Job ID = 5720826 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2020-04-15T17:16:32 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) spots read : 82,245,619 reads read : 164,491,238 reads written : 164,491,238 rm: cannot remove ‘[DSE]RR*’: No such file or directory fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:20:56 82245619 reads; of these: 82245619 (100.00%) were paired; of these: 3492219 (4.25%) aligned concordantly 0 times 71505244 (86.94%) aligned concordantly exactly 1 time 7248156 (8.81%) aligned concordantly >1 times ---- 3492219 pairs aligned concordantly 0 times; of these: 163928 (4.69%) aligned discordantly 1 time ---- 3328291 pairs aligned 0 times concordantly or discordantly; of these: 6656582 mates make up the pairs; of these: 4757944 (71.48%) aligned 0 times 1543911 (23.19%) aligned exactly 1 time 354727 (5.33%) aligned >1 times 97.11% overall alignment rate Time searching: 01:20:56 Overall time: 01:20:56 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 68 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 27565112 / 78895169 = 0.3494 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Thu, 16 Apr 2020 04:26:00: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX5416201/SRX5416201.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX5416201/SRX5416201.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX5416201/SRX5416201.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX5416201/SRX5416201.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Thu, 16 Apr 2020 04:26:00: #1 read tag files... INFO @ Thu, 16 Apr 2020 04:26:00: #1 read treatment tags... INFO @ Thu, 16 Apr 2020 04:26:07: 1000000 INFO @ Thu, 16 Apr 2020 04:26:13: 2000000 INFO @ Thu, 16 Apr 2020 04:26:20: 3000000 INFO @ Thu, 16 Apr 2020 04:26:27: 4000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Thu, 16 Apr 2020 04:26:31: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX5416201/SRX5416201.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX5416201/SRX5416201.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX5416201/SRX5416201.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX5416201/SRX5416201.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Thu, 16 Apr 2020 04:26:31: #1 read tag files... INFO @ Thu, 16 Apr 2020 04:26:31: #1 read treatment tags... INFO @ Thu, 16 Apr 2020 04:26:33: 5000000 INFO @ Thu, 16 Apr 2020 04:26:38: 1000000 INFO @ Thu, 16 Apr 2020 04:26:41: 6000000 INFO @ Thu, 16 Apr 2020 04:26:45: 2000000 INFO @ Thu, 16 Apr 2020 04:26:48: 7000000 INFO @ Thu, 16 Apr 2020 04:26:51: 3000000 INFO @ Thu, 16 Apr 2020 04:26:56: 8000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Thu, 16 Apr 2020 04:26:58: 4000000 INFO @ Thu, 16 Apr 2020 04:27:00: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX5416201/SRX5416201.