Job ID = 12265240 SRX = SRX4664619 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 31070392 spots for SRR7813046/SRR7813046.sra Written 31070392 spots for SRR7813046/SRR7813046.sra fastq に変換しました。 bowtie でマッピング中... Your job 12265607 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:59:16 31070392 reads; of these: 31070392 (100.00%) were paired; of these: 8408496 (27.06%) aligned concordantly 0 times 11616977 (37.39%) aligned concordantly exactly 1 time 11044919 (35.55%) aligned concordantly >1 times ---- 8408496 pairs aligned concordantly 0 times; of these: 2776700 (33.02%) aligned discordantly 1 time ---- 5631796 pairs aligned 0 times concordantly or discordantly; of these: 11263592 mates make up the pairs; of these: 7295831 (64.77%) aligned 0 times 1083066 (9.62%) aligned exactly 1 time 2884695 (25.61%) aligned >1 times 88.26% overall alignment rate Time searching: 00:59:16 Overall time: 00:59:16 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 24 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 8044430 / 25091707 = 0.3206 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 07:34:32: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX4664619/SRX4664619.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX4664619/SRX4664619.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX4664619/SRX4664619.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX4664619/SRX4664619.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 07:34:32: #1 read tag files... INFO @ Sat, 03 Apr 2021 07:34:32: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 07:34:41: 1000000 INFO @ Sat, 03 Apr 2021 07:34:49: 2000000 INFO @ Sat, 03 Apr 2021 07:34:57: 3000000 WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 07:35:02: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX4664619/SRX4664619.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX4664619/SRX4664619.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX4664619/SRX4664619.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX4664619/SRX4664619.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 07:35:02: #1 read tag files... INFO @ Sat, 03 Apr 2021 07:35:02: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 07:35:05: 4000000 INFO @ Sat, 03 Apr 2021 07:35:10: 1000000 INFO @ Sat, 03 Apr 2021 07:35:13: 5000000 INFO @ Sat, 03 Apr 2021 07:35:17: 2000000 INFO @ Sat, 03 Apr 2021 07:35:21: 6000000 INFO @ Sat, 03 Apr 2021 07:35:25: 3000000 INFO @ Sat, 03 Apr 2021 07:35:29: 7000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 07:35:32: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX4664619/SRX4664619.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX4664619/SRX4664619.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX4664619/SRX4664619.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX4664619/SRX4664619.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 07:35:32: #1 read tag files... INFO @ Sat, 03 Apr 2021 07:35:32: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 07:35:33: 4000000 INFO @ Sat, 03 Apr 2021 07:35:38: 8000000 INFO @ Sat, 03 Apr 2021 07:35:40: 5000000 INFO @ Sat, 03 Apr 2021 07:35:41: 1000000 INFO @ Sat, 03 Apr 2021 07:35:46: 9000000 INFO @ Sat, 03 Apr 2021 07:35:47: 6000000 INFO @ Sat, 03 Apr 2021 07:35:49: 2000000 INFO @ Sat, 03 Apr 2021 07:35:54: 10000000 INFO @ Sat, 03 Apr 2021 07:35:55: 7000000 INFO @ Sat, 03 Apr 2021 07:35:57: 3000000 INFO @ Sat, 03 Apr 2021 07:36:02: 8000000 INFO @ Sat, 03 Apr 2021 07:36:03: 11000000 INFO @ Sat, 03 Apr 2021 07:36:06: 4000000 INFO @ Sat, 03 Apr 2021 07:36:09: 9000000 INFO @ Sat, 03 Apr 2021 07:36:11: 12000000 INFO @ Sat, 03 Apr 2021 07:36:14: 5000000 INFO @ Sat, 03 Apr 2021 07:36:16: 10000000 INFO @ Sat, 03 Apr 2021 07:36:19: 13000000 INFO @ Sat, 03 Apr 2021 07:36:23: 6000000 INFO @ Sat, 03 Apr 2021 07:36:23: 11000000 INFO @ Sat, 03 Apr 2021 07:36:28: 14000000 INFO @ Sat, 03 Apr 2021 07:36:31: 12000000 INFO @ Sat, 03 Apr 2021 07:36:31: 7000000 INFO @ Sat, 03 Apr 2021 07:36:36: 15000000 INFO @ Sat, 03 Apr 2021 07:36:38: 13000000 INFO @ Sat, 03 Apr 2021 07:36:39: 8000000 INFO @ Sat, 03 Apr 2021 07:36:45: 16000000 INFO @ Sat, 03 Apr 2021 07:36:45: 14000000 INFO @ Sat, 03 Apr 2021 07:36:47: 9000000 INFO @ Sat, 03 Apr 2021 07:36:52: 15000000 INFO @ Sat, 03 Apr 2021 07:36:53: 17000000 INFO @ Sat, 03 Apr 2021 07:36:55: 10000000 INFO @ Sat, 03 Apr 2021 07:36:59: 16000000 INFO @ Sat, 03 Apr 2021 07:37:01: 18000000 INFO @ Sat, 03 Apr 2021 07:37:04: 11000000 INFO @ Sat, 03 Apr 2021 07:37:07: 17000000 INFO @ Sat, 03 Apr 2021 07:37:10: 19000000 INFO @ Sat, 03 Apr 2021 07:37:12: 12000000 INFO @ Sat, 03 Apr 2021 07:37:14: 18000000 INFO @ Sat, 03 Apr 2021 07:37:18: 20000000 INFO @ Sat, 03 Apr 2021 07:37:20: 13000000 INFO @ Sat, 03 Apr 2021 07:37:21: 19000000 INFO @ Sat, 03 Apr 2021 07:37:26: 21000000 INFO @ Sat, 03 Apr 2021 07:37:28: 14000000 INFO @ Sat, 03 Apr 2021 07:37:28: 20000000 INFO @ Sat, 03 Apr 2021 07:37:34: 22000000 INFO @ Sat, 03 Apr 2021 07:37:36: 21000000 INFO @ Sat, 03 Apr 2021 07:37:36: 15000000 INFO @ Sat, 03 Apr 2021 07:37:42: 23000000 INFO @ Sat, 03 Apr 2021 07:37:43: 22000000 INFO @ Sat, 03 Apr 2021 07:37:45: 16000000 INFO @ Sat, 03 Apr 2021 07:37:50: 24000000 INFO @ Sat, 03 Apr 2021 07:37:51: 23000000 INFO @ Sat, 03 Apr 2021 07:37:53: 17000000 INFO @ Sat, 03 Apr 2021 07:37:58: 24000000 INFO @ Sat, 03 Apr 2021 07:37:58: 25000000 INFO @ Sat, 03 Apr 2021 07:38:01: 18000000 INFO @ Sat, 03 Apr 2021 07:38:05: 25000000 INFO @ Sat, 03 Apr 2021 07:38:07: 26000000 INFO @ Sat, 03 Apr 2021 07:38:10: 19000000 INFO @ Sat, 03 Apr 2021 07:38:12: 26000000 INFO @ Sat, 03 Apr 2021 07:38:15: 27000000 INFO @ Sat, 03 Apr 2021 07:38:18: 20000000 INFO @ Sat, 03 Apr 2021 07:38:19: 27000000 INFO @ Sat, 03 Apr 2021 07:38:23: 28000000 INFO @ Sat, 03 Apr 2021 07:38:25: 28000000 INFO @ Sat, 03 Apr 2021 07:38:26: 21000000 INFO @ Sat, 03 Apr 2021 07:38:31: 29000000 INFO @ Sat, 03 Apr 2021 07:38:32: 29000000 INFO @ Sat, 03 Apr 2021 07:38:35: 22000000 INFO @ Sat, 03 Apr 2021 07:38:39: 30000000 INFO @ Sat, 03 Apr 2021 07:38:39: 30000000 INFO @ Sat, 03 Apr 2021 07:38:43: 23000000 INFO @ Sat, 03 Apr 2021 07:38:47: 31000000 INFO @ Sat, 03 Apr 2021 07:38:48: 31000000 INFO @ Sat, 03 Apr 2021 07:38:53: 24000000 INFO @ Sat, 03 Apr 2021 07:38:54: 32000000 INFO @ Sat, 03 Apr 2021 07:38:56: 32000000 INFO @ Sat, 03 Apr 2021 07:39:01: 33000000 INFO @ Sat, 03 Apr 2021 07:39:02: 25000000 INFO @ Sat, 03 Apr 2021 07:39:04: 33000000 INFO @ Sat, 03 Apr 2021 07:39:08: 34000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Sat, 03 Apr 2021 07:39:10: 26000000 INFO @ Sat, 03 Apr 2021 07:39:12: 34000000 INFO @ Sat, 03 Apr 2021 07:39:15: 35000000 INFO @ Sat, 03 Apr 2021 07:39:18: 27000000 INFO @ Sat, 03 Apr 2021 07:39:19: 35000000 INFO @ Sat, 03 Apr 2021 07:39:22: 36000000 INFO @ Sat, 03 Apr 2021 07:39:26: 28000000 INFO @ Sat, 03 Apr 2021 07:39:27: 36000000 INFO @ Sat, 03 Apr 2021 07:39:29: 37000000 INFO @ Sat, 03 Apr 2021 07:39:34: 29000000 INFO @ Sat, 03 Apr 2021 07:39:35: 37000000 INFO @ Sat, 03 Apr 2021 07:39:36: 38000000 INFO @ Sat, 03 Apr 2021 07:39:41: #1 tag size is determined as 50 bps INFO @ Sat, 03 Apr 2021 07:39:41: #1 tag size = 50 INFO @ Sat, 03 Apr 2021 07:39:41: #1 total tags in treatment: 15128248 INFO @ Sat, 