Job ID = 12265234 SRX = SRX4518004 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 38287814 spots for SRR7655608/SRR7655608.sra Written 38287814 spots for SRR7655608/SRR7655608.sra fastq に変換しました。 bowtie でマッピング中... Your job 12265532 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:30:58 38287814 reads; of these: 38287814 (100.00%) were paired; of these: 7165552 (18.71%) aligned concordantly 0 times 29703616 (77.58%) aligned concordantly exactly 1 time 1418646 (3.71%) aligned concordantly >1 times ---- 7165552 pairs aligned concordantly 0 times; of these: 3492408 (48.74%) aligned discordantly 1 time ---- 3673144 pairs aligned 0 times concordantly or discordantly; of these: 7346288 mates make up the pairs; of these: 5949397 (80.99%) aligned 0 times 995644 (13.55%) aligned exactly 1 time 401247 (5.46%) aligned >1 times 92.23% overall alignment rate Time searching: 00:30:58 Overall time: 00:30:58 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 32 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 3381220 / 33982954 = 0.0995 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 07:20:40: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX4518004/SRX4518004.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX4518004/SRX4518004.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX4518004/SRX4518004.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX4518004/SRX4518004.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 07:20:40: #1 read tag files... INFO @ Sat, 03 Apr 2021 07:20:40: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 07:20:47: 1000000 INFO @ Sat, 03 Apr 2021 07:20:54: 2000000 INFO @ Sat, 03 Apr 2021 07:21:00: 3000000 INFO @ Sat, 03 Apr 2021 07:21:07: 4000000 WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 07:21:10: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX4518004/SRX4518004.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX4518004/SRX4518004.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX4518004/SRX4518004.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX4518004/SRX4518004.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 07:21:10: #1 read tag files... INFO @ Sat, 03 Apr 2021 07:21:10: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 07:21:14: 5000000 INFO @ Sat, 03 Apr 2021 07:21:19: 1000000 INFO @ Sat, 03 Apr 2021 07:21:20: 6000000 INFO @ Sat, 03 Apr 2021 07:21:26: 2000000 INFO @ Sat, 03 Apr 2021 07:21:27: 7000000 INFO @ Sat, 03 Apr 2021 07:21:33: 3000000 INFO @ Sat, 03 Apr 2021 07:21:34: 8000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 07:21:39: 4000000 INFO @ Sat, 03 Apr 2021 07:21:40: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX4518004/SRX4518004.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX4518004/SRX4518004.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX4518004/SRX4518004.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX4518004/SRX4518004.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 07:21:40: #1 read tag files... INFO @ Sat, 03 Apr 2021 07:21:40: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 07:21:40: 9000000 INFO @ Sat, 03 Apr 2021 07:21:46: 5000000 INFO @ Sat, 03 Apr 2021 07:21:47: 10000000 INFO @ Sat, 03 Apr 2021 07:21:48: 1000000 INFO @ Sat, 03 Apr 2021 07:21:53: 6000000 INFO @ Sat, 03 Apr 2021 07:21:54: 11000000 INFO @ Sat, 03 Apr 2021 07:21:56: 2000000 INFO @ Sat, 03 Apr 2021 07:22:01: 7000000 INFO @ Sat, 03 Apr 2021 07:22:01: 12000000 INFO @ Sat, 03 Apr 2021 07:22:04: 3000000 INFO @ Sat, 03 Apr 2021 07:22:08: 13000000 INFO @ Sat, 