Job ID = 1305099 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... spots read : 22,615,922 reads read : 22,615,922 reads written : 22,615,922 rm: cannot remove ‘[DSE]RR*’: No such file or directory rm: cannot remove ‘fastqDump_tmp*’: No such file or directory fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:06:28 22615922 reads; of these: 22615922 (100.00%) were unpaired; of these: 2060551 (9.11%) aligned 0 times 17410349 (76.98%) aligned exactly 1 time 3145022 (13.91%) aligned >1 times 90.89% overall alignment rate Time searching: 00:06:28 Overall time: 00:06:28 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 12 files... [bam_rmdupse_core] 4552350 / 20555371 = 0.2215 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Mon, 03 Jun 2019 21:18:22: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX495266/SRX495266.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX495266/SRX495266.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX495266/SRX495266.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX495266/SRX495266.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Mon, 03 Jun 2019 21:18:22: #1 read tag files... INFO @ Mon, 03 Jun 2019 21:18:22: #1 read treatment tags... INFO @ Mon, 03 Jun 2019 21:18:22: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX495266/SRX495266.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX495266/SRX495266.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX495266/SRX495266.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX495266/SRX495266.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Mon, 03 Jun 2019 21:18:22: #1 read tag files... INFO @ Mon, 03 Jun 2019 21:18:22: #1 read treatment tags... INFO @ Mon, 03 Jun 2019 21:18:22: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX495266/SRX495266.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX495266/SRX495266.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX495266/SRX495266.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX495266/SRX495266.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Mon, 03 Jun 2019 21:18:22: #1 read tag files... INFO @ Mon, 03 Jun 2019 21:18:22: #1 read treatment tags... INFO @ Mon, 03 Jun 2019 21:18:31: 1000000 INFO @ Mon, 03 Jun 2019 21:18:32: 1000000 INFO @ Mon, 03 Jun 2019 21:18:32: 1000000 INFO @ Mon, 03 Jun 2019 21:18:39: 2000000 INFO @ Mon, 03 Jun 2019 21:18:41: 2000000 INFO @ Mon, 03 Jun 2019 21:18:41: 2000000 INFO @ Mon, 03 Jun 2019 21:18:47: 3000000 INFO @ Mon, 03 Jun 2019 21:18:51: 3000000 INFO @ Mon, 03 Jun 2019 21:18:51: 3000000 INFO @ Mon, 03 Jun 2019 21:18:55: 4000000 INFO @ Mon, 03 Jun 2019 21:18:59: 4000000 INFO @ Mon, 03 Jun 2019 21:18:59: 4000000 INFO @ Mon, 03 Jun 2019 21:19:03: 5000000 INFO @ Mon, 03 Jun 2019 21:19:09: 5000000 INFO @ Mon, 03 Jun 2019 21:19:09: 5000000 INFO @ Mon, 03 Jun 2019 21:19:11: 6000000 INFO @ Mon, 03 Jun 2019 21:19:18: 6000000 INFO @ Mon, 03 Jun 2019 21:19:18: 6000000 INFO @ Mon, 03 Jun 2019 21:19:19: 7000000 INFO @ Mon, 03 Jun 2019 21:19:27: 7000000 INFO @ Mon, 03 Jun 2019 21:19:27: 8000000 INFO @ Mon, 03 Jun 2019 21:19:27: 7000000 INFO @ Mon, 03 Jun 2019 21:19:36: 9000000 INFO @ Mon, 03 Jun 2019 21:19:37: 8000000 INFO @ Mon, 03 Jun 2019 21:19:37: 8000000 INFO @ Mon, 03 Jun 2019 21:19:43: 10000000 INFO @ Mon, 03 Jun 2019 21:19:46: 9000000 INFO @ Mon, 03 Jun 2019 21:19:46: 9000000 INFO @ Mon, 03 Jun 2019 21:19:51: 11000000 INFO @ Mon, 03 Jun 2019 21:19:55: 10000000 INFO @ Mon, 03 Jun 2019 21:19:55: 10000000 INFO @ Mon, 03 Jun 2019 21:19:59: 12000000 INFO @ Mon, 03 Jun 2019 21:20:04: 11000000 INFO @ Mon, 03 Jun 2019 21:20:04: 11000000 INFO @ Mon, 03 Jun 2019 21:20:07: 13000000 INFO @ Mon, 03 Jun 2019 21:20:13: 12000000 INFO @ Mon, 03 Jun 2019 21:20:13: 12000000 INFO @ Mon, 03 Jun 2019 21:20:15: 14000000 INFO @ Mon, 03 Jun 2019 21:20:22: 13000000 INFO @ Mon, 03 Jun 2019 21:20:22: 13000000 INFO @ Mon, 03 Jun 2019 21:20:24: 15000000 INFO @ Mon, 03 Jun 2019 21:20:30: 14000000 INFO @ Mon, 03 Jun 2019 21:20:31: 14000000 INFO @ Mon, 03 Jun 2019 21:20:32: 16000000 INFO @ Mon, 03 Jun 