:46: 42000000 INFO @ Thu, 16 Apr 2020 04:53:47: 49000000 INFO @ Thu, 16 Apr 2020 04:53:48: 57000000 INFO @ Thu, 16 Apr 2020 04:53:50: 43000000 INFO @ Thu, 16 Apr 2020 04:53:51: 50000000 INFO @ Thu, 16 Apr 2020 04:53:52: 58000000 INFO @ Thu, 16 Apr 2020 04:53:55: 44000000 INFO @ Thu, 16 Apr 2020 04:53:55: 51000000 INFO @ Thu, 16 Apr 2020 04:53:57: 59000000 INFO @ Thu, 16 Apr 2020 04:53:59: 45000000 INFO @ Thu, 16 Apr 2020 04:53:59: 52000000 INFO @ Thu, 16 Apr 2020 04:54:01: 60000000 INFO @ Thu, 16 Apr 2020 04:54:03: 46000000 INFO @ Thu, 16 Apr 2020 04:54:04: 53000000 INFO @ Thu, 16 Apr 2020 04:54:05: 61000000 INFO @ Thu, 16 Apr 2020 04:54:08: 47000000 INFO @ Thu, 16 Apr 2020 04:54:08: 54000000 INFO @ Thu, 16 Apr 2020 04:54:09: 62000000 INFO @ Thu, 16 Apr 2020 04:54:12: 48000000 INFO @ Thu, 16 Apr 2020 04:54:12: 55000000 INFO @ Thu, 16 Apr 2020 04:54:14: 63000000 INFO @ Thu, 16 Apr 2020 04:54:16: 49000000 INFO @ Thu, 16 Apr 2020 04:54:16: 56000000 INFO @ Thu, 16 Apr 2020 04:54:18: 64000000 INFO @ Thu, 16 Apr 2020 04:54:20: 50000000 INFO @ Thu, 16 Apr 2020 04:54:21: 57000000 INFO @ Thu, 16 Apr 2020 04:54:22: 65000000 INFO @ Thu, 16 Apr 2020 04:54:25: 51000000 INFO @ Thu, 16 Apr 2020 04:54:25: 58000000 INFO @ Thu, 16 Apr 2020 04:54:27: 66000000 INFO @ Thu, 16 Apr 2020 04:54:29: 52000000 INFO @ Thu, 16 Apr 2020 04:54:29: 59000000 INFO @ Thu, 16 Apr 2020 04:54:31: 67000000 INFO @ Thu, 16 Apr 2020 04:54:33: 53000000 INFO @ Thu, 16 Apr 2020 04:54:34: 60000000 INFO @ Thu, 16 Apr 2020 04:54:35: 68000000 INFO @ Thu, 16 Apr 2020 04:54:37: 54000000 INFO @ Thu, 16 Apr 2020 04:54:38: 61000000 INFO @ Thu, 16 Apr 2020 04:54:39: 69000000 INFO @ Thu, 16 Apr 2020 04:54:41: 55000000 INFO @ Thu, 16 Apr 2020 04:54:42: 62000000 INFO @ Thu, 16 Apr 2020 04:54:44: 70000000 INFO @ Thu, 16 Apr 2020 04:54:46: 56000000 INFO @ Thu, 16 Apr 2020 04:54:46: 63000000 INFO @ Thu, 16 Apr 2020 04:54:48: 71000000 INFO @ Thu, 16 Apr 2020 04:54:50: 57000000 INFO @ Thu, 16 Apr 2020 04:54:50: 64000000 INFO @ Thu, 16 Apr 2020 04:54:52: 72000000 INFO @ Thu, 16 Apr 2020 04:54:54: 58000000 INFO @ Thu, 16 Apr 2020 04:54:55: 65000000 INFO @ Thu, 16 Apr 2020 04:54:57: 73000000 INFO @ Thu, 16 Apr 2020 04:54:58: 59000000 INFO @ Thu, 16 Apr 2020 04:54:59: 66000000 INFO @ Thu, 16 Apr 2020 04:55:01: 74000000 INFO @ Thu, 16 Apr 2020 04:55:03: 60000000 INFO @ Thu, 16 Apr 2020 04:55:03: 67000000 INFO @ Thu, 16 Apr 2020 04:55:05: 75000000 INFO @ Thu, 16 Apr 2020 04:55:07: 61000000 INFO @ Thu, 16 Apr 2020 04:55:08: 68000000 INFO @ Thu, 16 Apr 2020 04:55:10: 76000000 INFO @ Thu, 16 Apr 2020 04:55:11: 62000000 INFO @ Thu, 16 Apr 2020 04:55:12: 69000000 INFO @ Thu, 16 Apr 2020 04:55:14: 77000000 INFO @ Thu, 16 Apr 2020 04:55:15: 63000000 INFO @ Thu, 16 Apr 2020 04:55:16: 70000000 INFO @ Thu, 16 Apr 2020 04:55:18: 78000000 INFO @ Thu, 16 Apr 2020 04:55:20: 64000000 INFO @ Thu, 16 Apr 2020 04:55:20: 71000000 INFO @ Thu, 16 Apr 2020 04:55:23: 79000000 INFO @ Thu, 16 Apr 2020 04:55:24: 65000000 INFO @ Thu, 16 Apr 2020 04:55:25: 72000000 INFO @ Thu, 16 Apr 2020 04:55:27: 80000000 INFO @ Thu, 16 Apr 2020 04:55:28: 66000000 INFO @ Thu, 16 Apr 2020 04:55:29: 73000000 INFO @ Thu, 16 Apr 2020 04:55:31: 81000000 INFO @ Thu, 16 Apr 2020 04:55:32: 67000000 INFO @ Thu, 16 Apr 2020 04:55:33: 74000000 INFO @ Thu, 16 Apr 2020 04:55:35: 82000000 INFO @ Thu, 16 Apr 2020 04:55:36: 68000000 INFO @ Thu, 16 Apr 2020 04:55:38: 75000000 INFO @ Thu, 16 Apr 2020 04:55:40: 83000000 INFO @ Thu, 16 Apr 2020 04:55:41: 69000000 INFO @ Thu, 16 Apr 2020 04:55:42: 76000000 INFO @ Thu, 16 Apr 2020 04:55:44: 84000000 INFO @ Thu, 16 Apr 2020 04:55:45: 70000000 INFO @ Thu, 16 Apr 2020 04:55:46: 77000000 INFO @ Thu, 16 Apr 2020 04:55:48: 85000000 INFO @ Thu, 16 Apr 2020 04:55:49: 71000000 INFO @ Thu, 16 Apr 2020 04:55:51: 78000000 INFO @ Thu, 16 Apr 2020 04:55:52: 86000000 INFO @ Thu, 16 Apr 2020 04:55:54: 72000000 INFO @ Thu, 16 Apr 2020 04:55:55: 79000000 INFO @ Thu, 16 Apr 2020 04:55:57: 87000000 INFO @ Thu, 16 Apr 2020 04:55:58: 73000000 INFO @ Thu, 16 Apr 2020 04:55:59: 80000000 INFO @ Thu, 16 Apr 2020 04:56:00: #1 tag size is determined as 50 bps INFO @ Thu, 16 Apr 2020 04:56:00: #1 tag size = 50 INFO @ Thu, 16 Apr 2020 04:56:00: #1 total tags in treatment: 43081956 INFO @ Thu, 16 Apr 2020 04:56:00: #1 user defined the maximum tags... INFO @ Thu, 16 Apr 2020 04:56:00: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Thu, 16 Apr 2020 04:56:01: #1 tags after filtering in treatment: 32207774 INFO @ Thu, 16 Apr 2020 04:56:01: #1 Redundant rate of treatment: 0.25 INFO @ Thu, 16 Apr 2020 04:56:01: #1 finished! INFO @ Thu, 16 Apr 2020 04:56:01: #2 Build Peak Model... INFO @ Thu, 16 Apr 2020 04:56:01: #2 looking for paired plus/minus strand peaks... INFO @ Thu, 16 Apr 2020 04:56:02: 74000000 INFO @ Thu, 16 Apr 2020 04:56:03: #2 number of paired peaks: 2468 INFO @ Thu, 16 Apr 2020 04:56:03: start model_add_line... INFO @ Thu, 16 Apr 2020 04:56:03: start X-correlation... INFO @ Thu, 16 Apr 2020 04:56:03: end of X-cor INFO @ Thu, 16 Apr 2020 04:56:03: #2 finished! INFO @ Thu, 16 Apr 2020 04:56:03: #2 predicted fragment length is 138 bps INFO @ Thu, 16 Apr 2020 04:56:03: #2 alternative fragment length(s) may be 138 bps INFO @ Thu, 16 Apr 2020 04:56:03: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX6354117/SRX6354117.05_model.r INFO @ Thu, 16 Apr 2020 04:56:03: #3 Call peaks... INFO @ Thu, 16 Apr 2020 04:56:03: #3 Pre-compute pvalue-qvalue table... INFO @ Thu, 