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX5416201/SRX5416201.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX5416201/SRX5416201.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX5416201/SRX5416201.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Thu, 16 Apr 2020 04:27:00: #1 read tag files... INFO @ Thu, 16 Apr 2020 04:27:00: #1 read treatment tags... INFO @ Thu, 16 Apr 2020 04:27:03: 9000000 INFO @ Thu, 16 Apr 2020 04:27:05: 5000000 INFO @ Thu, 16 Apr 2020 04:27:08: 1000000 INFO @ Thu, 16 Apr 2020 04:27:11: 10000000 INFO @ Thu, 16 Apr 2020 04:27:12: 6000000 INFO @ Thu, 16 Apr 2020 04:27:15: 2000000 INFO @ Thu, 16 Apr 2020 04:27:18: 11000000 INFO @ Thu, 16 Apr 2020 04:27:18: 7000000 INFO @ Thu, 16 Apr 2020 04:27:23: 3000000 INFO @ Thu, 16 Apr 2020 04:27:25: 8000000 INFO @ Thu, 16 Apr 2020 04:27:26: 12000000 INFO @ Thu, 16 Apr 2020 04:27:31: 4000000 INFO @ Thu, 16 Apr 2020 04:27:32: 9000000 INFO @ Thu, 16 Apr 2020 04:27:33: 13000000 INFO @ Thu, 16 Apr 2020 04:27:38: 5000000 INFO @ Thu, 16 Apr 2020 04:27:39: 10000000 INFO @ Thu, 16 Apr 2020 04:27:41: 14000000 INFO @ Thu, 16 Apr 2020 04:27:45: 11000000 INFO @ Thu, 16 Apr 2020 04:27:46: 6000000 INFO @ Thu, 16 Apr 2020 04:27:48: 15000000 INFO @ Thu, 16 Apr 2020 04:27:52: 12000000 INFO @ Thu, 16 Apr 2020 04:27:54: 7000000 INFO @ Thu, 16 Apr 2020 04:27:56: 16000000 INFO @ Thu, 16 Apr 2020 04:27:59: 13000000 INFO @ Thu, 16 Apr 2020 04:28:01: 8000000 INFO @ Thu, 16 Apr 2020 04:28:04: 17000000 INFO @ Thu, 16 Apr 2020 04:28:06: 14000000 INFO @ Thu, 16 Apr 2020 04:28:09: 9000000 INFO @ Thu, 16 Apr 2020 04:28:11: 18000000 INFO @ Thu, 16 Apr 2020 04:28:12: 15000000 INFO @ Thu, 16 Apr 2020 04:28:16: 10000000 INFO @ Thu, 16 Apr 2020 04:28:19: 19000000 INFO @ Thu, 16 Apr 2020 04:28:19: 16000000 INFO @ Thu, 16 Apr 2020 04:28:24: 11000000 INFO @ Thu, 16 Apr 2020 04:28:26: 17000000 INFO @ Thu, 16 Apr 2020 04:28:26: 20000000 INFO @ Thu, 16 Apr 2020 04:28:31: 12000000 INFO @ Thu, 16 Apr 2020 04:28:33: 18000000 INFO @ Thu, 16 Apr 2020 04:28:34: 21000000 INFO @ Thu, 16 Apr 2020 04:28:39: 13000000 INFO @ Thu, 16 Apr 2020 04:28:39: 19000000 INFO @ Thu, 16 Apr 2020 04:28:41: 22000000 INFO @ Thu, 16 Apr 2020 04:28:46: 20000000 INFO @ Thu, 16 Apr 2020 04:28:47: 14000000 INFO @ Thu, 16 Apr 2020 04:28:49: 23000000 INFO @ Thu, 16 Apr 2020 04:28:53: 21000000 INFO @ Thu, 16 Apr 2020 04:28:54: 15000000 INFO @ Thu, 16 Apr 2020 04:28:56: 24000000 INFO @ Thu, 16 Apr 2020 04:28:59: 22000000 INFO @ Thu, 16 Apr 2020 04:29:02: 16000000 INFO @ Thu, 16 Apr 2020 04:29:04: 25000000 INFO @ Thu, 16 Apr 2020 04:29:06: 23000000 INFO @ Thu, 16 Apr 2020 04:29:09: 17000000 INFO @ Thu, 16 Apr 2020 04:29:11: 26000000 INFO @ Thu, 16 Apr 2020 