03 Apr 2021 07:39:41: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 07:39:41: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 07:39:42: #1 tags after filtering in treatment: 11535635 INFO @ Sat, 03 Apr 2021 07:39:42: #1 Redundant rate of treatment: 0.24 INFO @ Sat, 03 Apr 2021 07:39:42: #1 finished! INFO @ Sat, 03 Apr 2021 07:39:42: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 07:39:42: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 07:39:42: 30000000 INFO @ Sat, 03 Apr 2021 07:39:43: #2 number of paired peaks: 299 WARNING @ Sat, 03 Apr 2021 07:39:43: Fewer paired peaks (299) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 299 pairs to build model! INFO @ Sat, 03 Apr 2021 07:39:43: start model_add_line... INFO @ Sat, 03 Apr 2021 07:39:43: 38000000 INFO @ Sat, 03 Apr 2021 07:39:43: start X-correlation... INFO @ Sat, 03 Apr 2021 07:39:43: end of X-cor INFO @ Sat, 03 Apr 2021 07:39:43: #2 finished! INFO @ Sat, 03 Apr 2021 07:39:43: #2 predicted fragment length is 70 bps INFO @ Sat, 03 Apr 2021 07:39:43: #2 alternative fragment length(s) may be 4,70,556 bps INFO @ Sat, 03 Apr 2021 07:39:43: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX4664619/SRX4664619.10_model.r WARNING @ Sat, 03 Apr 2021 07:39:43: #2 Since the d (70) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 07:39:43: #2 You may need to consider one of the other alternative d(s): 4,70,556 WARNING @ Sat, 03 Apr 2021 07:39:43: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 07:39:43: #3 Call peaks... INFO @ Sat, 03 Apr 2021 07:39:43: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 07:39:49: #1 tag size is determined as 50 bps INFO @ Sat, 03 Apr 2021 07:39:49: #1 tag size = 50 INFO @ Sat, 03 Apr 2021 07:39:49: #1 total tags in treatment: 15128248 INFO @ Sat, 03 Apr 2021 07:39:49: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 07:39:49: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 07:39:50: #1 tags after filtering in treatment: 11535635 INFO @ Sat, 03 Apr 2021 07:39:50: #1 Redundant rate of treatment: 0.24 INFO @ Sat, 03 Apr 2021 07:39:50: #1 finished! INFO @ Sat, 03 Apr 2021 07:39:50: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 07:39:50: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 07:39:50: 31000000 INFO @ Sat, 03 Apr 2021 07:39:51: #2 number of paired peaks: 299 WARNING @ Sat, 03 Apr 2021 07:39:51: Fewer paired peaks (299) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 299 pairs to build model! INFO @ Sat, 03 Apr 2021 07:39:51: start model_add_line... INFO @ Sat, 03 Apr 2021 07:39:51: start X-correlation... INFO @ Sat, 03 Apr 2021 07:39:51: end of X-cor INFO @ Sat, 03 Apr 2021 07:39:51: #2 finished! INFO @ Sat, 03 Apr 2021 07:39:51: #2 predicted fragment length is 70 bps INFO @ Sat, 03 Apr 2021 07:39:51: #2 alternative fragment length(s) may be 4,70,556 bps INFO @ Sat, 03 Apr 2021 07:39:51: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX4664619/SRX4664619.05_model.r WARNING @ Sat, 03 Apr 2021 07:39:51: #2 Since the d (70) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 07:39:51: #2 You may need to consider one of the other alternative d(s): 4,70,556 WARNING @ Sat, 03 Apr 2021 07:39:51: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 07:39:51: #3 Call peaks... INFO @ Sat, 03 Apr 2021 07:39:51: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 07:39:57: 32000000 INFO @ Sat, 03 Apr 2021 07:40:05: 33000000 INFO @ Sat, 03 Apr 2021 07:40:12: 34000000 INFO @ Sat, 03 Apr 2021 07:40:15: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 07:40:19: 35000000 INFO @ Sat, 03 Apr 2021 