2019 21:20:32: #1 tag size is determined as 50 bps INFO @ Mon, 03 Jun 2019 21:20:32: #1 tag size = 50 INFO @ Mon, 03 Jun 2019 21:20:32: #1 total tags in treatment: 16003021 INFO @ Mon, 03 Jun 2019 21:20:32: #1 user defined the maximum tags... INFO @ Mon, 03 Jun 2019 21:20:32: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Mon, 03 Jun 2019 21:20:33: #1 tags after filtering in treatment: 16003021 INFO @ Mon, 03 Jun 2019 21:20:33: #1 Redundant rate of treatment: 0.00 INFO @ Mon, 03 Jun 2019 21:20:33: #1 finished! INFO @ Mon, 03 Jun 2019 21:20:33: #2 Build Peak Model... INFO @ Mon, 03 Jun 2019 21:20:33: #2 looking for paired plus/minus strand peaks... INFO @ Mon, 03 Jun 2019 21:20:34: #2 number of paired peaks: 50 WARNING @ Mon, 03 Jun 2019 21:20:34: Too few paired peaks (50) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Mon, 03 Jun 2019 21:20:34: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/dm3/SRX495266/SRX495266.05_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 2 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/dm3/SRX495266/SRX495266.05_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/dm3/SRX495266/SRX495266.05_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/dm3/SRX495266/SRX495266.05_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling INFO @ Mon, 03 Jun 2019 21:20:39: 15000000 INFO @ Mon, 03 Jun 2019 21:20:39: 15000000 INFO @ Mon, 03 Jun 2019 21:20:48: 16000000 INFO @ Mon, 03 Jun 2019 21:20:48: 16000000 INFO @ Mon, 03 Jun 2019 21:20:48: #1 tag size is determined as 50 bps INFO @ Mon, 03 Jun 2019 21:20:48: #1 tag size = 50 INFO @ Mon, 03 Jun 2019 21:20:48: #1 total tags in treatment: 16003021 INFO @ Mon, 03 Jun 2019 21:20:48: #1 user defined the maximum tags... INFO @ Mon, 03 Jun 2019 21:20:48: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Mon, 03 Jun 2019 21:20:48: #1 tag size is determined as 50 bps INFO @ Mon, 03 Jun 2019 21:20:48: #1 tag size = 50 INFO @ Mon, 03 Jun 2019 21:20:48: #1 total tags in treatment: 16003021 INFO @ Mon, 03 Jun 2019 21:20:48: #1 user defined the maximum tags... INFO @ Mon, 03 Jun 2019 21:20:48: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Mon, 03 Jun 2019 21:20:49: #1 tags after filtering in treatment: 16003021 INFO @ Mon, 03 Jun 2019 21:20:49: #1 Redundant rate of treatment: 0.00 INFO @ Mon, 03 Jun 2019 21:20:49: #1 finished! INFO @ Mon, 03 Jun 2019 21:20:49: #2 Build Peak Model... INFO @ Mon, 03 Jun 2019 21:20:49: #2 looking for paired plus/minus strand peaks... INFO @ Mon, 03 Jun 2019 21:20:49: #1 tags after filtering in treatment: 16003021 INFO @ Mon, 03 Jun 2019 21:20:49: #1 Redundant rate of treatment: 0.00 INFO @ Mon, 03 Jun 2019 21:20:49: #1 finished! INFO @ Mon, 03 Jun 2019 21:20:49: #2 Build Peak Model... INFO @ Mon, 03 Jun 2019 21:20:49: #2 looking for paired plus/minus strand peaks... INFO @ Mon, 03 Jun 2019 21:20:50: #2 number of paired peaks: 50 WARNING @ Mon, 03 Jun 2019 21:20:50: Too few paired peaks (50) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Mon, 03 Jun 2019 21:20:50: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/dm3/SRX495266/SRX495266.20_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 2 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/dm3/SRX495266/SRX495266.20_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/dm3/SRX495266/SRX495266.20_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/dm3/SRX495266/SRX495266.20_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling INFO @ Mon, 03 Jun 2019 21:20:50: #2 number of paired peaks: 50 WARNING @ Mon, 03 Jun 2019 21:20:50: Too few paired peaks (50) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Mon, 03 Jun 2019 21:20:50: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/dm3/SRX495266/SRX495266.10_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/dm3/SRX495266/SRX495266.10_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/dm3/SRX495266/SRX495266.10_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/dm3/SRX495266/SRX495266.10_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。