04:29:13: 24000000 INFO @ Thu, 16 Apr 2020 04:29:17: 18000000 INFO @ Thu, 16 Apr 2020 04:29:19: 27000000 INFO @ Thu, 16 Apr 2020 04:29:20: 25000000 INFO @ Thu, 16 Apr 2020 04:29:25: 19000000 INFO @ Thu, 16 Apr 2020 04:29:26: 26000000 INFO @ Thu, 16 Apr 2020 04:29:26: 28000000 INFO @ Thu, 16 Apr 2020 04:29:32: 20000000 INFO @ Thu, 16 Apr 2020 04:29:33: 27000000 INFO @ Thu, 16 Apr 2020 04:29:34: 29000000 INFO @ Thu, 16 Apr 2020 04:29:40: 28000000 INFO @ Thu, 16 Apr 2020 04:29:40: 21000000 INFO @ Thu, 16 Apr 2020 04:29:41: 30000000 INFO @ Thu, 16 Apr 2020 04:29:47: 29000000 INFO @ Thu, 16 Apr 2020 04:29:48: 22000000 INFO @ Thu, 16 Apr 2020 04:29:49: 31000000 INFO @ Thu, 16 Apr 2020 04:29:53: 30000000 INFO @ Thu, 16 Apr 2020 04:29:56: 23000000 INFO @ Thu, 16 Apr 2020 04:29:56: 32000000 INFO @ Thu, 16 Apr 2020 04:30:00: 31000000 INFO @ Thu, 16 Apr 2020 04:30:03: 24000000 INFO @ Thu, 16 Apr 2020 04:30:03: 33000000 INFO @ Thu, 16 Apr 2020 04:30:07: 32000000 INFO @ Thu, 16 Apr 2020 04:30:11: 34000000 INFO @ Thu, 16 Apr 2020 04:30:11: 25000000 INFO @ Thu, 16 Apr 2020 04:30:13: 33000000 INFO @ Thu, 16 Apr 2020 04:30:18: 35000000 INFO @ Thu, 16 Apr 2020 04:30:19: 26000000 INFO @ Thu, 16 Apr 2020 04:30:20: 34000000 INFO @ Thu, 16 Apr 2020 04:30:26: 36000000 INFO @ Thu, 16 Apr 2020 04:30:26: 27000000 INFO @ Thu, 16 Apr 2020 04:30:27: 35000000 INFO @ Thu, 16 Apr 2020 04:30:33: 37000000 INFO @ Thu, 16 Apr 2020 04:30:33: 36000000 INFO @ Thu, 16 Apr 2020 04:30:34: 28000000 INFO @ Thu, 16 Apr 2020 04:30:40: 37000000 INFO @ Thu, 16 Apr 2020 04:30:41: 38000000 INFO @ Thu, 16 Apr 2020 04:30:41: 29000000 INFO @ Thu, 16 Apr 2020 04:30:47: 38000000 INFO @ Thu, 16 Apr 2020 04:30:49: 39000000 INFO @ Thu, 16 Apr 2020 04:30:49: 30000000 INFO @ Thu, 16 Apr 2020 04:30:54: 39000000 INFO @ Thu, 16 Apr 2020 04:30:56: 31000000 INFO @ Thu, 16 Apr 2020 04:30:56: 40000000 INFO @ Thu, 16 Apr 2020 04:31:00: 40000000 INFO @ Thu, 16 Apr 2020 04:31:03: 32000000 INFO @ Thu, 16 Apr 2020 04:31:04: 41000000 INFO @ Thu, 16 Apr 2020 04:31:07: 41000000 INFO @ Thu, 16 Apr 2020 04:31:11: 33000000 INFO @ Thu, 16 Apr 2020 04:31:12: 42000000 INFO @ Thu, 16 Apr 2020 04:31:14: 42000000 INFO @ Thu, 16 Apr 2020 04:31:18: 34000000 INFO @ Thu, 16 Apr 2020 04:31:20: 43000000 INFO @ Thu, 16 Apr 2020 04:31:21: 43000000 INFO @ Thu, 16 Apr 2020 04:31:26: 35000000 INFO @ Thu, 16 Apr 2020 04:31:27: 44000000 INFO @ Thu, 16 Apr 2020 04:31:28: 44000000 INFO @ Thu, 16 Apr 2020 04:31:33: 36000000 INFO @ Thu, 16 Apr 2020 04:31:35: 45000000 INFO @ Thu, 16 Apr 2020 04:31:36: 45000000 INFO @ Thu, 16 Apr 2020 04:31:40: 37000000 INFO @ Thu, 16 Apr 2020 04:31:43: 46000000 INFO @ Thu, 16 Apr 2020 04:31:43: 46000000 INFO @ Thu, 16 Apr 2020 04:31:48: 38000000 INFO @ Thu, 16 Apr 2020 04:31:51: 