Job ID = 5720827 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2020-04-15T17:26:52 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T17:27:40 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) spots read : 89,065,327 reads read : 178,130,654 reads written : 178,130,654 rm: cannot remove ‘[DSE]RR*’: No such file or directory fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:31:34 89065327 reads; of these: 89065327 (100.00%) were paired; of these: 4025777 (4.52%) aligned concordantly 0 times 76858683 (86.29%) aligned concordantly exactly 1 time 8180867 (9.19%) aligned concordantly >1 times ---- 4025777 pairs aligned concordantly 0 times; of these: 239117 (5.94%) aligned discordantly 1 time ---- 3786660 pairs aligned 0 times concordantly or discordantly; of these: 7573320 mates make up the pairs; of these: 4874384 (64.36%) aligned 0 times 2180929 (28.80%) aligned exactly 1 time 518007 (6.84%) aligned >1 times 97.26% overall alignment rate Time searching: 01:31:34 Overall time: 01:31:34 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 72 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 38160439 / 85251794 = 0.4476 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Thu, 16 Apr 2020 04:43:30: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX5416202/SRX5416202.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX5416202/SRX5416202.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX5416202/SRX5416202.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX5416202/SRX5416202.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Thu, 16 Apr 2020 04:43:30: #1 read tag files... INFO @ Thu, 16 Apr 2020 04:43:30: #1 read treatment tags... INFO @ Thu, 16 Apr 2020 04:43:34: 1000000 INFO @ Thu, 16 Apr 2020 04:43:39: 2000000 INFO @ Thu, 16 Apr 2020 04:43:45: 3000000 INFO @ Thu, 16 Apr 2020 04:43:50: 4000000 INFO @ Thu, 16 Apr 2020 04:43:55: 5000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Thu, 16 Apr 2020 04:44:00: 6000000 INFO @ Thu, 16 Apr 2020 04:44:00: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX5416202/SRX5416202.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX5416202/SRX5416202.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX5416202/SRX5416202.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX5416202/SRX5416202.