16 Apr 2020 04:56:04: 81000000 INFO @ Thu, 16 Apr 2020 04:56:07: 75000000 INFO @ Thu, 16 Apr 2020 04:56:08: 82000000 INFO @ Thu, 16 Apr 2020 04:56:11: 76000000 INFO @ Thu, 16 Apr 2020 04:56:12: 83000000 INFO @ Thu, 16 Apr 2020 04:56:16: 77000000 INFO @ Thu, 16 Apr 2020 04:56:17: 84000000 INFO @ Thu, 16 Apr 2020 04:56:20: 78000000 INFO @ Thu, 16 Apr 2020 04:56:21: 85000000 INFO @ Thu, 16 Apr 2020 04:56:24: 79000000 INFO @ Thu, 16 Apr 2020 04:56:25: 86000000 INFO @ Thu, 16 Apr 2020 04:56:29: 80000000 INFO @ Thu, 16 Apr 2020 04:56:30: 87000000 INFO @ Thu, 16 Apr 2020 04:56:33: 81000000 INFO @ Thu, 16 Apr 2020 04:56:33: #1 tag size is determined as 50 bps INFO @ Thu, 16 Apr 2020 04:56:33: #1 tag size = 50 INFO @ Thu, 16 Apr 2020 04:56:33: #1 total tags in treatment: 43081956 INFO @ Thu, 16 Apr 2020 04:56:33: #1 user defined the maximum tags... INFO @ Thu, 16 Apr 2020 04:56:33: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Thu, 16 Apr 2020 04:56:34: #1 tags after filtering in treatment: 32207774 INFO @ Thu, 16 Apr 2020 04:56:34: #1 Redundant rate of treatment: 0.25 INFO @ Thu, 16 Apr 2020 04:56:34: #1 finished! INFO @ Thu, 16 Apr 2020 04:56:34: #2 Build Peak Model... INFO @ Thu, 16 Apr 2020 04:56:34: #2 looking for paired plus/minus strand peaks... INFO @ Thu, 16 Apr 2020 04:56:36: #2 number of paired peaks: 2468 INFO @ Thu, 16 Apr 2020 04:56:36: start model_add_line... INFO @ Thu, 16 Apr 2020 04:56:36: start X-correlation... INFO @ Thu, 16 Apr 2020 04:56:36: end of X-cor INFO @ Thu, 16 Apr 2020 04:56:36: #2 finished! INFO @ Thu, 16 Apr 2020 04:56:36: #2 predicted fragment length is 138 bps INFO @ Thu, 16 Apr 2020 04:56:36: #2 alternative fragment length(s) may be 138 bps INFO @ Thu, 16 Apr 2020 04:56:36: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX6354117/SRX6354117.10_model.r INFO @ Thu, 16 Apr 2020 04:56:36: #3 Call peaks... INFO @ Thu, 16 Apr 2020 04:56:36: #3 Pre-compute pvalue-qvalue table... INFO @ Thu, 16 Apr 2020 04:56:37: 82000000 INFO @ Thu, 16 Apr 2020 04:56:41: 83000000 INFO @ Thu, 16 Apr 2020 04:56:46: 84000000 INFO @ Thu, 16 Apr 2020 04:56:50: 85000000 INFO @ Thu, 16 Apr 2020 04:56:54: 86000000 INFO @ Thu, 16 Apr 2020 04:56:59: 87000000 INFO @ Thu, 16 Apr 2020 04:57:02: #1 tag size is determined as 50 bps INFO @ Thu, 16 Apr 2020 04:57:02: #1 tag size = 50 INFO @ Thu, 16 Apr 2020 04:57:02: #1 total tags in treatment: 43081956 INFO @ Thu, 16 Apr 2020 04:57:02: #1 user defined the maximum tags... INFO @ Thu, 16 Apr 2020 04:57:02: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Thu, 16 Apr 2020 04:57:03: #1 tags after filtering in treatment: 32207774 INFO @ Thu, 16 Apr 2020 04:57:03: #1 Redundant rate of treatment: 0.25 INFO @ Thu, 16 Apr 2020 04:57:03: #1 