47000000 INFO @ Thu, 16 Apr 2020 04:31:51: 47000000 INFO @ Thu, 16 Apr 2020 04:31:55: 39000000 INFO @ Thu, 16 Apr 2020 04:31:59: 48000000 INFO @ Thu, 16 Apr 2020 04:31:59: 48000000 INFO @ Thu, 16 Apr 2020 04:32:03: 40000000 INFO @ Thu, 16 Apr 2020 04:32:07: 49000000 INFO @ Thu, 16 Apr 2020 04:32:07: 49000000 INFO @ Thu, 16 Apr 2020 04:32:11: 41000000 INFO @ Thu, 16 Apr 2020 04:32:14: 50000000 INFO @ Thu, 16 Apr 2020 04:32:15: 50000000 INFO @ Thu, 16 Apr 2020 04:32:18: 42000000 INFO @ Thu, 16 Apr 2020 04:32:22: 51000000 INFO @ Thu, 16 Apr 2020 04:32:23: 51000000 INFO @ Thu, 16 Apr 2020 04:32:26: 43000000 INFO @ Thu, 16 Apr 2020 04:32:28: 52000000 INFO @ Thu, 16 Apr 2020 04:32:30: 52000000 INFO @ Thu, 16 Apr 2020 04:32:33: 44000000 INFO @ Thu, 16 Apr 2020 04:32:35: 53000000 INFO @ Thu, 16 Apr 2020 04:32:37: 53000000 INFO @ Thu, 16 Apr 2020 04:32:41: 45000000 INFO @ Thu, 16 Apr 2020 04:32:42: 54000000 INFO @ Thu, 16 Apr 2020 04:32:44: 54000000 INFO @ Thu, 16 Apr 2020 04:32:48: 46000000 INFO @ Thu, 16 Apr 2020 04:32:48: 55000000 INFO @ Thu, 16 Apr 2020 04:32:51: 55000000 INFO @ Thu, 16 Apr 2020 04:32:55: 56000000 INFO @ Thu, 16 Apr 2020 04:32:55: 47000000 INFO @ Thu, 16 Apr 2020 04:32:58: 56000000 INFO @ Thu, 16 Apr 2020 04:33:01: 57000000 INFO @ Thu, 16 Apr 2020 04:33:03: 48000000 INFO @ Thu, 16 Apr 2020 04:33:06: 57000000 INFO @ Thu, 16 Apr 2020 04:33:08: 58000000 INFO @ Thu, 16 Apr 2020 04:33:10: 49000000 INFO @ Thu, 16 Apr 2020 04:33:13: 58000000 INFO @ Thu, 16 Apr 2020 04:33:15: 59000000 INFO @ Thu, 16 Apr 2020 04:33:18: 50000000 INFO @ Thu, 16 Apr 2020 04:33:20: 59000000 INFO @ Thu, 16 Apr 2020 04:33:21: 60000000 INFO @ Thu, 16 Apr 2020 04:33:25: 51000000 INFO @ Thu, 16 Apr 2020 04:33:27: 60000000 INFO @ Thu, 16 Apr 2020 04:33:28: 61000000 INFO @ Thu, 16 Apr 2020 04:33:32: 52000000 INFO @ Thu, 16 Apr 2020 04:33:34: 62000000 INFO @ Thu, 16 Apr 2020 04:33:34: 61000000 INFO @ Thu, 16 Apr 2020 04:33:39: 53000000 INFO @ Thu, 16 Apr 2020 04:33:41: 63000000 INFO @ Thu, 16 Apr 2020 04:33:41: 62000000 INFO @ Thu, 16 Apr 2020 04:33:47: 54000000 INFO @ Thu, 16 Apr 2020 04:33:47: 64000000 INFO @ Thu, 16 Apr 2020 04:33:48: 63000000 INFO @ Thu, 16 Apr 2020 04:33:54: 65000000 INFO @ Thu, 16 Apr 2020 04:33:54: 55000000 INFO @ Thu, 16 Apr 2020 04:33:56: 64000000 INFO @ Thu, 16 Apr 2020 04:34:00: 66000000 INFO @ Thu, 16 Apr 2020 04:34:01: 56000000 INFO @ Thu, 16 Apr 2020 04:34:03: 65000000 INFO @ Thu, 16 Apr 2020 04:34:07: 67000000 INFO @ Thu, 16 Apr 2020 04:34:08: 57000000 INFO @ Thu, 16 Apr 2020 04:34:10: 66000000 INFO @ Thu, 16 Apr 2020 04:34:14: 68000000 INFO @ Thu, 16 Apr 2020 04:34:16: 58000000 INFO @ Thu, 16 Apr 2020 04:34:17: 67000000 INFO @ Thu, 16 Apr 2020 04:34:20: 69000000 INFO @ Thu, 16 Apr 2020 04:34:23: 59000000 