Job ID = 3785832 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... 2019-11-01T05:33:45 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T05:33:45 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T05:33:45 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T05:33:45 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T05:34:03 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T05:34:03 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T05:35:39 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T05:36:12 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T05:36:12 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T05:37:55 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T05:38:29 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T05:39:18 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T05:39:20 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T05:39:29 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T05:39:49 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T05:41:13 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T05:41:13 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T05:43:21 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T05:43:21 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T05:44:12 fasterq-dump.2.9.6 sys: error unknown while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T05:44:44 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T05:44:44 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T05:45:15 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T05:46:05 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T05:46:07 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T05:46:20 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T05:46:37 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T05:47:01 fasterq-dump.2.9.6 sys: error unknown while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T05:47:15 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T05:48:25 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T05:48:30 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T05:48:41 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T05:48:43 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T05:49:25 fasterq-dump.2.9.6 sys: error unknown while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T05:49:32 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T05:49:46 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T05:50:02 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T05:50:04 fasterq-dump.2.9.6 sys: error unknown while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T05:50:20 fasterq-dump.2.9.6 sys: connection failed while opening file within cryptographic module - mbedtls_ssl_handshake returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T05:50:20 fasterq-dump.2.9.6 sys: connection failed while opening file within cryptographic module - ktls_handshake failed while accessing '130.14.250.26' from '172.19.7.55' 2019-11-01T05:50:20 fasterq-dump.2.9.6 sys: connection failed while opening file within cryptographic module - Failed to create TLS stream for 'sra-download.ncbi.nlm.nih.gov' (130.14.250.26) from '172.19.7.55' 2019-11-01T05:50:46 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T05:52:33 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T05:53:28 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T05:54:18 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T05:54:38 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T05:55:22 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T05:55:22 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T05:57:10 fasterq-dump.2.9.6 sys: error unknown while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T05:57:35 fasterq-dump.2.9.6 sys: error unknown while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T05:57:44 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T05:57:44 