Job ID = 11158509 sra ファイルのダウンロード中... Completed: 1337710K bytes transferred in 26 seconds (414049K bits/sec), in 1 file. sra ファイルのダウンロードが完了しました。 Read layout: PAIRED fastq に変換中... Read 38684996 spots for /home/okishinya/chipatlas/results/dm3/SRX4546297/SRR7685794.sra Written 38684996 spots for /home/okishinya/chipatlas/results/dm3/SRX4546297/SRR7685794.sra rm: cannot remove `[DSE]RX*': そのようなファイルやディレクトリはありません rm: cannot remove `[DSE]RR*.fastq': そのようなファイルやディレクトリはありません fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:01 Multiseed full-index search: 01:04:29 38684996 reads; of these: 38684996 (100.00%) were paired; of these: 6754415 (17.46%) aligned concordantly 0 times 22441876 (58.01%) aligned concordantly exactly 1 time 9488705 (24.53%) aligned concordantly >1 times ---- 6754415 pairs aligned concordantly 0 times; of these: 2453340 (36.32%) aligned discordantly 1 time ---- 4301075 pairs aligned 0 times concordantly or discordantly; of these: 8602150 mates make up the pairs; of these: 5423839 (63.05%) aligned 0 times 1079650 (12.55%) aligned exactly 1 time 2098661 (24.40%) aligned >1 times 92.99% overall alignment rate Time searching: 01:04:30 Overall time: 01:04:30 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 32 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 7697133 / 34017323 = 0.2263 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Tue, 04 Sep 2018 11:00:45: # Command line: callpeak -t SRX4546297.bam -f BAM -g dm -n SRX4546297.20 -q 1e-20 # ARGUMENTS LIST: # name = SRX4546297.20 # format = BAM # ChIP-seq file = ['SRX4546297.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 04 Sep 2018 11:00:45: # Command line: callpeak -t SRX4546297.bam -f BAM -g dm -n SRX4546297.10 -q 1e-10 # ARGUMENTS LIST: # name = SRX4546297.10 # format = BAM # ChIP-seq file = ['SRX4546297.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 04 Sep 2018 11:00:45: # Command line: callpeak -t SRX4546297.bam -f BAM -g dm -n SRX4546297.05 -q 1e-05 # ARGUMENTS LIST: # name = SRX4546297.05 # format = BAM # ChIP-seq file = ['SRX4546297.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 04 Sep 2018 11:00:45: #1 read tag files... INFO @ Tue, 04 Sep 2018 11:00:45: #1 read tag files... INFO @ Tue, 04 Sep 2018 11:00:45: #1 read tag files... INFO @ Tue, 04 Sep 2018 11:00:45: #1 read treatment tags... INFO @ Tue, 04 Sep 2018 11:00:45: #1 read treatment tags... INFO @ Tue, 04 Sep 2018 11:00:45: #1 read treatment tags... INFO @ Tue, 04 Sep 2018 11:00:50: 1000000 INFO @ Tue, 04 Sep 2018 11:00:50: 1000000 INFO @ Tue, 04 Sep 2018 11:00:50: 1000000 INFO @ Tue, 04 Sep 2018 11:00:56: 2000000 INFO @ Tue, 04 Sep 2018 11:00:56: 2000000 INFO @ Tue, 04 Sep 