Job ID = 12265258 SRX = SRX4664637 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 31467402 spots for SRR7813064/SRR7813064.sra Written 31467402 spots for SRR7813064/SRR7813064.sra fastq に変換しました。 bowtie でマッピング中... Your job 12265665 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:12:08 31467402 reads; of these: 31467402 (100.00%) were paired; of these: 10922758 (34.71%) aligned concordantly 0 times 11508418 (36.57%) aligned concordantly exactly 1 time 9036226 (28.72%) aligned concordantly >1 times ---- 10922758 pairs aligned concordantly 0 times; of these: 3356699 (30.73%) aligned discordantly 1 time ---- 7566059 pairs aligned 0 times concordantly or discordantly; of these: 15132118 mates make up the pairs; of these: 10311200 (68.14%) aligned 0 times 1264804 (8.36%) aligned exactly 1 time 3556114 (23.50%) aligned >1 times 83.62% overall alignment rate Time searching: 01:12:08 Overall time: 01:12:08 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 24 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 4090676 / 23463557 = 0.1743 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 07:51:26: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX4664637/SRX4664637.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX4664637/SRX4664637.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX4664637/SRX4664637.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX4664637/SRX4664637.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 07:51:26: #1 read tag files... INFO @ Sat, 03 Apr 2021 07:51:26: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 07:51:35: 1000000 INFO @ Sat, 03 Apr 2021 07:51:44: 2000000 WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 07:51:54: 3000000 INFO @ Sat, 03 Apr 2021 07:51:56: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX4664637/SRX4664637.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX4664637/SRX4664637.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX4664637/SRX4664637.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX4664637/SRX4664637.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 07:51:56: #1 read tag files... INFO @ Sat, 03 Apr 2021 07:51:56: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 07:52:03: 4000000 INFO @ Sat, 03 Apr 2021 07:52:03: 1000000 INFO @ Sat, 03 Apr 2021 07:52:10: 2000000 INFO @ Sat, 03 Apr 2021 07:52:12: 5000000 INFO @ Sat, 03 Apr 2021 07:52:17: 3000000 INFO @ Sat, 03 Apr 2021 07:52:21: 6000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 07:52:25: 4000000 INFO @ Sat, 03 Apr 2021 07:52:26: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX4664637/SRX4664637.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX4664637/SRX4664637.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX4664637/SRX4664637.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX4664637/SRX4664637.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 07:52:26: #1 read tag files... INFO @ Sat, 03 Apr 2021 07:52:26: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 07:52:31: 7000000 INFO @ Sat, 03 Apr 2021 07:52:32: 5000000 INFO @ Sat, 03 Apr 2021 07:52:37: 1000000 INFO @ Sat, 03 Apr 2021 07:52:39: 6000000 INFO @ Sat, 03 Apr 2021 07:52:41: 8000000 INFO @ Sat, 03 Apr 2021 07:52:47: 7000000 INFO @ Sat, 03 Apr 2021 07:52:48: 2000000 INFO @ Sat, 03 Apr 2021 07:52:50: 9000000 INFO @ Sat, 03 Apr 2021 07:52:54: 8000000 INFO @ Sat, 03 Apr 2021 07:52:58: 3000000 INFO @ Sat, 03 Apr 2021 07:53:00: 10000000 INFO @ Sat, 03 Apr 2021 07:53:01: 9000000 INFO @ Sat, 03 Apr 2021 07:53:08: 10000000 INFO @ Sat, 03 Apr 2021 07:53:09: 4000000 INFO @ Sat, 03 Apr 2021 07:53:10: 11000000 INFO @ Sat, 03 Apr 2021 07:53:15: 11000000 INFO @ Sat, 03 Apr 2021 07:53:19: 5000000 INFO @ Sat, 03 Apr 2021 07:53:20: 12000000 INFO @ Sat, 03 Apr 2021 07:53:22: 12000000 INFO @ Sat, 03 Apr 2021 