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Thu, 16 Apr 2020 04:44:00: #1 read tag files... INFO @ Thu, 16 Apr 2020 04:44:00: #1 read treatment tags... INFO @ Thu, 16 Apr 2020 04:44:04: 1000000 INFO @ Thu, 16 Apr 2020 04:44:05: 7000000 INFO @ Thu, 16 Apr 2020 04:44:08: 2000000 INFO @ Thu, 16 Apr 2020 04:44:09: 8000000 INFO @ Thu, 16 Apr 2020 04:44:13: 3000000 INFO @ Thu, 16 Apr 2020 04:44:14: 9000000 INFO @ Thu, 16 Apr 2020 04:44:17: 4000000 INFO @ Thu, 16 Apr 2020 04:44:19: 10000000 INFO @ Thu, 16 Apr 2020 04:44:21: 5000000 INFO @ Thu, 16 Apr 2020 04:44:24: 11000000 INFO @ Thu, 16 Apr 2020 04:44:26: 6000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Thu, 16 Apr 2020 04:44:29: 12000000 INFO @ Thu, 16 Apr 2020 04:44:30: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX5416202/SRX5416202.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX5416202/SRX5416202.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX5416202/SRX5416202.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX5416202/SRX5416202.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Thu, 16 Apr 2020 04:44:30: #1 read tag files... INFO @ Thu, 16 Apr 2020 04:44:30: #1 read treatment tags... INFO @ Thu, 16 Apr 2020 04:44:30: 7000000 INFO @ Thu, 16 Apr 2020 04:44:34: 1000000 INFO @ Thu, 16 Apr 2020 04:44:34: 8000000 INFO @ Thu, 16 Apr 2020 04:44:34: 13000000 INFO @ Thu, 16 Apr 2020 04:44:38: 9000000 INFO @ Thu, 16 Apr 2020 04:44:38: 2000000 INFO @ Thu, 16 Apr 2020 04:44:39: 14000000 INFO @ Thu, 16 Apr 2020 04:44:43: 10000000 INFO @ Thu, 16 Apr 2020 04:44:43: 3000000 INFO @ Thu, 16 Apr 2020 04:44:44: 15000000 INFO @ Thu, 16 Apr 2020 04:44:47: 11000000 INFO @ Thu, 16 Apr 2020 04:44:47: 4000000 INFO @ Thu, 16 Apr 2020 04:44:49: 16000000 INFO @ Thu, 16 Apr 2020 04:44:51: 12000000 INFO @ Thu, 16 Apr 2020 04:44:51: 5000000 INFO @ Thu, 16 Apr 2020 04:44:54: 17000000 INFO @ Thu, 16 Apr 2020 04:44:55: 13000000 INFO @ Thu, 16 Apr 2020 04:44:55: 6000000 INFO @ Thu, 16 Apr 2020 04:44:59: 18000000 INFO @ Thu, 16 Apr 2020 04:45:00: 7000000 INFO @ Thu, 16 Apr 2020 04:45:00: 14000000 INFO @ Thu, 16 Apr 2020 04:45:04: 8000000 INFO @ Thu, 16 Apr 2020 04:45:04: 15000000 INFO @ Thu, 16 Apr 2020 04:45:04: 19000000 INFO @ Thu, 16 Apr 2020 04:45:08: 9000000 INFO @ Thu, 16 Apr 2020 04:45:09: 16000000 INFO @ Thu, 16 Apr 2020 04:45:09: 20000000 INFO @ Thu, 16 Apr 2020 04:45:12: 10000000 INFO @ Thu, 16 Apr 2020 04:45:13: 17000000 INFO @ Thu, 16 Apr 2020 04:45:14: 21000000 INFO @ Thu, 16 Apr 2020 04:45:17: 11000000 INFO @ Thu, 16 Apr 2020 04:45:17: 18000000 INFO @ Thu, 16 Apr 2020 04:45:19: 22000000 INFO @ Thu, 16 Apr 2020 04:45:21: 12000000 INFO @ Thu, 16 Apr 2020 04:45:21: 19000000 INFO @ Thu, 16 Apr 2020 04:45:24: 23000000 INFO @ Thu, 16 Apr 2020 04:45:25: 13000000 INFO @ Thu, 16 Apr 2020 04:45:26: 20000000 INFO @ Thu, 16 Apr 2020 04:45:29: 24000000 INFO @ Thu, 16 Apr 2020 04:45:30: 14000000 INFO @ Thu, 16 Apr 2020 04:45:30: 21000000 INFO @ Thu, 