2018 11:00:56: 2000000 INFO @ Tue, 04 Sep 2018 11:01:01: 3000000 INFO @ Tue, 04 Sep 2018 11:01:01: 3000000 INFO @ Tue, 04 Sep 2018 11:01:01: 3000000 INFO @ Tue, 04 Sep 2018 11:01:06: 4000000 INFO @ Tue, 04 Sep 2018 11:01:06: 4000000 INFO @ Tue, 04 Sep 2018 11:01:06: 4000000 INFO @ Tue, 04 Sep 2018 11:01:11: 5000000 INFO @ Tue, 04 Sep 2018 11:01:11: 5000000 INFO @ Tue, 04 Sep 2018 11:01:12: 5000000 INFO @ Tue, 04 Sep 2018 11:01:17: 6000000 INFO @ Tue, 04 Sep 2018 11:01:17: 6000000 INFO @ Tue, 04 Sep 2018 11:01:17: 6000000 INFO @ Tue, 04 Sep 2018 11:01:22: 7000000 INFO @ Tue, 04 Sep 2018 11:01:22: 7000000 INFO @ Tue, 04 Sep 2018 11:01:22: 7000000 INFO @ Tue, 04 Sep 2018 11:01:27: 8000000 INFO @ Tue, 04 Sep 2018 11:01:27: 8000000 INFO @ Tue, 04 Sep 2018 11:01:27: 8000000 INFO @ Tue, 04 Sep 2018 11:01:32: 9000000 INFO @ Tue, 04 Sep 2018 11:01:32: 9000000 INFO @ Tue, 04 Sep 2018 11:01:33: 9000000 INFO @ Tue, 04 Sep 2018 11:01:37: 10000000 INFO @ Tue, 04 Sep 2018 11:01:38: 10000000 INFO @ Tue, 04 Sep 2018 11:01:38: 10000000 INFO @ Tue, 04 Sep 2018 11:01:42: 11000000 INFO @ Tue, 04 Sep 2018 11:01:43: 11000000 INFO @ Tue, 04 Sep 2018 11:01:43: 11000000 INFO @ Tue, 04 Sep 2018 11:01:48: 12000000 INFO @ Tue, 04 Sep 2018 11:01:48: 12000000 INFO @ Tue, 04 Sep 2018 11:01:48: 12000000 INFO @ Tue, 04 Sep 2018 11:01:53: 13000000 INFO @ Tue, 04 Sep 2018 11:01:53: 13000000 INFO @ Tue, 04 Sep 2018 11:01:54: 13000000 INFO @ Tue, 04 Sep 2018 11:01:58: 14000000 INFO @ Tue, 04 Sep 2018 11:01:59: 14000000 INFO @ Tue, 04 Sep 2018 11:01:59: 14000000 INFO @ Tue, 04 Sep 2018 11:02:03: 15000000 INFO @ Tue, 04 Sep 2018 11:02:04: 15000000 INFO @ Tue, 04 Sep 2018 11:02:04: 15000000 INFO @ Tue, 04 Sep 2018 11:02:08: 16000000 INFO @ Tue, 04 Sep 2018 11:02:09: 16000000 INFO @ Tue, 04 Sep 2018 11:02:09: 16000000 INFO @ Tue, 04 Sep 2018 11:02:13: 17000000 INFO @ Tue, 04 Sep 2018 11:02:14: 17000000 INFO @ Tue, 04 Sep 2018 11:02:15: 17000000 INFO @ Tue, 04 Sep 2018 11:02:18: 18000000 INFO @ Tue, 04 Sep 2018 11:02:20: 18000000 INFO @ Tue, 04 Sep 2018 11:02:20: 18000000 INFO @ Tue, 04 Sep 2018 11:02:24: 19000000 INFO @ Tue, 04 Sep 2018 11:02:25: 19000000 INFO @ Tue, 04 Sep 2018 11:02:25: 19000000 INFO @ Tue, 04 Sep 2018 11:02:29: 20000000 INFO @ Tue, 04 Sep 2018 11:02:30: 20000000 INFO @ Tue, 04 Sep 2018 11:02:30: 20000000 INFO @ Tue, 04 Sep 2018 11:02:34: 21000000 INFO @ Tue, 04 Sep 2018 11:02:35: 21000000 INFO @ Tue, 04 Sep 2018 11:02:36: 21000000 INFO @ Tue, 04 Sep 2018 11:02:39: 22000000 INFO @ Tue, 04 Sep 2018 11:02:41: 22000000 INFO @ Tue, 04 Sep 2018 11:02:41: 22000000 INFO @ Tue, 04 Sep 2018 11:02:44: 23000000 INFO @ Tue, 04 Sep 2018 11:02:46: 23000000 INFO @ Tue, 