03 Apr 2021 07:22:10: 8000000 INFO @ Sat, 03 Apr 2021 07:22:13: 4000000 INFO @ Sat, 03 Apr 2021 07:22:15: 14000000 INFO @ Sat, 03 Apr 2021 07:22:17: 9000000 INFO @ Sat, 03 Apr 2021 07:22:22: 15000000 INFO @ Sat, 03 Apr 2021 07:22:23: 5000000 INFO @ Sat, 03 Apr 2021 07:22:24: 10000000 INFO @ Sat, 03 Apr 2021 07:22:29: 16000000 INFO @ Sat, 03 Apr 2021 07:22:31: 11000000 INFO @ Sat, 03 Apr 2021 07:22:33: 6000000 INFO @ Sat, 03 Apr 2021 07:22:36: 17000000 INFO @ Sat, 03 Apr 2021 07:22:38: 12000000 INFO @ Sat, 03 Apr 2021 07:22:44: 7000000 INFO @ Sat, 03 Apr 2021 07:22:45: 18000000 INFO @ Sat, 03 Apr 2021 07:22:47: 13000000 INFO @ Sat, 03 Apr 2021 07:22:52: 19000000 INFO @ Sat, 03 Apr 2021 07:22:55: 8000000 INFO @ Sat, 03 Apr 2021 07:22:55: 14000000 INFO @ Sat, 03 Apr 2021 07:22:59: 20000000 INFO @ Sat, 03 Apr 2021 07:23:02: 15000000 INFO @ Sat, 03 Apr 2021 07:23:05: 9000000 INFO @ Sat, 03 Apr 2021 07:23:06: 21000000 INFO @ Sat, 03 Apr 2021 07:23:08: 16000000 INFO @ Sat, 03 Apr 2021 07:23:13: 22000000 INFO @ Sat, 03 Apr 2021 07:23:14: 10000000 INFO @ Sat, 03 Apr 2021 07:23:15: 17000000 INFO @ Sat, 03 Apr 2021 07:23:20: 23000000 INFO @ Sat, 03 Apr 2021 07:23:22: 18000000 INFO @ Sat, 03 Apr 2021 07:23:24: 11000000 INFO @ Sat, 03 Apr 2021 07:23:26: 24000000 INFO @ Sat, 03 Apr 2021 07:23:29: 19000000 INFO @ Sat, 03 Apr 2021 07:23:34: 25000000 INFO @ Sat, 03 Apr 2021 07:23:34: 12000000 INFO @ Sat, 03 Apr 2021 07:23:36: 20000000 INFO @ Sat, 03 Apr 2021 07:23:41: 26000000 INFO @ Sat, 03 Apr 2021 07:23:43: 21000000 INFO @ Sat, 03 Apr 2021 07:23:44: 13000000 INFO @ Sat, 03 Apr 2021 07:23:48: 27000000 INFO @ Sat, 03 Apr 2021 07:23:50: 22000000 INFO @ Sat, 03 Apr 2021 07:23:54: 14000000 INFO @ Sat, 03 Apr 2021 07:23:55: 28000000 INFO @ Sat, 03 Apr 2021 07:23:57: 23000000 INFO @ Sat, 03 Apr 2021 07:24:02: 29000000 INFO @ Sat, 03 Apr 2021 07:24:04: 15000000 INFO @ Sat, 03 Apr 2021 07:24:04: 24000000 INFO @ Sat, 03 Apr 2021 07:24:09: 30000000 INFO @ Sat, 03 Apr 2021 07:24:11: 25000000 INFO @ Sat, 03 Apr 2021 07:24:14: 16000000 INFO @ Sat, 03 Apr 2021 07:24:16: 31000000 INFO @ Sat, 03 Apr 2021 07:24:18: 26000000 INFO @ Sat, 03 Apr 2021 07:24:23: 32000000 INFO @ Sat, 03 Apr 2021 07:24:25: 17000000 INFO @ Sat, 03 Apr 2021 07:24:25: 27000000 INFO @ Sat, 03 Apr 2021 07:24:30: 33000000 INFO @ Sat, 03 Apr 2021 07:24:32: 28000000 INFO @ Sat, 03 Apr 2021 07:24:35: 18000000 INFO @ Sat, 03 Apr 2021 07:24:37: 34000000 INFO @ Sat, 03 Apr 2021 07:24:39: 29000000 INFO @ Sat, 03 Apr 2021 07:24:44: 35000000 INFO @ Sat, 03 Apr 2021 07:24:45: 19000000 INFO @ Sat, 03 Apr 2021 07:24:46: 30000000 INFO @ Sat, 03 Apr 2021 07:24:51: 36000000 INFO @ Sat, 03 Apr 2021 07:24:53: 20000000 INFO @ Sat, 03 Apr 2021 07:24:53: 31000000 INFO @ Sat, 03 Apr 2021 07:24:57: 37000000 INFO @ Sat, 03 Apr 2021 07:25:00: 32000000 INFO @ Sat, 03 Apr 2021 07:25:03: 21000000 INFO @ Sat, 03 Apr 2021 07:25:04: 38000000 INFO @ Sat, 03 Apr 2021 07:25:07: 33000000 INFO @ Sat, 03 Apr 2021 07:25:11: 39000000 INFO @ Sat, 03 Apr 2021 07:25:13: 22000000 INFO @ Sat, 03 Apr 2021 07:25:14: 34000000 INFO @ Sat, 03 Apr 2021 07:25:18: 40000000 INFO @ Sat, 03 Apr 2021 07:25:20: 35000000 INFO @ Sat, 03 Apr 2021 07:25:23: 23000000 INFO @ Sat, 03 Apr 2021 07:25:25: 41000000 INFO @ Sat, 03 Apr 2021 07:25:27: 36000000 INFO @ Sat, 03 Apr 2021 07:25:32: 42000000 INFO @ Sat, 03 Apr 2021 07:25:33: 24000000 INFO @ Sat, 03 Apr 2021 07:25:34: 37000000 INFO @ Sat, 03 Apr 2021 07:25:39: 43000000 INFO @ Sat, 03 Apr 2021 07:25:41: 38000000 INFO @ Sat, 03 Apr 2021 07:25:43: 25000000 