16 Apr 2020 04:45:34: 25000000 INFO @ Thu, 16 Apr 2020 04:45:34: 15000000 INFO @ Thu, 16 Apr 2020 04:45:34: 22000000 INFO @ Thu, 16 Apr 2020 04:45:38: 16000000 INFO @ Thu, 16 Apr 2020 04:45:38: 23000000 INFO @ Thu, 16 Apr 2020 04:45:39: 26000000 INFO @ Thu, 16 Apr 2020 04:45:42: 17000000 INFO @ Thu, 16 Apr 2020 04:45:43: 24000000 INFO @ Thu, 16 Apr 2020 04:45:44: 27000000 INFO @ Thu, 16 Apr 2020 04:45:47: 18000000 INFO @ Thu, 16 Apr 2020 04:45:47: 25000000 INFO @ Thu, 16 Apr 2020 04:45:49: 28000000 INFO @ Thu, 16 Apr 2020 04:45:51: 19000000 INFO @ Thu, 16 Apr 2020 04:45:51: 26000000 INFO @ Thu, 16 Apr 2020 04:45:54: 29000000 INFO @ Thu, 16 Apr 2020 04:45:55: 20000000 INFO @ Thu, 16 Apr 2020 04:45:55: 27000000 INFO @ Thu, 16 Apr 2020 04:45:58: 30000000 INFO @ Thu, 16 Apr 2020 04:45:59: 21000000 INFO @ Thu, 16 Apr 2020 04:46:00: 28000000 INFO @ Thu, 16 Apr 2020 04:46:03: 31000000 INFO @ Thu, 16 Apr 2020 04:46:04: 22000000 INFO @ Thu, 16 Apr 2020 04:46:04: 29000000 INFO @ Thu, 16 Apr 2020 04:46:08: 23000000 INFO @ Thu, 16 Apr 2020 04:46:08: 32000000 INFO @ Thu, 16 Apr 2020 04:46:08: 30000000 INFO @ Thu, 16 Apr 2020 04:46:12: 24000000 INFO @ Thu, 16 Apr 2020 04:46:13: 31000000 INFO @ Thu, 16 Apr 2020 04:46:13: 33000000 INFO @ Thu, 16 Apr 2020 04:46:16: 25000000 INFO @ Thu, 16 Apr 2020 04:46:17: 32000000 INFO @ Thu, 16 Apr 2020 04:46:18: 34000000 INFO @ Thu, 16 Apr 2020 04:46:21: 26000000 INFO @ Thu, 16 Apr 2020 04:46:21: 33000000 INFO @ Thu, 16 Apr 2020 04:46:23: 35000000 INFO @ Thu, 16 Apr 2020 04:46:25: 27000000 INFO @ Thu, 16 Apr 2020 04:46:25: 34000000 INFO @ Thu, 16 Apr 2020 04:46:28: 36000000 INFO @ Thu, 16 Apr 2020 04:46:29: 28000000 INFO @ Thu, 16 Apr 2020 04:46:30: 35000000 INFO @ Thu, 16 Apr 2020 04:46:33: 37000000 INFO @ Thu, 16 Apr 2020 04:46:34: 29000000 INFO @ Thu, 16 Apr 2020 04:46:34: 36000000 INFO @ Thu, 16 Apr 2020 04:46:37: 38000000 INFO @ Thu, 16 Apr 2020 04:46:38: 30000000 INFO @ Thu, 16 Apr 2020 04:46:38: 37000000 INFO @ Thu, 16 Apr 2020 04:46:42: 31000000 INFO @ Thu, 16 Apr 2020 04:46:42: 39000000 INFO @ Thu, 16 Apr 2020 04:46:43: 38000000 INFO @ Thu, 16 Apr 2020 04:46:46: 32000000 INFO @ Thu, 16 Apr 2020 04:46:47: 39000000 INFO @ Thu, 16 Apr 2020 04:46:47: 40000000 INFO @ Thu, 16 Apr 2020 04:46:51: 33000000 INFO @ Thu, 16 Apr 2020 04:46:51: 40000000 INFO @ Thu, 16 Apr 2020 04:46:52: 41000000 INFO @ Thu, 16 Apr 2020 04:46:55: 34000000 INFO @ Thu, 16 Apr 2020 04:46:56: 41000000 INFO @ Thu, 16 Apr 2020 04:46:57: 42000000 INFO @ Thu, 16 Apr 2020 04:46:59: 35000000 INFO @ Thu, 16 Apr 2020 04:47:00: 42000000 INFO @ Thu, 16 Apr 2020 04:47:02: 43000000 INFO @ Thu, 16 Apr 2020 