04 Sep 2018 11:02:46: 23000000 INFO @ Tue, 04 Sep 2018 11:02:49: 24000000 INFO @ Tue, 04 Sep 2018 11:02:51: 24000000 INFO @ Tue, 04 Sep 2018 11:02:52: 24000000 INFO @ Tue, 04 Sep 2018 11:02:54: 25000000 INFO @ Tue, 04 Sep 2018 11:02:56: 25000000 INFO @ Tue, 04 Sep 2018 11:02:57: 25000000 INFO @ Tue, 04 Sep 2018 11:02:59: 26000000 INFO @ Tue, 04 Sep 2018 11:03:02: 26000000 INFO @ Tue, 04 Sep 2018 11:03:02: 26000000 INFO @ Tue, 04 Sep 2018 11:03:05: 27000000 INFO @ Tue, 04 Sep 2018 11:03:07: 27000000 INFO @ Tue, 04 Sep 2018 11:03:07: 27000000 INFO @ Tue, 04 Sep 2018 11:03:10: 28000000 INFO @ Tue, 04 Sep 2018 11:03:12: 28000000 INFO @ Tue, 04 Sep 2018 11:03:13: 28000000 INFO @ Tue, 04 Sep 2018 11:03:15: 29000000 INFO @ Tue, 04 Sep 2018 11:03:18: 29000000 INFO @ Tue, 04 Sep 2018 11:03:18: 29000000 INFO @ Tue, 04 Sep 2018 11:03:20: 30000000 INFO @ Tue, 04 Sep 2018 11:03:23: 30000000 INFO @ Tue, 04 Sep 2018 11:03:23: 30000000 INFO @ Tue, 04 Sep 2018 11:03:25: 31000000 INFO @ Tue, 04 Sep 2018 11:03:28: 31000000 INFO @ Tue, 04 Sep 2018 11:03:28: 31000000 INFO @ Tue, 04 Sep 2018 11:03:30: 32000000 INFO @ Tue, 04 Sep 2018 11:03:33: 32000000 INFO @ Tue, 04 Sep 2018 11:03:34: 32000000 INFO @ Tue, 04 Sep 2018 11:03:35: 33000000 INFO @ Tue, 04 Sep 2018 11:03:39: 33000000 INFO @ Tue, 04 Sep 2018 11:03:39: 33000000 INFO @ Tue, 04 Sep 2018 11:03:40: 34000000 INFO @ Tue, 04 Sep 2018 11:03:44: 34000000 INFO @ Tue, 04 Sep 2018 11:03:44: 34000000 INFO @ Tue, 04 Sep 2018 11:03:45: 35000000 INFO @ Tue, 04 Sep 2018 11:03:49: 35000000 INFO @ Tue, 04 Sep 2018 11:03:49: 35000000 INFO @ Tue, 04 Sep 2018 11:03:51: 36000000 INFO @ Tue, 04 Sep 2018 11:03:54: 36000000 INFO @ Tue, 04 Sep 2018 11:03:55: 36000000 INFO @ Tue, 04 Sep 2018 11:03:56: 37000000 INFO @ Tue, 04 Sep 2018 11:04:00: 37000000 INFO @ Tue, 04 Sep 2018 11:04:00: 37000000 INFO @ Tue, 04 Sep 2018 11:04:01: 38000000 INFO @ Tue, 04 Sep 2018 11:04:05: 38000000 INFO @ Tue, 04 Sep 2018 11:04:05: 38000000 INFO @ Tue, 04 Sep 2018 11:04:06: 39000000 INFO @ Tue, 04 Sep 2018 11:04:10: 39000000 INFO @ Tue, 04 Sep 2018 11:04:10: 39000000 INFO @ Tue, 04 Sep 2018 11:04:11: 40000000 INFO @ Tue, 04 Sep 2018 11:04:15: 40000000 INFO @ Tue, 04 Sep 2018 11:04:16: 40000000 INFO @ Tue, 04 Sep 2018 11:04:16: 41000000 INFO @ Tue, 04 Sep 2018 11:04:20: 41000000 INFO @ Tue, 04 Sep 2018 11:04:21: 41000000 INFO @ Tue, 04 Sep 2018 11:04:21: 42000000 INFO @ Tue, 04 Sep 2018 11:04:26: 42000000 INFO @ Tue, 04 Sep 2018 11:04:26: 42000000 INFO @ Tue, 04 Sep 2018 11:04:26: 43000000 INFO @ Tue, 04 Sep 2018 11:04:31: 43000000 INFO @ Tue, 04 Sep 2018 11:04:31: 44000000 INFO @ Tue, 04 Sep 2018 11:04:31: 43000000 INFO @ Tue, 04 Sep 2018 