INFO @ Thu, 16 Apr 2020 04:34:24: 68000000 INFO @ Thu, 16 Apr 2020 04:34:27: 70000000 INFO @ Thu, 16 Apr 2020 04:34:30: 60000000 INFO @ Thu, 16 Apr 2020 04:34:31: 69000000 INFO @ Thu, 16 Apr 2020 04:34:33: 71000000 INFO @ Thu, 16 Apr 2020 04:34:37: 61000000 INFO @ Thu, 16 Apr 2020 04:34:39: 70000000 INFO @ Thu, 16 Apr 2020 04:34:40: 72000000 INFO @ Thu, 16 Apr 2020 04:34:44: 62000000 INFO @ Thu, 16 Apr 2020 04:34:46: 71000000 INFO @ Thu, 16 Apr 2020 04:34:47: 73000000 INFO @ Thu, 16 Apr 2020 04:34:51: 63000000 INFO @ Thu, 16 Apr 2020 04:34:53: 72000000 INFO @ Thu, 16 Apr 2020 04:34:53: 74000000 INFO @ Thu, 16 Apr 2020 04:34:58: 64000000 INFO @ Thu, 16 Apr 2020 04:35:00: 75000000 INFO @ Thu, 16 Apr 2020 04:35:00: 73000000 INFO @ Thu, 16 Apr 2020 04:35:05: 65000000 INFO @ Thu, 16 Apr 2020 04:35:06: 76000000 INFO @ Thu, 16 Apr 2020 04:35:07: 74000000 INFO @ Thu, 16 Apr 2020 04:35:12: 66000000 INFO @ Thu, 16 Apr 2020 04:35:13: 77000000 INFO @ Thu, 16 Apr 2020 04:35:15: 75000000 INFO @ Thu, 16 Apr 2020 04:35:19: 67000000 INFO @ Thu, 16 Apr 2020 04:35:19: 78000000 INFO @ Thu, 16 Apr 2020 04:35:22: 76000000 INFO @ Thu, 16 Apr 2020 04:35:26: 79000000 INFO @ Thu, 16 Apr 2020 04:35:26: 68000000 INFO @ Thu, 16 Apr 2020 04:35:29: 77000000 INFO @ Thu, 16 Apr 2020 04:35:33: 80000000 INFO @ Thu, 16 Apr 2020 04:35:33: 69000000 INFO @ Thu, 16 Apr 2020 04:35:36: 78000000 INFO @ Thu, 16 Apr 2020 04:35:39: 81000000 INFO @ Thu, 16 Apr 2020 04:35:41: 70000000 INFO @ Thu, 16 Apr 2020 04:35:43: 79000000 INFO @ Thu, 16 Apr 2020 04:35:46: 82000000 INFO @ Thu, 16 Apr 2020 04:35:48: 71000000 INFO @ Thu, 16 Apr 2020 04:35:51: 80000000 INFO @ Thu, 16 Apr 2020 04:35:53: 83000000 INFO @ Thu, 16 Apr 2020 04:35:55: 72000000 INFO @ Thu, 16 Apr 2020 04:35:58: 81000000 INFO @ Thu, 16 Apr 2020 04:35:59: 84000000 INFO @ Thu, 16 Apr 2020 04:36:02: 73000000 INFO @ Thu, 16 Apr 2020 04:36:05: 82000000 INFO @ Thu, 16 Apr 2020 04:36:06: 85000000 INFO @ Thu, 16 Apr 2020 04:36:09: 74000000 INFO @ Thu, 16 Apr 2020 04:36:12: 83000000 INFO @ Thu, 16 Apr 2020 04:36:13: 86000000 INFO @ Thu, 16 Apr 2020 04:36:17: 75000000 INFO @ Thu, 16 Apr 2020 04:36:19: 87000000 INFO @ Thu, 16 Apr 2020 04:36:20: 84000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Thu, 16 Apr 2020 04:36:24: 76000000 INFO @ Thu, 16 Apr 2020 04:36:26: 88000000 INFO @ Thu, 16 Apr 2020 04:36:27: 85000000 INFO @ Thu, 16 Apr 2020 04:36:31: 77000000 INFO @ Thu, 16 Apr 2020 04:36:33: 89000000 INFO @ Thu, 16 Apr 2020 04:36:34: 86000000 INFO @ Thu, 16 Apr 2020 04:36:38: 78000000 INFO @ Thu, 16 Apr 2020 04:36:39: 90000000 INFO @ Thu, 16 Apr 2020 04:36:42: 87000000 INFO @ Thu, 16 Apr 2020 04:36:46: 79000000 INFO @ Thu, 16 Apr 2020 04:36:46: 91000000 INFO @ Thu, 16 Apr 2020 04:36:49: 88000000 INFO @ Thu, 