04:47:03: 36000000 INFO @ Thu, 16 Apr 2020 04:47:04: 43000000 INFO @ Thu, 16 Apr 2020 04:47:07: 44000000 INFO @ Thu, 16 Apr 2020 04:47:08: 37000000 INFO @ Thu, 16 Apr 2020 04:47:09: 44000000 INFO @ Thu, 16 Apr 2020 04:47:12: 45000000 INFO @ Thu, 16 Apr 2020 04:47:12: 38000000 INFO @ Thu, 16 Apr 2020 04:47:13: 45000000 INFO @ Thu, 16 Apr 2020 04:47:16: 39000000 INFO @ Thu, 16 Apr 2020 04:47:17: 46000000 INFO @ Thu, 16 Apr 2020 04:47:18: 46000000 INFO @ Thu, 16 Apr 2020 04:47:20: 40000000 INFO @ Thu, 16 Apr 2020 04:47:22: 47000000 INFO @ Thu, 16 Apr 2020 04:47:23: 47000000 INFO @ Thu, 16 Apr 2020 04:47:25: 41000000 INFO @ Thu, 16 Apr 2020 04:47:27: 48000000 INFO @ Thu, 16 Apr 2020 04:47:28: 48000000 INFO @ Thu, 16 Apr 2020 04:47:29: 42000000 INFO @ Thu, 16 Apr 2020 04:47:32: 49000000 INFO @ Thu, 16 Apr 2020 04:47:33: 49000000 INFO @ Thu, 16 Apr 2020 04:47:34: 43000000 INFO @ Thu, 16 Apr 2020 04:47:36: 50000000 INFO @ Thu, 16 Apr 2020 04:47:38: 50000000 INFO @ Thu, 16 Apr 2020 04:47:38: 44000000 INFO @ Thu, 16 Apr 2020 04:47:41: 51000000 INFO @ Thu, 16 Apr 2020 04:47:42: 45000000 INFO @ Thu, 16 Apr 2020 04:47:42: 51000000 INFO @ Thu, 16 Apr 2020 04:47:46: 52000000 INFO @ Thu, 16 Apr 2020 04:47:47: 46000000 INFO @ Thu, 16 Apr 2020 04:47:47: 52000000 INFO @ Thu, 16 Apr 2020 04:47:51: 47000000 INFO @ Thu, 16 Apr 2020 04:47:52: 53000000 INFO @ Thu, 16 Apr 2020 04:47:52: 53000000 INFO @ Thu, 16 Apr 2020 04:47:55: 48000000 INFO @ Thu, 16 Apr 2020 04:47:57: 54000000 INFO @ Thu, 16 Apr 2020 04:47:57: 54000000 INFO @ Thu, 16 Apr 2020 04:48:00: 49000000 INFO @ Thu, 16 Apr 2020 04:48:02: 55000000 INFO @ Thu, 16 Apr 2020 04:48:02: 55000000 INFO @ Thu, 16 Apr 2020 04:48:04: 50000000 INFO @ Thu, 16 Apr 2020 04:48:07: 56000000 INFO @ Thu, 16 Apr 2020 04:48:07: 56000000 INFO @ Thu, 16 Apr 2020 04:48:09: 51000000 INFO @ Thu, 16 Apr 2020 04:48:11: 57000000 INFO @ Thu, 16 Apr 2020 04:48:12: 57000000 INFO @ Thu, 16 Apr 2020 04:48:13: 52000000 INFO @ Thu, 16 Apr 2020 04:48:16: 58000000 INFO @ Thu, 16 Apr 2020 04:48:17: 53000000 INFO @ Thu, 16 Apr 2020 04:48:17: 58000000 INFO @ Thu, 16 Apr 2020 04:48:21: 59000000 INFO @ Thu, 16 Apr 2020 04:48:22: 54000000 INFO @ Thu, 16 Apr 2020 04:48:22: 59000000 INFO @ Thu, 16 Apr 2020 04:48:26: 55000000 INFO @ Thu, 16 Apr 2020 04:48:26: 60000000 INFO @ Thu, 16 Apr 2020 04:48:27: 60000000 INFO @ Thu, 16 Apr 2020 04:48:30: 56000000 INFO @ Thu, 16 Apr 2020 04:48:31: 61000000 INFO @ Thu, 16 Apr 2020 04:48:32: 61000000 INFO @ Thu, 16 Apr 2020 04:48:35: 57000000 INFO @ Thu, 16 Apr 2020 04:48:36: 62000000 INFO @ Thu, 16 Apr 2020 04:48:37: 62000000 INFO @ Thu, 16 Apr 2020 04:48:39: 