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T05:58:57 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T05:58:57 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T05:59:09 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T06:00:39 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T06:00:39 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T06:01:27 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T06:04:47 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) spots read : 96,164,127 reads read : 96,164,127 reads written : 96,164,127 rm: cannot remove ‘[DSE]RR*’: No such file or directory fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:01 Multiseed full-index search: 00:17:48 96164127 reads; of these: 96164127 (100.00%) were unpaired; of these: 52121430 (54.20%) aligned 0 times 37826924 (39.34%) aligned exactly 1 time 6215773 (6.46%) aligned >1 times 45.80% overall alignment rate Time searching: 00:17:49 Overall time: 00:17:49 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 20 files... [bam_rmdupse_core] 18642750 / 44042697 = 0.4233 in library ' ' BAM に変換しました。 Bed ファイルを作成中... INFO @ Fri, 01 Nov 2019 15:58:06: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX4579164/SRX4579164.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX4579164/SRX4579164.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX4579164/SRX4579164.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX4579164/SRX4579164.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 01 Nov 2019 15:58:06: #1 read tag files... INFO @ Fri, 01 Nov 2019 15:58:06: #1 read treatment tags... INFO @ Fri, 01 Nov 2019 15:58:16: 1000000 INFO @ Fri, 01 Nov 2019 15:58:26: 2000000 INFO @ Fri, 01 Nov 2019 15:58:35: 3000000 INFO @ Fri, 01 Nov 2019 15:58:36: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX4579164/SRX4579164.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX4579164/SRX4579164.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX4579164/SRX4579164.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX4579164/SRX4579164.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 01 Nov 2019 15:58:36: #1 read tag files... INFO @ Fri, 01 Nov 2019 15:58:36: #1 read treatment tags... INFO @ Fri, 01 Nov 2019 15:58:46: 1000000 INFO @ Fri, 01 Nov 2019 15:58:46: 4000000 INFO @ Fri, 01 Nov 2019 15:58:55: 2000000 INFO @ Fri, 01 Nov 2019 15:58:56: 5000000 BedGraph に変換中... INFO @ Fri, 01 Nov 2019 15:59:04: 3000000 INFO @ Fri, 01 Nov 2019 15:59:06: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX4579164/SRX4579164.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX4579164/SRX4579164.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX4579164/SRX4579164.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX4579164/SRX4579164.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 01 Nov 2019 15:59:06: #1 read tag files... INFO @ Fri, 01 Nov 2019 15:59:06: #1 read treatment tags... INFO @ Fri, 01 Nov 2019 15:59:06: 6000000 INFO @ Fri, 01 Nov 2019 15:59:12: 4000000 INFO @ Fri, 01 Nov 2019 15:59:15: 1000000 INFO @ Fri, 01 Nov 2019 15:59:16: 7000000 INFO @ Fri, 01 Nov 2019 15:59:21: 5000000 INFO @ Fri, 01 Nov 2019 15:59:24: 2000000 INFO @ Fri, 01 Nov 2019 15:59:26: 8000000 INFO @ Fri, 01 Nov 2019 15:59:30: 6000000 INFO @ Fri, 01 Nov 2019 15:59:33: 3000000 INFO @ Fri, 01 Nov 2019 15:59:36: 9000000 INFO @ Fri, 01 Nov 2019 15:59:39: 7000000 INFO @ Fri, 01 Nov 2019 15:59:43: 4000000 INFO @ Fri, 01 Nov 2019 15:59:46: 10000000 INFO @ Fri, 01 Nov 2019 15:59:49: 8000000 INFO @ Fri, 01 Nov 2019 15:59:53: 5000000 INFO @ Fri, 01 Nov 2019 15:59:56: 11000000 INFO @ Fri, 01 Nov 2019 15:59:59: 9000000 INFO @ Fri, 01 Nov 2019 16:00:03: 6000000 INFO @ Fri, 01 Nov 2019 16:00:06: 12000000 INFO @ Fri, 01 Nov 2019 16:00:09: 10000000 INFO @ Fri, 01 Nov 2019 16:00:12: 7000000 INFO @ Fri, 01 Nov 2019 16:00:16: 13000000 INFO @ Fri, 01 Nov 2019 16:00:19: 11000000 INFO @ Fri, 01 Nov 2019 16:00:22: 8000000 INFO @ Fri, 01 Nov 2019 16:00:25: 14000000 INFO @ Fri, 01 Nov 2019 16:00:29: 12000000 INFO @ Fri, 01 Nov 2019 16:00:32: 9000000 INFO @ Fri, 01 Nov 2019 16:00:36: 15000000 INFO @ Fri, 01 Nov 2019 16:00:38: 13000000 INFO @ Fri, 01 Nov 2019 16:00:41: 10000000 INFO @ Fri, 01 Nov 2019 16:00:46: 16000000 INFO @ Fri, 01 Nov 2019 16:00:47: 14000000 INFO @ Fri, 01 Nov 2019 16:00:50: 11000000 INFO @ Fri, 01 Nov 2019 16:00:57: 17000000 INFO @ Fri, 01 Nov 2019 16:00:57: 15000000 INFO @ Fri, 01 Nov 2019 16:00:59: 12000000 INFO @ Fri, 01 Nov 2019 16:01:08: 16000000 INFO @ Fri, 01 Nov 2019 16:01:08: 18000000 INFO @ Fri, 01 Nov 2019 16:01:09: 13000000 INFO @ Fri, 01 Nov 2019 16:01:18: 17000000 INFO @ Fri, 01 Nov 2019 16:01:18: 19000000 INFO @ Fri, 01 Nov 2019 16:01:19: 14000000 INFO @ Fri, 01 Nov 2019 16:01:28: 18000000 INFO @ Fri, 01 Nov 2019 16:01:29: 20000000 INFO @ Fri, 01 Nov 2019 16:01:29: 15000000 INFO @ Fri, 01 Nov 2019 16:01:38: 19000000 INFO @ Fri, 01 Nov 2019 16:01:39: 21000000 INFO @ Fri, 01 Nov 2019 16:01:39: 16000000 INFO @ Fri, 01 Nov 2019 16:01:48: 20000000 INFO @ Fri, 01 Nov 2019 16:01:49: 22000000 INFO @ Fri, 01 Nov 2019 16:01:50: 17000000 INFO @ Fri, 01 Nov 2019 16:01:58: 21000000 INFO @ Fri, 01 Nov 2019 16:01:59: 18000000 INFO @ Fri, 01 Nov 2019 16:02:00: 23000000 INFO @ Fri, 01 Nov 2019 16:02:07: 22000000 INFO @ Fri, 01 Nov 2019 16:02:08: 19000000 INFO @ Fri, 01 Nov 2019 16:02:11: 24000000 INFO @ Fri, 01 Nov 2019 16:02:16: 23000000 INFO @ Fri, 01 Nov 2019 16:02:17: 20000000 INFO @ Fri, 01 Nov 2019 16:02:21: 25000000 INFO @ Fri, 01 Nov 2019 16:02:25: 24000000 INFO @ Fri, 01 Nov 2019 16:02:25: #1 tag size is determined as 50 bps INFO @ Fri, 01 Nov 2019 16:02:25: #1 tag size = 50 INFO @ Fri, 01 Nov 2019 16:02:25: #1 total tags in treatment: 25399947 INFO @ Fri, 01 Nov 2019 16:02:25: #1 user defined the maximum tags... INFO @ Fri, 01 Nov 2019 16:02:25: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 01 Nov 2019 16:02:26: #1 tags after filtering in treatment: 25399947 INFO @ Fri, 01 Nov 2019 16:02:26: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 01 Nov 2019 16:02:26: #1 finished! INFO @ Fri, 01 Nov 2019 16:02:26: #2 Build Peak Model... INFO @ Fri, 01 Nov 2019 16:02:26: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 01 Nov 2019 16:02:26: 21000000 INFO @ Fri, 01 Nov 2019 16:02:29: #2 number of paired peaks: 8905 INFO @ Fri, 01 Nov 2019 16:02:29: start model_add_line... INFO @ Fri, 01 Nov 2019 16:02:30: start X-correlation... INFO @ Fri, 01 Nov 2019 16:02:30: end of X-cor INFO @ Fri, 01 Nov 2019 16:02:30: #2 finished! INFO @ Fri, 01 Nov 2019 16:02:30: #2 predicted fragment length is 234 bps INFO @ Fri, 01 Nov 2019 16:02:30: #2 alternative fragment length(s) may be 3,234 bps INFO @ Fri, 01 Nov 2019 16:02:30: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX4579164/SRX4579164.05_model.r INFO @ Fri, 01 Nov 2019 16:02:30: #3 Call peaks... INFO @ Fri, 01 Nov 2019 16:02:30: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 01 Nov 2019 16:02:34: 25000000 INFO @ Fri, 01 Nov 2019 16:02:35: 22000000 INFO @ Fri, 01 Nov 2019 16:02:38: #1 tag size is determined as 50 bps INFO @ Fri, 01 Nov 2019 16:02:38: #1 tag size = 50 INFO @ Fri, 01 Nov 2019 16:02:38: #1 total tags in treatment: 25399947 INFO @ Fri, 01 Nov 2019 16:02:38: #1 user defined the maximum tags... INFO @ Fri, 01 Nov 2019 16:02:38: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 01 Nov 2019 16:02:38: #1 tags after filtering in treatment: 25399947 INFO @ Fri, 01 Nov 2019 16:02:38: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 01 Nov 2019 16:02:38: #1 finished! INFO @ Fri, 01 Nov 2019 16:02:38: #2 Build Peak Model... INFO @ Fri, 01 Nov 2019 16:02:38: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 01 Nov 2019 16:02:42: #2 number of paired peaks: 8905 INFO @ Fri, 01 Nov 2019 16:02:42: start model_add_line... INFO @ Fri, 01 Nov 2019 16:02:42: start X-correlation... INFO @ Fri, 01 Nov 2019 16:02:42: end of X-cor INFO @ Fri, 01 Nov 2019 16:02:42: #2 finished! INFO @ Fri, 01 Nov 2019 16:02:42: #2 predicted fragment length is 234 bps INFO @ Fri, 01 Nov 2019 16:02:42: #2 alternative fragment length(s) may be 3,234 bps INFO @ Fri, 01 Nov 2019 16:02:42: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX4579164/SRX4579164.10_model.r INFO @ Fri, 01 Nov 2019 16:02:42: #3 Call peaks... INFO @ Fri, 01 Nov 2019 16:02:42: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 01 Nov 2019 16:02:44: 23000000 INFO @ Fri, 01 Nov 2019 16:02:53: 24000000 INFO @ Fri, 01 Nov 2019 16:03:01: 25000000 INFO @ Fri, 01 Nov 2019 16:03:05: #1 tag size is determined as 50 bps INFO @ Fri, 01 Nov 2019 16:03:05: #1 tag size = 50 INFO @ Fri, 01 Nov 2019 16:03:05: #1 total tags in treatment: 25399947 INFO @ Fri, 01 Nov 2019 16:03:05: #1 user defined the maximum tags... INFO @ Fri, 01 Nov 2019 16:03:05: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 01 Nov 2019 16:03:05: #1 tags after filtering in treatment: 25399947 INFO @ Fri, 01 Nov 2019 16:03:05: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 01 Nov 2019 16:03:05: #1 finished! INFO @ Fri, 01 Nov 2019 16:03:05: #2 Build Peak Model... INFO @ Fri, 01 Nov 2019 16:03:05: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 01 Nov 2019 16:03:09: #2 number of paired peaks: 8905 INFO @ Fri, 01 Nov 2019 16:03:09: start model_add_line... INFO @ Fri, 01 Nov 2019 16:03:09: start X-correlation... INFO @ Fri, 01 Nov 2019 16:03:09: end of X-cor INFO @ Fri, 01 Nov 2019 16:03:09: #2 finished! INFO @ Fri, 01 Nov 2019 16:03:09: #2 predicted fragment length is 234 bps INFO @ Fri, 01 Nov 2019 16:03:09: #2 alternative fragment length(s) may be 3,234 bps INFO @ Fri, 01 Nov 2019 16:03:09: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX4579164/SRX4579164.20_model.r INFO @ Fri, 01 Nov 2019 16:03:09: #3 Call peaks... INFO @ Fri, 01 Nov 2019 16:03:09: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 01 Nov 2019 16:03:59: #3 Call peaks for each chromosome... INFO @ Fri, 01 Nov 2019 16:04:09: #3 Call peaks for each chromosome... BedGraph に変換しました。 BigWig に変換中... INFO @ Fri, 01 Nov 2019 16:04:27: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX4579164/SRX4579164.05_peaks.xls INFO @ Fri, 01 Nov 2019 16:04:27: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX4579164/SRX4579164.05_peaks.narrowPeak INFO @ Fri, 01 Nov 2019 16:04:27: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX4579164/SRX4579164.05_summits.bed INFO @ Fri, 01 Nov 2019 16:04:27: Done! pass1 - making usageList (15 chroms): 5 millis pass2 - checking and writing primary data (10794 records, 4 fields): 19 millis CompletedMACS2peakCalling INFO @ Fri, 01 Nov 2019 16:04:36: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX4579164/SRX4579164.10_peaks.xls INFO @ Fri, 01 Nov 2019 16:04:36: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX4579164/SRX4579164.10_peaks.narrowPeak INFO @ Fri, 01 Nov 2019 16:04:36: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX4579164/SRX4579164.10_summits.bed INFO @ Fri, 01 Nov 2019 16:04:36: Done! pass1 - making usageList (15 chroms): 2 millis pass2 - checking and writing primary data (8172 records, 4 fields): 12 millis CompletedMACS2peakCalling INFO @ Fri, 01 Nov 2019 16:04:36: #3 Call peaks for each chromosome... INFO @ Fri, 01 Nov 2019 16:05:03: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX4579164/SRX4579164.20_peaks.xls INFO @ Fri, 01 Nov 2019 16:05:03: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX4579164/SRX4579164.20_peaks.narrowPeak INFO @ Fri, 01 Nov 2019 16:05:03: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX4579164/SRX4579164.20_summits.bed INFO @ Fri, 01 Nov 2019 16:05:03: Done! pass1 - making usageList (14 chroms): 2 millis pass2 - checking and writing primary data (4751 records, 4 fields): 7 millis CompletedMACS2peakCalling BigWig に変換しました。