07:53:29: 6000000 INFO @ Sat, 03 Apr 2021 07:53:30: 13000000 INFO @ Sat, 03 Apr 2021 07:53:30: 13000000 INFO @ Sat, 03 Apr 2021 07:53:37: 14000000 INFO @ Sat, 03 Apr 2021 07:53:39: 7000000 INFO @ Sat, 03 Apr 2021 07:53:40: 14000000 INFO @ Sat, 03 Apr 2021 07:53:44: 15000000 INFO @ Sat, 03 Apr 2021 07:53:49: 8000000 INFO @ Sat, 03 Apr 2021 07:53:49: 15000000 INFO @ Sat, 03 Apr 2021 07:53:51: 16000000 INFO @ Sat, 03 Apr 2021 07:53:58: 17000000 INFO @ Sat, 03 Apr 2021 07:53:59: 9000000 INFO @ Sat, 03 Apr 2021 07:53:59: 16000000 INFO @ Sat, 03 Apr 2021 07:54:06: 18000000 INFO @ Sat, 03 Apr 2021 07:54:09: 10000000 INFO @ Sat, 03 Apr 2021 07:54:09: 17000000 INFO @ Sat, 03 Apr 2021 07:54:13: 19000000 INFO @ Sat, 03 Apr 2021 07:54:19: 11000000 INFO @ Sat, 03 Apr 2021 07:54:19: 18000000 INFO @ Sat, 03 Apr 2021 07:54:21: 20000000 INFO @ Sat, 03 Apr 2021 07:54:29: 12000000 INFO @ Sat, 03 Apr 2021 07:54:29: 19000000 INFO @ Sat, 03 Apr 2021 07:54:29: 21000000 INFO @ Sat, 03 Apr 2021 07:54:36: 22000000 INFO @ Sat, 03 Apr 2021 07:54:39: 13000000 INFO @ Sat, 03 Apr 2021 07:54:41: 20000000 INFO @ Sat, 03 Apr 2021 07:54:44: 23000000 INFO @ Sat, 03 Apr 2021 07:54:49: 14000000 INFO @ Sat, 03 Apr 2021 07:54:51: 24000000 INFO @ Sat, 03 Apr 2021 07:54:52: 21000000 INFO @ Sat, 03 Apr 2021 07:54:59: 25000000 INFO @ Sat, 03 Apr 2021 07:54:59: 15000000 INFO @ Sat, 03 Apr 2021 07:55:03: 22000000 INFO @ Sat, 03 Apr 2021 07:55:07: 26000000 INFO @ Sat, 03 Apr 2021 07:55:10: 16000000 INFO @ Sat, 03 Apr 2021 07:55:14: 23000000 INFO @ Sat, 03 Apr 2021 07:55:15: 27000000 INFO @ Sat, 03 Apr 2021 07:55:21: 17000000 INFO @ Sat, 03 Apr 2021 07:55:24: 28000000 INFO @ Sat, 03 Apr 2021 07:55:26: 24000000 INFO @ Sat, 03 Apr 2021 07:55:31: 18000000 INFO @ Sat, 03 Apr 2021 07:55:34: 29000000 INFO @ Sat, 03 Apr 2021 07:55:38: 25000000 INFO @ Sat, 03 Apr 2021 07:55:43: 19000000 INFO @ Sat, 03 Apr 2021 07:55:43: 30000000 INFO @ Sat, 03 Apr 2021 07:55:50: 26000000 INFO @ Sat, 03 Apr 2021 07:55:51: 31000000 INFO @ Sat, 03 Apr 2021 07:55:53: 20000000 INFO @ Sat, 03 Apr 2021 07:56:00: 32000000 INFO @ Sat, 03 Apr 2021 07:56:01: 27000000 INFO @ Sat, 03 Apr 2021 07:56:04: 21000000 INFO @ Sat, 03 Apr 2021 07:56:08: 33000000 INFO @ Sat, 03 Apr 2021 07:56:13: 28000000 INFO @ Sat, 03 Apr 2021 07:56:14: 22000000 INFO @ Sat, 03 Apr 2021 07:56:17: 34000000 INFO @ Sat, 03 Apr 2021 07:56:23: 29000000 INFO @ Sat, 03 Apr 2021 07:56:25: 23000000 INFO @ Sat, 03 Apr 2021 07:56:25: 35000000 INFO @ Sat, 03 Apr 2021 07:56:32: 36000000 INFO @ Sat, 03 Apr 2021 07:56:35: 24000000 INFO @ Sat, 03 Apr 2021 07:56:35: 30000000 INFO @ Sat, 03 Apr 2021 07:56:40: 37000000 INFO @ Sat, 03 Apr 2021 07:56:46: 25000000 INFO @ Sat, 03 Apr 2021 07:56:47: 31000000 INFO @ Sat, 03 Apr 2021 07:56:47: 38000000 INFO @ Sat, 03 Apr 2021 07:56:54: 39000000 INFO @ Sat, 03 Apr 2021 07:56:56: 26000000 INFO @ Sat, 03 Apr 2021 07:56:58: 32000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Sat, 03 Apr 2021 07:57:02: 40000000 INFO @ Sat, 03 Apr 2021 07:57:07: 27000000 INFO @ Sat, 03 Apr 2021 07:57:09: 41000000 INFO @ Sat, 03 Apr 2021 07:57:09: 33000000 INFO @ Sat, 03 Apr 2021 07:57:16: 42000000 INFO @ Sat, 03 Apr 2021 07:57:17: 28000000 INFO @ Sat, 03 Apr 2021 07:57:20: 34000000 INFO @ Sat, 03 Apr 2021 07:57:24: 43000000 INFO @ Sat, 03 Apr 2021 07:57:27: 29000000 INFO @ Sat, 03 Apr 2021 07:57:32: 44000000 INFO @ Sat, 03 Apr 2021 07:57:32: 35000000 INFO @ Sat, 03 Apr 2021 07:57:35: #1 tag size is determined as 50 bps INFO @ Sat, 03 Apr 2021 07:57:35: #1 tag size = 50 INFO @ Sat, 03 Apr 2021 07:57:35: #1 total tags in treatment: 16737564 INFO @ Sat, 03 Apr 2021 07:57:35: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 07:57:35: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 07:57:35: #1 tags after filtering in treatment: 13293938 INFO @ Sat, 03 Apr 2021 07:57:35: #1 Redundant rate of treatment: 0.21 INFO @ Sat, 03 Apr 2021 07:57:35: #1 finished! INFO @ Sat, 03 Apr 2021 07:57:35: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 07:57:35: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 07:57:36: #2 number of paired peaks: 393 WARNING @ Sat, 03 Apr 2021 07:57:36: Fewer paired peaks (393) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 393 pairs to build model! INFO @ Sat, 03 Apr 2021 07:57:36: start model_add_line... INFO @ Sat, 03 Apr 2021 07:57:36: start X-correlation... INFO @ Sat, 03 Apr 2021 07:57:36: end of X-cor INFO @ Sat, 03 Apr 2021 07:57:36: #2 finished! INFO @ Sat, 03 Apr 2021 07:57:36: #2 predicted fragment length is 65 bps INFO @ Sat, 03 Apr 2021 07:57:36: #2 alternative fragment length(s) may be 3,65 bps INFO @ Sat, 03 Apr 2021 07:57:36: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX4664637/SRX4664637.10_model.r WARNING @ Sat, 03 Apr 2021 07:57:36: #2 Since the d (65) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 07:57:36: #2 You may need to consider one of the other alternative d(s): 3,65 WARNING @ Sat, 03 Apr 2021 07:57:36: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 07:57:36: #3 Call peaks... INFO @ Sat, 03 Apr 2021 07:57:36: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 07:57:38: 30000000 INFO @ Sat, 03 Apr 2021 07:57:42: 36000000 INFO @ Sat, 03 Apr 2021 07:57:49: 31000000 INFO @ Sat, 03 Apr 2021 07:57:53: 37000000 INFO @ Sat, 03 Apr 2021 07:57:59: 32000000 INFO @ Sat, 03 Apr 2021 07:58:04: 38000000 INFO @ Sat, 03 Apr 2021 07:58:09: 33000000 INFO @ Sat, 03 Apr 2021 07:58:14: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 07:58:14: 39000000 INFO @ Sat, 03 Apr 2021 07:58:19: 34000000 INFO @ Sat, 03 Apr 2021 07:58:24: 40000000 INFO @ Sat, 03 Apr 2021 07:58:29: 35000000 INFO @ Sat, 03 Apr 2021 07:58:33: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX4664637/SRX4664637.10_peaks.xls INFO @ Sat, 03 Apr 2021 07:58:33: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX4664637/SRX4664637.10_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 07:58:33: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX4664637/SRX4664637.10_summits.bed INFO @ Sat, 03 Apr 2021 07:58:33: Done! pass1 - making usageList (14 chroms): 1 millis pass2 - checking and writing primary data (2072 records, 4 fields): 71 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 07:58:34: 41000000 INFO @ Sat, 03 Apr 2021 07:58:40: 36000000 INFO @ Sat, 03 Apr 2021 07:58:44: 42000000 BigWig に変換しました。 INFO @ Sat, 03 Apr 2021 07:58:51: 37000000 INFO @ Sat, 03 Apr 2021 07:58:54: 43000000 INFO @ Sat, 03 Apr 2021 07:59:01: 38000000 INFO @ Sat, 03 Apr 2021 07:59:03: 44000000 INFO @ Sat, 03 Apr 2021 07:59:07: #1 tag size is determined as 50 bps INFO @ Sat, 03 Apr 2021 07:59:07: #1 tag size = 50 INFO @ Sat, 03 Apr 2021 07:59:07: #1 total tags in treatment: 16737564 INFO @ Sat, 03 Apr 2021 07:59:07: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 07:59:07: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 07:59:08: #1 tags after filtering in treatment: 13293938 INFO @ Sat, 03 Apr 2021 07:59:08: #1 Redundant rate of treatment: 0.21 INFO @ Sat, 03 Apr 2021 07:59:08: #1 finished! INFO @ Sat, 03 Apr 2021 07:59:08: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 07:59:08: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 07:59:09: #2 number of paired peaks: 393 WARNING @ Sat, 03 Apr 2021 07:59:09: Fewer paired peaks (393) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 393 pairs to build model! INFO @ Sat, 03 Apr 2021 07:59:09: start model_add_line... INFO @ Sat, 03 Apr 2021 07:59:09: start X-correlation... INFO @ Sat, 03 Apr 2021 07:59:09: end of X-cor INFO @ Sat, 03 Apr 2021 07:59:09: #2 finished! INFO @ Sat, 03 Apr 2021 07:59:09: #2 predicted