58000000 INFO @ Thu, 16 Apr 2020 04:48:41: 63000000 INFO @ Thu, 16 Apr 2020 04:48:42: 63000000 INFO @ Thu, 16 Apr 2020 04:48:43: 59000000 INFO @ Thu, 16 Apr 2020 04:48:46: 64000000 INFO @ Thu, 16 Apr 2020 04:48:47: 64000000 INFO @ Thu, 16 Apr 2020 04:48:48: 60000000 INFO @ Thu, 16 Apr 2020 04:48:51: 65000000 INFO @ Thu, 16 Apr 2020 04:48:52: 61000000 INFO @ Thu, 16 Apr 2020 04:48:52: 65000000 INFO @ Thu, 16 Apr 2020 04:48:56: 66000000 INFO @ Thu, 16 Apr 2020 04:48:56: 62000000 INFO @ Thu, 16 Apr 2020 04:48:57: 66000000 INFO @ Thu, 16 Apr 2020 04:49:01: 63000000 INFO @ Thu, 16 Apr 2020 04:49:01: 67000000 INFO @ Thu, 16 Apr 2020 04:49:02: 67000000 INFO @ Thu, 16 Apr 2020 04:49:05: 64000000 INFO @ Thu, 16 Apr 2020 04:49:06: 68000000 INFO @ Thu, 16 Apr 2020 04:49:07: 68000000 INFO @ Thu, 16 Apr 2020 04:49:09: 65000000 INFO @ Thu, 16 Apr 2020 04:49:11: 69000000 INFO @ Thu, 16 Apr 2020 04:49:12: 69000000 INFO @ Thu, 16 Apr 2020 04:49:14: 66000000 INFO @ Thu, 16 Apr 2020 04:49:16: 70000000 INFO @ Thu, 16 Apr 2020 04:49:17: 70000000 INFO @ Thu, 16 Apr 2020 04:49:18: 67000000 INFO @ Thu, 16 Apr 2020 04:49:21: 71000000 INFO @ Thu, 16 Apr 2020 04:49:22: 71000000 INFO @ Thu, 16 Apr 2020 04:49:22: 68000000 INFO @ Thu, 16 Apr 2020 04:49:26: 72000000 INFO @ Thu, 16 Apr 2020 04:49:27: 72000000 INFO @ Thu, 16 Apr 2020 04:49:27: 69000000 INFO @ Thu, 16 Apr 2020 04:49:31: 73000000 INFO @ Thu, 16 Apr 2020 04:49:31: 70000000 INFO @ Thu, 16 Apr 2020 04:49:32: 73000000 INFO @ Thu, 16 Apr 2020 04:49:35: 71000000 INFO @ Thu, 16 Apr 2020 04:49:36: 74000000 INFO @ Thu, 16 Apr 2020 04:49:37: 74000000 INFO @ Thu, 16 Apr 2020 04:49:40: 72000000 INFO @ Thu, 16 Apr 2020 04:49:41: 75000000 INFO @ Thu, 16 Apr 2020 04:49:42: 75000000 INFO @ Thu, 16 Apr 2020 04:49:44: 73000000 INFO @ Thu, 16 Apr 2020 04:49:46: 76000000 INFO @ Thu, 16 Apr 2020 04:49:47: 76000000 INFO @ Thu, 16 Apr 2020 04:49:48: 74000000 INFO @ Thu, 16 Apr 2020 04:49:51: 77000000 INFO @ Thu, 16 Apr 2020 04:49:51: 77000000 INFO @ Thu, 16 Apr 2020 04:49:53: 75000000 INFO @ Thu, 16 Apr 2020 04:49:56: 78000000 INFO @ Thu, 16 Apr 2020 04:49:56: 78000000 INFO @ Thu, 16 Apr 2020 04:49:57: 76000000 INFO @ Thu, 16 Apr 2020 04:50:01: 79000000 INFO @ Thu, 16 Apr 2020 04:50:01: 79000000 INFO @ Thu, 16 Apr 2020 04:50:02: 77000000 INFO @ Thu, 16 Apr 2020 04:50:06: 80000000 INFO @ Thu, 16 Apr 2020 04:50:06: 78000000 INFO @ Thu, 16 Apr 2020 04:50:07: 80000000 INFO @ Thu, 16 Apr 2020 04:50:11: 79000000 INFO @ Thu, 16 Apr 2020 04:50:11: 81000000 INFO @ Thu, 16 Apr 2020 04:50:12: 81000000 INFO @ Thu, 16 Apr 2020 04:50:15: 80000000 INFO @ Thu, 16 Apr 2020 04:50:16: 82000000 