16 Apr 2020 04:36:52: 92000000 INFO @ Thu, 16 Apr 2020 04:36:53: 80000000 INFO @ Thu, 16 Apr 2020 04:36:56: 89000000 INFO @ Thu, 16 Apr 2020 04:36:59: 93000000 INFO @ Thu, 16 Apr 2020 04:37:00: 81000000 INFO @ Thu, 16 Apr 2020 04:37:04: 90000000 INFO @ Thu, 16 Apr 2020 04:37:06: 94000000 INFO @ Thu, 16 Apr 2020 04:37:07: 82000000 INFO @ Thu, 16 Apr 2020 04:37:11: 91000000 INFO @ Thu, 16 Apr 2020 04:37:12: 95000000 INFO @ Thu, 16 Apr 2020 04:37:15: 83000000 INFO @ Thu, 16 Apr 2020 04:37:18: 92000000 INFO @ Thu, 16 Apr 2020 04:37:19: 96000000 INFO @ Thu, 16 Apr 2020 04:37:22: 84000000 INFO @ Thu, 16 Apr 2020 04:37:25: 93000000 INFO @ Thu, 16 Apr 2020 04:37:25: 97000000 INFO @ Thu, 16 Apr 2020 04:37:30: 85000000 INFO @ Thu, 16 Apr 2020 04:37:32: 98000000 INFO @ Thu, 16 Apr 2020 04:37:32: 94000000 INFO @ Thu, 16 Apr 2020 04:37:37: 86000000 INFO @ Thu, 16 Apr 2020 04:37:38: 99000000 INFO @ Thu, 16 Apr 2020 04:37:40: 95000000 INFO @ Thu, 16 Apr 2020 04:37:44: 87000000 INFO @ Thu, 16 Apr 2020 04:37:45: 100000000 INFO @ Thu, 16 Apr 2020 04:37:47: 96000000 BigWig に変換しました。 INFO @ Thu, 16 Apr 2020 04:37:52: 101000000 INFO @ Thu, 16 Apr 2020 04:37:52: 88000000 INFO @ Thu, 16 Apr 2020 04:37:54: 97000000 INFO @ Thu, 16 Apr 2020 04:37:58: 102000000 INFO @ Thu, 16 Apr 2020 04:37:59: 89000000 INFO @ Thu, 16 Apr 2020 04:38:01: 98000000 INFO @ Thu, 16 Apr 2020 04:38:05: 103000000 INFO @ Thu, 16 Apr 2020 04:38:07: 90000000 INFO @ Thu, 16 Apr 2020 04:38:08: 99000000 INFO @ Thu, 16 Apr 2020 04:38:11: 104000000 INFO @ Thu, 16 Apr 2020 04:38:14: 91000000 INFO @ Thu, 16 Apr 2020 04:38:16: 100000000 INFO @ Thu, 16 Apr 2020 04:38:16: #1 tag size is determined as 49 bps INFO @ Thu, 16 Apr 2020 04:38:16: #1 tag size = 49 INFO @ Thu, 16 Apr 2020 04:38:16: #1 total tags in treatment: 51240491 INFO @ Thu, 16 Apr 2020 04:38:16: #1 user defined the maximum tags... INFO @ Thu, 16 Apr 2020 04:38:16: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Thu, 16 Apr 2020 04:38:17: #1 tags after filtering in treatment: 33124470 INFO @ Thu, 16 Apr 2020 04:38:17: #1 Redundant rate of treatment: 0.35 INFO @ Thu, 16 Apr 2020 04:38:17: #1 finished! INFO @ Thu, 16 Apr 2020 04:38:17: #2 Build Peak Model... INFO @ Thu, 16 Apr 2020 04:38:17: #2 looking for paired plus/minus strand peaks... INFO @ Thu, 16 Apr 2020 04:38:19: #2 number of paired peaks: 5556 INFO @ Thu, 16 Apr 2020 04:38:19: start model_add_line... INFO @ Thu, 16 Apr 2020 04:38:20: start X-correlation... INFO @ Thu, 16 Apr 2020 04:38:20: end of X-cor INFO @ Thu, 16 Apr 2020 04:38:20: #2 finished! INFO @ Thu, 16 Apr 2020 04:38:20: #2 predicted fragment length is 146 bps INFO @ Thu, 16 Apr 2020 04:38:20: #2 alternative fragment length(s) may be 146 bps INFO @ Thu, 16 Apr 2020 