fragment length is 65 bps INFO @ Sat, 03 Apr 2021 07:59:09: #2 alternative fragment length(s) may be 3,65 bps INFO @ Sat, 03 Apr 2021 07:59:09: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX4664637/SRX4664637.05_model.r WARNING @ Sat, 03 Apr 2021 07:59:09: #2 Since the d (65) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 07:59:09: #2 You may need to consider one of the other alternative d(s): 3,65 WARNING @ Sat, 03 Apr 2021 07:59:09: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 07:59:09: #3 Call peaks... INFO @ Sat, 03 Apr 2021 07:59:09: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 07:59:12: 39000000 INFO @ Sat, 03 Apr 2021 07:59:22: 40000000 INFO @ Sat, 03 Apr 2021 07:59:31: 41000000 INFO @ Sat, 03 Apr 2021 07:59:41: 42000000 INFO @ Sat, 03 Apr 2021 07:59:47: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 07:59:50: 43000000 INFO @ Sat, 03 Apr 2021 08:00:00: 44000000 INFO @ Sat, 03 Apr 2021 08:00:04: #1 tag size is determined as 50 bps INFO @ Sat, 03 Apr 2021 08:00:04: #1 tag size = 50 INFO @ Sat, 03 Apr 2021 08:00:04: #1 total tags in treatment: 16737564 INFO @ Sat, 03 Apr 2021 08:00:04: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 08:00:04: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 08:00:05: #1 tags after filtering in treatment: 13293938 INFO @ Sat, 03 Apr 2021 08:00:05: #1 Redundant rate of treatment: 0.21 INFO @ Sat, 03 Apr 2021 08:00:05: #1 finished! INFO @ Sat, 03 Apr 2021 08:00:05: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 08:00:05: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 08:00:06: #2 number of paired peaks: 393 WARNING @ Sat, 03 Apr 2021 08:00:06: Fewer paired peaks (393) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 393 pairs to build model! INFO @ Sat, 03 Apr 2021 08:00:06: start model_add_line... INFO @ Sat, 03 Apr 2021 08:00:06: start X-correlation... INFO @ Sat, 03 Apr 2021 08:00:06: end of X-cor INFO @ Sat, 03 Apr 2021 08:00:06: #2 finished! INFO @ Sat, 03 Apr 2021 08:00:06: #2 predicted fragment length is 65 bps INFO @ Sat, 03 Apr 2021 08:00:06: #2 alternative fragment length(s) may be 3,65 bps INFO @ Sat, 03 Apr 2021 08:00:06: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX4664637/SRX4664637.20_model.r WARNING @ Sat, 03 Apr 2021 08:00:06: #2 Since the d (65) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 08:00:06: #2 You may need to consider one of the other alternative d(s): 3,65 WARNING @ Sat, 03 Apr 2021 08:00:06: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 08:00:06: #3 Call peaks... INFO @ Sat, 03 Apr 2021 08:00:06: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 08:00:07: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX4664637/SRX4664637.05_peaks.xls INFO @ Sat, 03 Apr 2021 08:00:07: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX4664637/SRX4664637.05_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 08:00:07: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX4664637/SRX4664637.05_summits.bed INFO @ Sat, 03 Apr 2021 08:00:07: Done! pass1 - making usageList (15 chroms): 1 millis pass2 - checking and writing primary data (5030 records, 4 fields): 8 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 08:00:44: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 08:01:04: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX4664637/SRX4664637.20_peaks.xls INFO @ Sat, 03 Apr 2021 08:01:04: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX4664637/SRX4664637.20_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 08:01:04: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX4664637/SRX4664637.20_summits.bed INFO @ Sat, 03 Apr 2021 08:01:04: Done! pass1 - making usageList (13 chroms): 1 millis pass2 - checking and writing primary data (563 records, 4 fields): 3 millis CompletedMACS2peakCalling