INFO @ Thu, 16 Apr 2020 04:50:17: 82000000 INFO @ Thu, 16 Apr 2020 04:50:19: 81000000 INFO @ Thu, 16 Apr 2020 04:50:20: 83000000 INFO @ Thu, 16 Apr 2020 04:50:22: 83000000 INFO @ Thu, 16 Apr 2020 04:50:24: 82000000 INFO @ Thu, 16 Apr 2020 04:50:25: 84000000 INFO @ Thu, 16 Apr 2020 04:50:26: 84000000 INFO @ Thu, 16 Apr 2020 04:50:28: 83000000 INFO @ Thu, 16 Apr 2020 04:50:30: 85000000 INFO @ Thu, 16 Apr 2020 04:50:31: 85000000 INFO @ Thu, 16 Apr 2020 04:50:33: 84000000 INFO @ Thu, 16 Apr 2020 04:50:35: 86000000 INFO @ Thu, 16 Apr 2020 04:50:36: 86000000 INFO @ Thu, 16 Apr 2020 04:50:37: 85000000 INFO @ Thu, 16 Apr 2020 04:50:40: 87000000 INFO @ Thu, 16 Apr 2020 04:50:41: 87000000 INFO @ Thu, 16 Apr 2020 04:50:41: 86000000 INFO @ Thu, 16 Apr 2020 04:50:45: 88000000 INFO @ Thu, 16 Apr 2020 04:50:46: 87000000 INFO @ Thu, 16 Apr 2020 04:50:46: 88000000 INFO @ Thu, 16 Apr 2020 04:50:50: 88000000 INFO @ Thu, 16 Apr 2020 04:50:50: 89000000 INFO @ Thu, 16 Apr 2020 04:50:51: 89000000 INFO @ Thu, 16 Apr 2020 04:50:54: 89000000 INFO @ Thu, 16 Apr 2020 04:50:55: 90000000 INFO @ Thu, 16 Apr 2020 04:50:56: 90000000 INFO @ Thu, 16 Apr 2020 04:50:59: 90000000 INFO @ Thu, 16 Apr 2020 04:51:00: 91000000 INFO @ Thu, 16 Apr 2020 04:51:01: 91000000 INFO @ Thu, 16 Apr 2020 04:51:03: 91000000 INFO @ Thu, 16 Apr 2020 04:51:05: 92000000 INFO @ Thu, 16 Apr 2020 04:51:06: 92000000 INFO @ Thu, 16 Apr 2020 04:51:08: 92000000 INFO @ Thu, 16 Apr 2020 04:51:10: 93000000 INFO @ Thu, 16 Apr 2020 04:51:11: 93000000 INFO @ Thu, 16 Apr 2020 04:51:12: 93000000 INFO @ Thu, 16 Apr 2020 04:51:15: 94000000 INFO @ Thu, 16 Apr 2020 04:51:16: 94000000 INFO @ Thu, 16 Apr 2020 04:51:17: 94000000 INFO @ Thu, 16 Apr 2020 04:51:20: 95000000 INFO @ Thu, 16 Apr 2020 04:51:21: 95000000 INFO @ Thu, 16 Apr 2020 04:51:22: 95000000 INFO @ Thu, 16 Apr 2020 04:51:25: 96000000 INFO @ Thu, 16 Apr 2020 04:51:26: 96000000 INFO @ Thu, 16 Apr 2020 04:51:27: 96000000 INFO @ Thu, 16 Apr 2020 04:51:30: #1 tag size is determined as 49 bps INFO @ Thu, 16 Apr 2020 04:51:30: #1 tag size = 49 INFO @ Thu, 16 Apr 2020 04:51:30: #1 total tags in treatment: 46975740 INFO @ Thu, 16 Apr 2020 04:51:30: #1 user defined the maximum tags... INFO @ Thu, 16 Apr 2020 04:51:30: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Thu, 16 Apr 2020 04:51:31: #1 tag size is determined as 49 bps INFO @ Thu, 16 Apr 2020 04:51:31: #1 tag size = 49 INFO @ Thu, 16 Apr 2020 04:51:31: #1 total tags in treatment: 46975740 INFO @ Thu, 16 Apr 2020 04:51:31: #1 user defined the maximum tags... INFO @ Thu, 16 Apr 2020 04:51:31: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Thu, 16 Apr 