04:38:20: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX5416201/SRX5416201.10_model.r INFO @ Thu, 16 Apr 2020 04:38:20: #3 Call peaks... INFO @ Thu, 16 Apr 2020 04:38:20: #3 Pre-compute pvalue-qvalue table... INFO @ Thu, 16 Apr 2020 04:38:21: 92000000 INFO @ Thu, 16 Apr 2020 04:38:23: 101000000 INFO @ Thu, 16 Apr 2020 04:38:28: 93000000 INFO @ Thu, 16 Apr 2020 04:38:30: 102000000 INFO @ Thu, 16 Apr 2020 04:38:36: 94000000 INFO @ Thu, 16 Apr 2020 04:38:37: 103000000 INFO @ Thu, 16 Apr 2020 04:38:43: 95000000 INFO @ Thu, 16 Apr 2020 04:38:44: 104000000 INFO @ Thu, 16 Apr 2020 04:38:49: #1 tag size is determined as 49 bps INFO @ Thu, 16 Apr 2020 04:38:49: #1 tag size = 49 INFO @ Thu, 16 Apr 2020 04:38:49: #1 total tags in treatment: 51240491 INFO @ Thu, 16 Apr 2020 04:38:49: #1 user defined the maximum tags... INFO @ Thu, 16 Apr 2020 04:38:49: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Thu, 16 Apr 2020 04:38:50: #1 tags after filtering in treatment: 33124470 INFO @ Thu, 16 Apr 2020 04:38:50: #1 Redundant rate of treatment: 0.35 INFO @ Thu, 16 Apr 2020 04:38:50: #1 finished! INFO @ Thu, 16 Apr 2020 04:38:50: #2 Build Peak Model... INFO @ Thu, 16 Apr 2020 04:38:50: #2 looking for paired plus/minus strand peaks... INFO @ Thu, 16 Apr 2020 04:38:50: 96000000 INFO @ Thu, 16 Apr 2020 04:38:52: #2 number of paired peaks: 5556 INFO @ Thu, 16 Apr 2020 04:38:52: start model_add_line... INFO @ Thu, 16 Apr 2020 04:38:53: start X-correlation... INFO @ Thu, 16 Apr 2020 04:38:53: end of X-cor INFO @ Thu, 16 Apr 2020 04:38:53: #2 finished! INFO @ Thu, 16 Apr 2020 04:38:53: #2 predicted fragment length is 146 bps INFO @ Thu, 16 Apr 2020 04:38:53: #2 alternative fragment length(s) may be 146 bps INFO @ Thu, 16 Apr 2020 04:38:53: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX5416201/SRX5416201.05_model.r INFO @ Thu, 16 Apr 2020 04:38:53: #3 Call peaks... INFO @ Thu, 16 Apr 2020 04:38:53: #3 Pre-compute pvalue-qvalue table... INFO @ Thu, 16 Apr 2020 04:38:57: 97000000 INFO @ Thu, 16 Apr 2020 04:39:03: 98000000 INFO @ Thu, 16 Apr 2020 04:39:09: 99000000 INFO @ Thu, 16 Apr 2020 04:39:16: 100000000 INFO @ Thu, 16 Apr 2020 04:39:22: 101000000 INFO @ Thu, 16 Apr 2020 04:39:24: #3 Call peaks for each chromosome... INFO @ Thu, 16 Apr 2020 04:39:29: 102000000 INFO @ Thu, 16 Apr 2020 04:39:35: 103000000 INFO @ Thu, 16 Apr 2020 04:39:42: 104000000 INFO @ Thu, 16 Apr 2020 04:39:46: #1 tag size is determined as 49 bps INFO @ Thu, 16 Apr 2020 04:39:46: #1 tag size = 49 INFO @ Thu, 16 Apr 2020 04:39:46: #1 total tags in treatment: 51240491 INFO @ Thu, 16 Apr 2020 04:39:46: #1 user defined the maximum tags... INFO @ Thu, 16 Apr 2020 04:39:46: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Thu, 16 Apr 2020 04:39:47: #1 tags after filtering in