INFO @ Sat, 03 Apr 2021 07:25:46: 44000000 INFO @ Sat, 03 Apr 2021 07:25:47: 39000000 INFO @ Sat, 03 Apr 2021 07:25:52: 45000000 INFO @ Sat, 03 Apr 2021 07:25:53: 26000000 INFO @ Sat, 03 Apr 2021 07:25:54: 40000000 INFO @ Sat, 03 Apr 2021 07:25:59: 46000000 INFO @ Sat, 03 Apr 2021 07:26:01: 41000000 INFO @ Sat, 03 Apr 2021 07:26:03: 27000000 INFO @ Sat, 03 Apr 2021 07:26:06: 47000000 INFO @ Sat, 03 Apr 2021 07:26:08: 42000000 INFO @ Sat, 03 Apr 2021 07:26:13: 28000000 INFO @ Sat, 03 Apr 2021 07:26:13: 48000000 INFO @ Sat, 03 Apr 2021 07:26:15: 43000000 INFO @ Sat, 03 Apr 2021 07:26:20: 49000000 INFO @ Sat, 03 Apr 2021 07:26:22: 44000000 INFO @ Sat, 03 Apr 2021 07:26:22: 29000000 INFO @ Sat, 03 Apr 2021 07:26:26: 50000000 INFO @ Sat, 03 Apr 2021 07:26:28: 45000000 INFO @ Sat, 03 Apr 2021 07:26:32: 30000000 INFO @ Sat, 03 Apr 2021 07:26:33: 51000000 INFO @ Sat, 03 Apr 2021 07:26:35: 46000000 INFO @ Sat, 03 Apr 2021 07:26:40: 52000000 INFO @ Sat, 03 Apr 2021 07:26:42: 31000000 INFO @ Sat, 03 Apr 2021 07:26:42: 47000000 INFO @ Sat, 03 Apr 2021 07:26:47: 53000000 INFO @ Sat, 03 Apr 2021 07:26:49: 48000000 INFO @ Sat, 03 Apr 2021 07:26:51: 32000000 INFO @ Sat, 03 Apr 2021 07:26:54: 54000000 INFO @ Sat, 03 Apr 2021 07:26:56: 49000000 INFO @ Sat, 03 Apr 2021 07:27:00: 33000000 INFO @ Sat, 03 Apr 2021 07:27:00: 55000000 INFO @ Sat, 03 Apr 2021 07:27:02: 50000000 INFO @ Sat, 03 Apr 2021 07:27:07: 56000000 INFO @ Sat, 03 Apr 2021 07:27:09: 51000000 INFO @ Sat, 03 Apr 2021 07:27:09: 34000000 INFO @ Sat, 03 Apr 2021 07:27:14: 57000000 INFO @ Sat, 03 Apr 2021 07:27:15: 52000000 INFO @ Sat, 03 Apr 2021 07:27:19: 35000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Sat, 03 Apr 2021 07:27:21: 58000000 INFO @ Sat, 03 Apr 2021 07:27:22: 53000000 INFO @ Sat, 03 Apr 2021 07:27:28: 59000000 INFO @ Sat, 03 Apr 2021 07:27:29: 54000000 INFO @ Sat, 03 Apr 2021 07:27:29: 36000000 INFO @ Sat, 03 Apr 2021 07:27:35: 60000000 INFO @ Sat, 03 Apr 2021 07:27:36: 55000000 INFO @ Sat, 03 Apr 2021 07:27:39: 37000000 INFO @ Sat, 03 Apr 2021 07:27:42: 61000000 INFO @ Sat, 03 Apr 2021 07:27:42: 56000000 INFO @ Sat, 03 Apr 2021 07:27:49: 62000000 INFO @ Sat, 03 Apr 2021 07:27:49: 38000000 INFO @ Sat, 03 Apr 2021 07:27:49: 57000000 INFO @ Sat, 03 Apr 2021 07:27:55: 63000000 INFO @ Sat, 03 Apr 2021 07:27:56: 58000000 INFO @ Sat, 03 Apr 2021 07:27:59: 39000000 INFO @ Sat, 03 Apr 2021 07:28:02: #1 tag size is determined as 50 bps INFO @ Sat, 03 Apr 2021 07:28:02: #1 tag size = 50 INFO @ Sat, 03 Apr 2021 07:28:02: #1 total tags in treatment: 28333261 INFO @ Sat, 03 Apr 2021 07:28:02: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 07:28:02: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 07:28:03: #1 tags after filtering in treatment: 18549561 INFO @ Sat, 03 Apr 2021 07:28:03: #1 Redundant rate of treatment: 0.35 INFO @ Sat, 03 Apr 2021 07:28:03: #1 finished! INFO @ Sat, 03 Apr 2021 07:28:03: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 07:28:03: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 07:28:03: 59000000 INFO @ Sat, 03 Apr 2021 07:28:04: #2 number of paired peaks: 638 WARNING @ Sat, 03 Apr 2021 07:28:04: Fewer paired peaks (638) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 638 pairs to build model! INFO @ Sat, 03 Apr 2021 07:28:04: start model_add_line... INFO @ Sat, 03 Apr 2021 07:28:04: start X-correlation... INFO @ Sat, 03 Apr 2021 07:28:04: end of X-cor INFO @ Sat, 03 Apr 2021 07:28:04: #2 finished! INFO @ Sat, 03 Apr 2021 07:28:04: #2 predicted fragment length is 53 bps INFO @ Sat, 03 Apr 2021 07:28:04: #2 alternative fragment length(s) may be 53,551 bps INFO @ Sat, 03 Apr 2021 07:28:04: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX4518004/SRX4518004.05_model.r WARNING @ Sat, 03 Apr 2021 07:28:04: #2 Since the d (53) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 07:28:04: #2 You may need to consider one of the other alternative d(s): 53,551 WARNING @ Sat, 03 Apr 2021 07:28:04: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 07:28:04: #3 Call peaks... INFO @ Sat, 03 Apr 2021 07:28:04: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 07:28:09: 40000000 INFO @ Sat, 03 Apr 2021 07:28:10: 60000000 INFO @ Sat, 03 Apr 2021 07:28:16: 61000000 INFO @ Sat, 03 Apr 2021 07:28:19: 41000000 INFO @ Sat, 03 Apr 2021 07:28:23: 62000000 INFO @ Sat, 03 Apr 2021 07:28:28: 42000000 INFO @ Sat, 03 Apr 2021 07:28:30: 63000000 INFO @ Sat, 03 Apr 2021 07:28:36: #1 tag size is determined as 50 bps INFO @ Sat, 03 Apr 2021 07:28:36: #1 tag size = 50 INFO @ Sat, 03 Apr 2021 07:28:36: #1 total tags in treatment: 28333261 INFO @ Sat, 03 Apr 2021 07:28:36: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 07:28:36: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 07:28:36: #1 tags after filtering in treatment: 18549561 INFO @ Sat, 03 Apr 2021 07:28:36: #1 Redundant rate of treatment: 0.35 INFO @ Sat, 03 Apr 2021 07:28:36: #1 finished! INFO @ Sat, 03 Apr 2021 07:28:36: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 07:28:36: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 07:28:38: 43000000 INFO @ Sat, 03 Apr 2021 07:28:38: #2 number of paired peaks: 638 WARNING @ Sat, 03 Apr 2021 07:28:38: Fewer paired peaks (638) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 638 pairs to build model! INFO @ Sat, 03 Apr 2021 07:28:38: start model_add_line... INFO @ Sat, 03 Apr 2021 07:28:38: start X-correlation... INFO @ Sat, 03 Apr 2021 07:28:38: end of X-cor INFO @ Sat, 03 Apr 2021 07:28:38: #2 finished! INFO @ Sat, 03 Apr 2021 07:28:38: #2 predicted fragment length is 53 bps INFO @ Sat, 03 Apr 2021 07:28:38: #2 alternative fragment length(s) may be 53,551 bps INFO @ Sat, 03 Apr 2021 07:28:38: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX4518004/SRX4518004.10_model.r WARNING @ Sat, 03 Apr 2021 07:28:38: #2 Since the d (53) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 07:28:38: #2 You may need to consider one of the other alternative d(s): 53,551 WARNING @ Sat, 03 Apr 2021 07:28:38: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 07:28:38: #3 Call peaks... INFO @ Sat, 03 Apr 2021 07:28:38: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 07:28:47: 44000000 INFO @ Sat, 03 Apr 2021 07:28:54: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 07:28:56: 45000000 BigWig に変換しました。 INFO @ Sat, 03 Apr 2021 07:29:05: 46000000 INFO @ Sat, 03 Apr 2021 07:29:15: 47000000 INFO @ Sat, 03 Apr 2021 07:29:21: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX4518004/SRX4518004.05_peaks.xls INFO @ Sat, 03 Apr 2021 07:29:21: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX4518004/SRX4518004.05_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 07:29:21: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX4518004/SRX4518004.05_summits.bed INFO @ Sat, 03 Apr 2021 07:29:21: Done! pass1 - making usageList (14 chroms): 6 millis pass2 - checking and writing primary data (13022 records, 4 fields): 19 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 07:29:23: 48000000 INFO @ Sat, 03 Apr 2021 07:29:27: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 