2020 04:51:31: #1 tags after filtering in treatment: 31060837 INFO @ Thu, 16 Apr 2020 04:51:31: #1 Redundant rate of treatment: 0.34 INFO @ Thu, 16 Apr 2020 04:51:31: #1 finished! INFO @ Thu, 16 Apr 2020 04:51:31: #2 Build Peak Model... INFO @ Thu, 16 Apr 2020 04:51:31: #2 looking for paired plus/minus strand peaks... INFO @ Thu, 16 Apr 2020 04:51:32: #1 tag size is determined as 49 bps INFO @ Thu, 16 Apr 2020 04:51:32: #1 tag size = 49 INFO @ Thu, 16 Apr 2020 04:51:32: #1 total tags in treatment: 46975740 INFO @ Thu, 16 Apr 2020 04:51:32: #1 user defined the maximum tags... INFO @ Thu, 16 Apr 2020 04:51:32: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Thu, 16 Apr 2020 04:51:32: #1 tags after filtering in treatment: 31060837 INFO @ Thu, 16 Apr 2020 04:51:32: #1 Redundant rate of treatment: 0.34 INFO @ Thu, 16 Apr 2020 04:51:32: #1 finished! INFO @ Thu, 16 Apr 2020 04:51:32: #2 Build Peak Model... INFO @ Thu, 16 Apr 2020 04:51:32: #2 looking for paired plus/minus strand peaks... INFO @ Thu, 16 Apr 2020 04:51:32: #1 tags after filtering in treatment: 31060837 INFO @ Thu, 16 Apr 2020 04:51:32: #1 Redundant rate of treatment: 0.34 INFO @ Thu, 16 Apr 2020 04:51:32: #1 finished! INFO @ Thu, 16 Apr 2020 04:51:32: #2 Build Peak Model... INFO @ Thu, 16 Apr 2020 04:51:32: #2 looking for paired plus/minus strand peaks... INFO @ Thu, 16 Apr 2020 04:51:33: #2 number of paired peaks: 5348 INFO @ Thu, 16 Apr 2020 04:51:33: start model_add_line... INFO @ Thu, 16 Apr 2020 04:51:34: start X-correlation... INFO @ Thu, 16 Apr 2020 04:51:34: end of X-cor INFO @ Thu, 16 Apr 2020 04:51:34: #2 finished! INFO @ Thu, 16 Apr 2020 04:51:34: #2 predicted fragment length is 157 bps INFO @ Thu, 16 Apr 2020 04:51:34: #2 alternative fragment length(s) may be 157 bps INFO @ Thu, 16 Apr 2020 04:51:34: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX5416202/SRX5416202.05_model.r INFO @ Thu, 16 Apr 2020 04:51:34: #3 Call peaks... INFO @ Thu, 16 Apr 2020 04:51:34: #3 Pre-compute pvalue-qvalue table... INFO @ Thu, 16 Apr 2020 04:51:34: #2 number of paired peaks: 5348 INFO @ Thu, 16 Apr 2020 04:51:34: start model_add_line... INFO @ Thu, 16 Apr 2020 04:51:35: start X-correlation... INFO @ Thu, 16 Apr 2020 04:51:35: end of X-cor INFO @ Thu, 16 Apr 2020 04:51:35: #2 finished! INFO @ Thu, 16 Apr 2020 04:51:35: #2 predicted fragment length is 157 bps INFO @ Thu, 16 Apr 2020 04:51:35: #2 alternative fragment length(s) may be 157 bps INFO @ Thu, 16 Apr 2020 04:51:35: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX5416202/SRX5416202.10_model.r INFO @ Thu, 16 Apr 2020 04:51:35: #3 Call peaks... INFO @ Thu, 16 Apr 2020 