finished! INFO @ Thu, 16 Apr 2020 04:57:03: #2 Build Peak Model... INFO @ Thu, 16 Apr 2020 04:57:03: #2 looking for paired plus/minus strand peaks... INFO @ Thu, 16 Apr 2020 04:57:05: #2 number of paired peaks: 2468 INFO @ Thu, 16 Apr 2020 04:57:05: start model_add_line... INFO @ Thu, 16 Apr 2020 04:57:05: start X-correlation... INFO @ Thu, 16 Apr 2020 04:57:05: end of X-cor INFO @ Thu, 16 Apr 2020 04:57:05: #2 finished! INFO @ Thu, 16 Apr 2020 04:57:05: #2 predicted fragment length is 138 bps INFO @ Thu, 16 Apr 2020 04:57:05: #2 alternative fragment length(s) may be 138 bps INFO @ Thu, 16 Apr 2020 04:57:05: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX6354117/SRX6354117.20_model.r INFO @ Thu, 16 Apr 2020 04:57:05: #3 Call peaks... INFO @ Thu, 16 Apr 2020 04:57:05: #3 Pre-compute pvalue-qvalue table... INFO @ Thu, 16 Apr 2020 04:57:07: #3 Call peaks for each chromosome... INFO @ Thu, 16 Apr 2020 04:57:34: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX6354117/SRX6354117.05_peaks.xls INFO @ Thu, 16 Apr 2020 04:57:34: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX6354117/SRX6354117.05_peaks.narrowPeak INFO @ Thu, 16 Apr 2020 04:57:34: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX6354117/SRX6354117.05_summits.bed INFO @ Thu, 16 Apr 2020 04:57:34: Done! pass1 - making usageList (14 chroms): 1 millis pass2 - checking and writing primary data (9527 records, 4 fields): 10 millis CompletedMACS2peakCalling INFO @ Thu, 16 Apr 2020 04:57:41: #3 Call peaks for each chromosome... INFO @ Thu, 16 Apr 2020 04:58:08: #3 Call peaks for each chromosome... INFO @ Thu, 16 Apr 2020 04:58:09: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX6354117/SRX6354117.10_peaks.xls INFO @ Thu, 16 Apr 2020 04:58:09: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX6354117/SRX6354117.10_peaks.narrowPeak INFO @ Thu, 16 Apr 2020 04:58:09: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX6354117/SRX6354117.10_summits.bed INFO @ Thu, 16 Apr 2020 04:58:09: Done! pass1 - making usageList (14 chroms): 2 millis pass2 - checking and writing primary data (8090 records, 4 fields): 8 millis CompletedMACS2peakCalling INFO @ Thu, 16 Apr 2020 04:58:35: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX6354117/SRX6354117.20_peaks.xls INFO @ Thu, 16 Apr 2020 04:58:35: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX6354117/SRX6354117.20_peaks.narrowPeak INFO @ Thu, 16 Apr 2020 04:58:35: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX6354117/SRX6354117.20_summits.bed INFO @ Thu, 16 Apr 2020 04:58:35: Done! pass1 - making usageList (14 chroms): 1 millis pass2 - checking and writing primary data (6532 records, 4 fields): 7 millis CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。