07:40:23: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 07:40:27: 36000000 INFO @ Sat, 03 Apr 2021 07:40:32: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX4664619/SRX4664619.10_peaks.xls INFO @ Sat, 03 Apr 2021 07:40:32: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX4664619/SRX4664619.10_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 07:40:32: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX4664619/SRX4664619.10_summits.bed INFO @ Sat, 03 Apr 2021 07:40:32: Done! pass1 - making usageList (14 chroms): 2 millis pass2 - checking and writing primary data (2652 records, 4 fields): 8 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 07:40:34: 37000000 BigWig に変換しました。 INFO @ Sat, 03 Apr 2021 07:40:41: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX4664619/SRX4664619.05_peaks.xls INFO @ Sat, 03 Apr 2021 07:40:41: 38000000 INFO @ Sat, 03 Apr 2021 07:40:41: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX4664619/SRX4664619.05_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 07:40:42: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX4664619/SRX4664619.05_summits.bed INFO @ Sat, 03 Apr 2021 07:40:42: Done! pass1 - making usageList (15 chroms): 4 millis pass2 - checking and writing primary data (6840 records, 4 fields): 13 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 07:40:47: #1 tag size is determined as 50 bps INFO @ Sat, 03 Apr 2021 07:40:47: #1 tag size = 50 INFO @ Sat, 03 Apr 2021 07:40:47: #1 total tags in treatment: 15128248 INFO @ Sat, 03 Apr 2021 07:40:47: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 07:40:47: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 07:40:48: #1 tags after filtering in treatment: 11535635 INFO @ Sat, 03 Apr 2021 07:40:48: #1 Redundant rate of treatment: 0.24 INFO @ Sat, 03 Apr 2021 07:40:48: #1 finished! INFO @ Sat, 03 Apr 2021 07:40:48: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 07:40:48: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 07:40:49: #2 number of paired peaks: 299 WARNING @ Sat, 03 Apr 2021 07:40:49: Fewer paired peaks (299) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 299 pairs to build model! INFO @ Sat, 03 Apr 2021 07:40:49: start model_add_line... INFO @ Sat, 03 Apr 2021 07:40:49: start X-correlation... INFO @ Sat, 03 Apr 2021 07:40:49: end of X-cor INFO @ Sat, 03 Apr 2021 07:40:49: #2 finished! INFO @ Sat, 03 Apr 2021 07:40:49: #2 predicted fragment length is 70 bps INFO @ Sat, 03 Apr 2021 07:40:49: #2 alternative fragment length(s) may be 4,70,556 bps INFO @ Sat, 03 Apr 2021 07:40:49: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX4664619/SRX4664619.20_model.r WARNING @ Sat, 03 Apr 2021 07:40:49: #2 Since the d (70) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 07:40:49: #2 You may need to consider one of the other alternative d(s): 4,70,556 WARNING @ Sat, 03 Apr 2021 07:40:49: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 07:40:49: #3 Call peaks... INFO @ Sat, 03 Apr 2021 07:40:49: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 07:41:21: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 07:41:38: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX4664619/SRX4664619.20_peaks.xls INFO @ Sat, 03 Apr 2021 07:41:38: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX4664619/SRX4664619.20_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 07:41:38: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX4664619/SRX4664619.20_summits.bed INFO @ Sat, 03 Apr 2021 07:41:38: Done! pass1 - making usageList (14 chroms): 1 millis pass2 - checking and writing primary data (662 records, 4 fields): 4 millis CompletedMACS2peakCalling