04:51:35: #3 Pre-compute pvalue-qvalue table... INFO @ Thu, 16 Apr 2020 04:51:35: #2 number of paired peaks: 5348 INFO @ Thu, 16 Apr 2020 04:51:35: start model_add_line... INFO @ Thu, 16 Apr 2020 04:51:35: start X-correlation... INFO @ Thu, 16 Apr 2020 04:51:35: end of X-cor INFO @ Thu, 16 Apr 2020 04:51:35: #2 finished! INFO @ Thu, 16 Apr 2020 04:51:35: #2 predicted fragment length is 157 bps INFO @ Thu, 16 Apr 2020 04:51:35: #2 alternative fragment length(s) may be 157 bps INFO @ Thu, 16 Apr 2020 04:51:35: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX5416202/SRX5416202.20_model.r INFO @ Thu, 16 Apr 2020 04:51:35: #3 Call peaks... INFO @ Thu, 16 Apr 2020 04:51:35: #3 Pre-compute pvalue-qvalue table... INFO @ Thu, 16 Apr 2020 04:52:38: #3 Call peaks for each chromosome... INFO @ Thu, 16 Apr 2020 04:52:39: #3 Call peaks for each chromosome... INFO @ Thu, 16 Apr 2020 04:52:42: #3 Call peaks for each chromosome... INFO @ Thu, 16 Apr 2020 04:53:08: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX5416202/SRX5416202.10_peaks.xls INFO @ Thu, 16 Apr 2020 04:53:08: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX5416202/SRX5416202.10_peaks.narrowPeak INFO @ Thu, 16 Apr 2020 04:53:08: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX5416202/SRX5416202.05_peaks.xls INFO @ Thu, 16 Apr 2020 04:53:08: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX5416202/SRX5416202.10_summits.bed INFO @ Thu, 16 Apr 2020 04:53:08: Done! INFO @ Thu, 16 Apr 2020 04:53:08: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX5416202/SRX5416202.05_peaks.narrowPeak INFO @ Thu, 16 Apr 2020 04:53:08: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX5416202/SRX5416202.05_summits.bed INFO @ Thu, 16 Apr 2020 04:53:08: Done! pass1 - making usageList (15 chroms): 2 millis pass2 - checking and writing primary data (9386 records, 4 fields): 10 millis CompletedMACS2peakCalling pass1 - making usageList (15 chroms): 2 millis pass2 - checking and writing primary data (10952 records, 4 fields): 11 millis CompletedMACS2peakCalling INFO @ Thu, 16 Apr 2020 04:53:10: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX5416202/SRX5416202.20_peaks.xls INFO @ Thu, 16 Apr 2020 04:53:10: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX5416202/SRX5416202.20_peaks.narrowPeak INFO @ Thu, 16 Apr 2020 04:53:11: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX5416202/SRX5416202.20_summits.bed INFO @ Thu, 16 Apr 2020 04:53:11: Done! pass1 - making usageList (14 chroms): 1 millis pass2 - checking and writing primary data (7443 records, 4 fields): 8 millis CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。