treatment: 33124470 INFO @ Thu, 16 Apr 2020 04:39:47: #1 Redundant rate of treatment: 0.35 INFO @ Thu, 16 Apr 2020 04:39:47: #1 finished! INFO @ Thu, 16 Apr 2020 04:39:47: #2 Build Peak Model... INFO @ Thu, 16 Apr 2020 04:39:47: #2 looking for paired plus/minus strand peaks... INFO @ Thu, 16 Apr 2020 04:39:49: #2 number of paired peaks: 5556 INFO @ Thu, 16 Apr 2020 04:39:49: start model_add_line... INFO @ Thu, 16 Apr 2020 04:39:50: start X-correlation... INFO @ Thu, 16 Apr 2020 04:39:50: end of X-cor INFO @ Thu, 16 Apr 2020 04:39:50: #2 finished! INFO @ Thu, 16 Apr 2020 04:39:50: #2 predicted fragment length is 146 bps INFO @ Thu, 16 Apr 2020 04:39:50: #2 alternative fragment length(s) may be 146 bps INFO @ Thu, 16 Apr 2020 04:39:50: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX5416201/SRX5416201.20_model.r INFO @ Thu, 16 Apr 2020 04:39:50: #3 Call peaks... INFO @ Thu, 16 Apr 2020 04:39:50: #3 Pre-compute pvalue-qvalue table... INFO @ Thu, 16 Apr 2020 04:39:53: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX5416201/SRX5416201.10_peaks.xls INFO @ Thu, 16 Apr 2020 04:39:53: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX5416201/SRX5416201.10_peaks.narrowPeak INFO @ Thu, 16 Apr 2020 04:39:53: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX5416201/SRX5416201.10_summits.bed INFO @ Thu, 16 Apr 2020 04:39:53: Done! pass1 - making usageList (15 chroms): 3 millis pass2 - checking and writing primary data (9512 records, 4 fields): 11 millis CompletedMACS2peakCalling INFO @ Thu, 16 Apr 2020 04:40:00: #3 Call peaks for each chromosome... INFO @ Thu, 16 Apr 2020 04:40:31: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX5416201/SRX5416201.05_peaks.xls INFO @ Thu, 16 Apr 2020 04:40:31: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX5416201/SRX5416201.05_peaks.narrowPeak INFO @ Thu, 16 Apr 2020 04:40:31: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX5416201/SRX5416201.05_summits.bed INFO @ Thu, 16 Apr 2020 04:40:31: Done! pass1 - making usageList (15 chroms): 2 millis pass2 - checking and writing primary data (11085 records, 4 fields): 11 millis CompletedMACS2peakCalling INFO @ Thu, 16 Apr 2020 04:40:58: #3 Call peaks for each chromosome... INFO @ Thu, 16 Apr 2020 04:41:28: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX5416201/SRX5416201.20_peaks.xls INFO @ Thu, 16 Apr 2020 04:41:28: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX5416201/SRX5416201.20_peaks.narrowPeak INFO @ Thu, 16 Apr 2020 04:41:28: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX5416201/SRX5416201.20_summits.bed INFO @ Thu, 16 Apr 2020 04:41:28: Done! pass1 - making usageList (14 chroms): 2 millis pass2 - checking and writing primary data (7634 records, 4 fields): 8 millis CompletedMACS2peakCalling