11:04:36: 44000000 INFO @ Tue, 04 Sep 2018 11:04:36: 45000000 INFO @ Tue, 04 Sep 2018 11:04:36: 44000000 INFO @ Tue, 04 Sep 2018 11:04:41: 46000000 INFO @ Tue, 04 Sep 2018 11:04:41: 45000000 INFO @ Tue, 04 Sep 2018 11:04:42: 45000000 INFO @ Tue, 04 Sep 2018 11:04:46: 47000000 INFO @ Tue, 04 Sep 2018 11:04:47: 46000000 INFO @ Tue, 04 Sep 2018 11:04:47: 46000000 INFO @ Tue, 04 Sep 2018 11:04:51: 48000000 INFO @ Tue, 04 Sep 2018 11:04:52: 47000000 INFO @ Tue, 04 Sep 2018 11:04:52: 47000000 INFO @ Tue, 04 Sep 2018 11:04:57: 49000000 INFO @ Tue, 04 Sep 2018 11:04:57: 48000000 INFO @ Tue, 04 Sep 2018 11:04:58: 48000000 INFO @ Tue, 04 Sep 2018 11:05:02: 50000000 INFO @ Tue, 04 Sep 2018 11:05:02: 49000000 INFO @ Tue, 04 Sep 2018 11:05:03: 49000000 INFO @ Tue, 04 Sep 2018 11:05:07: 51000000 INFO @ Tue, 04 Sep 2018 11:05:08: 50000000 INFO @ Tue, 04 Sep 2018 11:05:08: 50000000 INFO @ Tue, 04 Sep 2018 11:05:12: 52000000 INFO @ Tue, 04 Sep 2018 11:05:13: 51000000 INFO @ Tue, 04 Sep 2018 11:05:13: 51000000 INFO @ Tue, 04 Sep 2018 11:05:17: 53000000 INFO @ Tue, 04 Sep 2018 11:05:18: 52000000 INFO @ Tue, 04 Sep 2018 11:05:18: 52000000 INFO @ Tue, 04 Sep 2018 11:05:22: 54000000 INFO @ Tue, 04 Sep 2018 11:05:23: 53000000 INFO @ Tue, 04 Sep 2018 11:05:24: 53000000 INFO @ Tue, 04 Sep 2018 11:05:27: 55000000 INFO @ Tue, 04 Sep 2018 11:05:28: 54000000 INFO @ Tue, 04 Sep 2018 11:05:29: 54000000 INFO @ Tue, 04 Sep 2018 11:05:32: 56000000 INFO @ Tue, 04 Sep 2018 11:05:34: 55000000 INFO @ Tue, 04 Sep 2018 11:05:34: 55000000 INFO @ Tue, 04 Sep 2018 11:05:35: #1 tag size is determined as 51 bps INFO @ Tue, 04 Sep 2018 11:05:35: #1 tag size = 51 INFO @ Tue, 04 Sep 2018 11:05:35: #1 total tags in treatment: 24573811 INFO @ Tue, 04 Sep 2018 11:05:35: #1 user defined the maximum tags... INFO @ Tue, 04 Sep 2018 11:05:35: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 04 Sep 2018 11:05:36: #1 tags after filtering in treatment: 14428658 INFO @ Tue, 04 Sep 2018 11:05:36: #1 Redundant rate of treatment: 0.41 INFO @ Tue, 04 Sep 2018 11:05:36: #1 finished! INFO @ Tue, 04 Sep 2018 11:05:36: #2 Build Peak Model... INFO @ Tue, 04 Sep 2018 11:05:36: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 04 Sep 2018 11:05:37: #2 number of paired peaks: 2194 INFO @ Tue, 04 Sep 2018 11:05:37: start model_add_line... INFO @ Tue, 04 Sep 2018 11:05:37: start X-correlation... INFO @ Tue, 04 Sep 2018 11:05:37: end of X-cor INFO @ Tue, 04 Sep 2018 11:05:37: #2 finished! INFO @ Tue, 04 Sep 2018 11:05:37: #2 predicted fragment length is 91 bps INFO @ Tue, 04 Sep 2018 11:05:37: #2 alternative fragment length(s) may be 91 bps INFO @ Tue, 04 Sep 2018 11:05:37: #2.2 Generate R script for