07:29:32: 49000000 INFO @ Sat, 03 Apr 2021 07:29:42: 50000000 INFO @ Sat, 03 Apr 2021 07:29:50: 51000000 INFO @ Sat, 03 Apr 2021 07:29:54: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX4518004/SRX4518004.10_peaks.xls INFO @ Sat, 03 Apr 2021 07:29:54: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX4518004/SRX4518004.10_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 07:29:54: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX4518004/SRX4518004.10_summits.bed INFO @ Sat, 03 Apr 2021 07:29:54: Done! pass1 - making usageList (13 chroms): 3 millis pass2 - checking and writing primary data (5331 records, 4 fields): 13 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 07:29:59: 52000000 INFO @ Sat, 03 Apr 2021 07:30:08: 53000000 INFO @ Sat, 03 Apr 2021 07:30:17: 54000000 INFO @ Sat, 03 Apr 2021 07:30:26: 55000000 INFO @ Sat, 03 Apr 2021 07:30:35: 56000000 INFO @ Sat, 03 Apr 2021 07:30:45: 57000000 INFO @ Sat, 03 Apr 2021 07:30:55: 58000000 INFO @ Sat, 03 Apr 2021 07:31:05: 59000000 INFO @ Sat, 03 Apr 2021 07:31:14: 60000000 INFO @ Sat, 03 Apr 2021 07:31:23: 61000000 INFO @ Sat, 03 Apr 2021 07:31:32: 62000000 INFO @ Sat, 03 Apr 2021 07:31:41: 63000000 INFO @ Sat, 03 Apr 2021 07:31:50: #1 tag size is determined as 50 bps INFO @ Sat, 03 Apr 2021 07:31:50: #1 tag size = 50 INFO @ Sat, 03 Apr 2021 07:31:50: #1 total tags in treatment: 28333261 INFO @ Sat, 03 Apr 2021 07:31:50: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 07:31:50: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 07:31:50: #1 tags after filtering in treatment: 18549561 INFO @ Sat, 03 Apr 2021 07:31:50: #1 Redundant rate of treatment: 0.35 INFO @ Sat, 03 Apr 2021 07:31:50: #1 finished! INFO @ Sat, 03 Apr 2021 07:31:50: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 07:31:50: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 07:31:52: #2 number of paired peaks: 638 WARNING @ Sat, 03 Apr 2021 07:31:52: Fewer paired peaks (638) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 638 pairs to build model! INFO @ Sat, 03 Apr 2021 07:31:52: start model_add_line... INFO @ Sat, 03 Apr 2021 07:31:52: start X-correlation... INFO @ Sat, 03 Apr 2021 07:31:52: end of X-cor INFO @ Sat, 03 Apr 2021 07:31:52: #2 finished! INFO @ Sat, 03 Apr 2021 07:31:52: #2 predicted fragment length is 53 bps INFO @ Sat, 03 Apr 2021 07:31:52: #2 alternative fragment length(s) may be 53,551 bps INFO @ Sat, 03 Apr 2021 07:31:52: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX4518004/SRX4518004.20_model.r WARNING @ Sat, 03 Apr 2021 07:31:52: #2 Since the d (53) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 07:31:52: #2 You may need to consider one of the other alternative d(s): 53,551 WARNING @ Sat, 03 Apr 2021 07:31:52: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 07:31:52: #3 Call peaks... INFO @ Sat, 03 Apr 2021 07:31:52: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 07:32:44: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 07:33:13: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX4518004/SRX4518004.20_peaks.xls INFO @ Sat, 03 Apr 2021 07:33:13: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX4518004/SRX4518004.20_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 07:33:13: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX4518004/SRX4518004.20_summits.bed INFO @ Sat, 03 Apr 2021 07:33:13: Done! pass1 - making usageList (11 chroms): 1 millis pass2 - checking and writing primary data (595 records, 4 fields): 5 millis CompletedMACS2peakCalling