model : SRX4546297.10_model.r WARNING @ Tue, 04 Sep 2018 11:05:37: #2 Since the d (91) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 04 Sep 2018 11:05:37: #2 You may need to consider one of the other alternative d(s): 91 WARNING @ Tue, 04 Sep 2018 11:05:37: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 04 Sep 2018 11:05:37: #3 Call peaks... INFO @ Tue, 04 Sep 2018 11:05:37: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 04 Sep 2018 11:05:39: 56000000 INFO @ Tue, 04 Sep 2018 11:05:39: 56000000 INFO @ Tue, 04 Sep 2018 11:05:42: #1 tag size is determined as 51 bps INFO @ Tue, 04 Sep 2018 11:05:42: #1 tag size = 51 INFO @ Tue, 04 Sep 2018 11:05:42: #1 total tags in treatment: 24573811 INFO @ Tue, 04 Sep 2018 11:05:42: #1 user defined the maximum tags... INFO @ Tue, 04 Sep 2018 11:05:42: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 04 Sep 2018 11:05:42: #1 tag size is determined as 51 bps INFO @ Tue, 04 Sep 2018 11:05:42: #1 tag size = 51 INFO @ Tue, 04 Sep 2018 11:05:42: #1 total tags in treatment: 24573811 INFO @ Tue, 04 Sep 2018 11:05:42: #1 user defined the maximum tags... INFO @ Tue, 04 Sep 2018 11:05:42: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 04 Sep 2018 11:05:43: #1 tags after filtering in treatment: 14428658 INFO @ Tue, 04 Sep 2018 11:05:43: #1 Redundant rate of treatment: 0.41 INFO @ Tue, 04 Sep 2018 11:05:43: #1 finished! INFO @ Tue, 04 Sep 2018 11:05:43: #2 Build Peak Model... INFO @ Tue, 04 Sep 2018 11:05:43: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 04 Sep 2018 11:05:43: #1 tags after filtering in treatment: 14428658 INFO @ Tue, 04 Sep 2018 11:05:43: #1 Redundant rate of treatment: 0.41 INFO @ Tue, 04 Sep 2018 11:05:43: #1 finished! INFO @ Tue, 04 Sep 2018 11:05:43: #2 Build Peak Model... INFO @ Tue, 04 Sep 2018 11:05:43: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 04 Sep 2018 11:05:44: #2 number of paired peaks: 2194 INFO @ Tue, 04 Sep 2018 11:05:44: start model_add_line... INFO @ Tue, 04 Sep 2018 11:05:44: start X-correlation... INFO @ Tue, 04 Sep 2018 11:05:44: end of X-cor INFO @ Tue, 04 Sep 2018 11:05:44: #2 finished! INFO @ Tue, 04 Sep 2018 11:05:44: #2 predicted fragment length is 91 bps INFO @ Tue, 04 Sep 2018 11:05:44: #2 alternative fragment length(s) may be 91 bps INFO @ Tue, 04 Sep 2018 11:05:44: #2.2 Generate R script for model : SRX4546297.20_model.r WARNING @ Tue, 04 Sep 2018 11:05:44: #2 Since the d (91) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 04 Sep 2018 11:05:44: #2 You may need to consider one of the other alternative d(s): 91 WARNING @ Tue, 04 Sep 2018 11:05:44: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 04 Sep 2018 11:05:44: #3 Call peaks... INFO @ Tue, 04 Sep 2018 11:05:44: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 04 Sep 2018 11:05:44: #2 number of paired peaks: 2194 INFO @ Tue, 04 Sep 2018 11:05:44: start model_add_line... INFO @ Tue, 04 Sep 2018 11:05:44: start X-correlation... INFO @ Tue, 04 Sep 2018 11:05:44: end of X-cor INFO @ Tue, 04 Sep 2018 11:05:44: #2 finished! INFO @ Tue, 04 Sep 2018 11:05:44: #2 predicted fragment length is 91 bps INFO @ Tue, 04 Sep 2018 11:05:44: #2 alternative fragment length(s) may be 91 bps INFO @ Tue, 04 Sep 2018 11:05:44: #2.2 Generate R script for model : SRX4546297.05_model.r WARNING @ Tue, 04 Sep 2018 11:05:44: #2 Since the d (91) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 04 Sep 2018 11:05:44: #2 You may need to consider one of the other alternative d(s): 91 WARNING @ Tue, 04 Sep 2018 11:05:44: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 04 Sep 2018 11:05:44: #3 Call peaks... INFO @ Tue, 04 Sep 2018 11:05:44: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 04 Sep 2018 11:06:09: #3 Call peaks for each chromosome... INFO @ Tue, 04 Sep 2018 11:06:15: #3 Call peaks for each chromosome... INFO @ Tue, 04 Sep 2018 11:06:18: #3 Call peaks for each chromosome... INFO @ Tue, 04 Sep 2018 11:06:30: #4 Write output xls file... SRX4546297.10_peaks.xls INFO @ Tue, 04 Sep 2018 11:06:30: #4 Write peak in narrowPeak format file... SRX4546297.10_peaks.narrowPeak INFO @ Tue, 04 Sep 2018 11:06:30: #4 Write summits bed file... SRX4546297.10_summits.bed INFO @ Tue, 04 Sep 2018 11:06:30: Done! pass1 - making usageList (15 chroms): 4 millis pass2 - checking and writing primary data (14569 records, 4 fields): 18 millis CompletedMACS2peakCalling INFO @ Tue, 04 Sep 2018 11:06:36: #4 Write output xls file... SRX4546297.05_peaks.xls INFO @ Tue, 04 Sep 2018 11:06:36: #4 Write peak in narrowPeak format file... SRX4546297.05_peaks.narrowPeak INFO @ Tue, 04 Sep 2018 11:06:36: #4 Write output xls file... SRX4546297.20_peaks.xls INFO @ Tue, 04 Sep 2018 11:06:37: #4 Write summits bed file... SRX4546297.05_summits.bed INFO @ Tue, 04 Sep 2018 11:06:37: #4 Write peak in narrowPeak format file... SRX4546297.20_peaks.narrowPeak INFO @ Tue, 04 Sep 2018 11:06:37: #4 Write summits bed file... SRX4546297.20_summits.bed INFO @ Tue, 04 Sep 2018 11:06:37: Done! INFO @ Tue, 04 Sep 2018 11:06:37: Done! pass1 - making usageList (13 chroms): 3 millis pass2 - checking and writing primary data (7175 records, 4 fields): 9 millis CompletedMACS2peakCalling pass1 - making usageList (15 chroms): 4 millis pass2 - checking and writing primary data (20896 records, 4 fields): 25 millis CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。