Job ID = 12265221 SRX = SRX4517993 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 51689803 spots for SRR7655597/SRR7655597.sra Written 51689803 spots for SRR7655597/SRR7655597.sra fastq に変換しました。 bowtie でマッピング中... Your job 12265534 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:31:43 51689803 reads; of these: 51689803 (100.00%) were paired; of these: 6942451 (13.43%) aligned concordantly 0 times 42639599 (82.49%) aligned concordantly exactly 1 time 2107753 (4.08%) aligned concordantly >1 times ---- 6942451 pairs aligned concordantly 0 times; of these: 3574172 (51.48%) aligned discordantly 1 time ---- 3368279 pairs aligned 0 times concordantly or discordantly; of these: 6736558 mates make up the pairs; of these: 5297743 (78.64%) aligned 0 times 1020951 (15.16%) aligned exactly 1 time 417864 (6.20%) aligned >1 times 94.88% overall alignment rate Time searching: 00:31:43 Overall time: 00:31:43 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 40 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 5454943 / 47605656 = 0.1146 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 07:22:05: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX4517993/SRX4517993.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX4517993/SRX4517993.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX4517993/SRX4517993.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX4517993/SRX4517993.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 07:22:05: #1 read tag files... INFO @ Sat, 03 Apr 2021 07:22:05: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 07:22:12: 1000000 INFO @ Sat, 03 Apr 2021 07:22:20: 2000000 INFO @ Sat, 03 Apr 2021 07:22:27: 3000000 WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 07:22:34: 4000000 INFO @ Sat, 03 Apr 2021 07:22:35: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX4517993/SRX4517993.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX4517993/SRX4517993.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX4517993/SRX4517993.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX4517993/SRX4517993.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 07:22:35: #1 read tag files... INFO @ Sat, 03 Apr 2021 07:22:35: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 07:22:42: 5000000 INFO @ Sat, 03 Apr 2021 07:22:43: 1000000 INFO @ Sat, 03 Apr 2021 07:22:50: 6000000 INFO @ Sat, 03 Apr 2021 07:22:51: 2000000 INFO @ Sat, 03 Apr 2021 07:22:59: 7000000 INFO @ Sat, 03 Apr 2021 07:23:00: 3000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 07:23:05: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX4517993/SRX4517993.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX4517993/SRX4517993.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX4517993/SRX4517993.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX4517993/SRX4517993.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 07:23:05: #1 read tag files... INFO @ Sat, 03 Apr 2021 07:23:05: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 07:23:07: 8000000 INFO @ Sat, 03 Apr 2021 07:23:08: 4000000 INFO @ Sat, 03 Apr 2021 07:23:13: 1000000 INFO @ Sat, 03 Apr 2021 07:23:15: 9000000 INFO @ Sat, 03 Apr 2021 07:23:16: 5000000 INFO @ Sat, 03 Apr 2021 07:23:22: 2000000 INFO @ Sat, 03 Apr 2021 07:23:23: 10000000 INFO @ Sat, 03 Apr 2021 07:23:25: 6000000 INFO @ Sat, 03 Apr 2021 07:23:30: 3000000 INFO @ Sat, 03 Apr 2021 07:23:32: 11000000 INFO @ Sat, 03 Apr 2021 07:23:33: 7000000 INFO @ Sat, 03 Apr 2021 07:23:38: 4000000 INFO @ Sat, 03 Apr 2021 07:23:40: 12000000 INFO @ Sat, 03 Apr 2021 07:23:41: 8000000 INFO @ Sat, 03 Apr 2021 07:23:47: 5000000 INFO @ Sat, 03 Apr 2021 07:23:48: 13000000 INFO @ Sat, 03 Apr 2021 07:23:50: 9000000 INFO @ Sat, 03 Apr 2021 07:23:55: 6000000 INFO @ Sat, 03 Apr 2021 07:23:57: 14000000 INFO @ Sat, 03 Apr 2021 07:23:58: 10000000 INFO @ Sat, 03 Apr 2021 07:24:03: 7000000 INFO @ Sat, 03 Apr 2021 07:24:05: 15000000 INFO @ Sat, 03 Apr 2021 07:24:06: 11000000 INFO @ Sat, 03 Apr 2021 07:24:12: 8000000 INFO @ Sat, 03 Apr 2021 07:24:13: 16000000 INFO @ Sat, 03 Apr 2021 07:24:15: 12000000 INFO @ Sat, 03 Apr 2021 07:24:20: 9000000 INFO @ Sat, 03 Apr 2021 07:24:22: 17000000 INFO @ Sat, 03 Apr 2021 07:24:23: 13000000 INFO @ Sat, 03 Apr 2021 07:24:28: 10000000 INFO @ Sat, 03 Apr 2021 07:24:30: 18000000 INFO @ Sat, 03 Apr 2021 07:24:31: 14000000 INFO @ Sat, 03 Apr 2021 07:24:37: 11000000 INFO @ Sat, 03 Apr 2021 07:24:38: 19000000 INFO @ Sat, 03 Apr 2021 07:24:40: 15000000 INFO @ Sat, 03 Apr 2021 07:24:45: 12000000 INFO @ Sat, 03 Apr 2021 07:24:47: 20000000 INFO @ Sat, 03 Apr 2021 07:24:48: 16000000 INFO @ Sat, 03 Apr 2021 07:24:54: 13000000 INFO @ Sat, 03 Apr 2021 07:24:55: 21000000 INFO @ Sat, 03 Apr 2021 07:24:57: 17000000 INFO @ Sat, 03 Apr 2021 07:25:02: 14000000 INFO @ Sat, 03 Apr 2021 07:25:04: 22000000 INFO @ Sat, 03 Apr 2021 07:25:05: 18000000 INFO @ Sat, 03 Apr 2021 07:25:10: 15000000 INFO @ Sat, 03 Apr 2021 07:25:12: 23000000 INFO @ Sat, 03 Apr 2021 07:25:14: 19000000 INFO @ Sat, 03 Apr 2021 07:25:19: 16000000 INFO @ Sat, 03 Apr 2021 07:25:20: 24000000 INFO @ Sat, 03 Apr 2021 07:25:22: 20000000 INFO @ Sat, 03 Apr 2021 07:25:27: 17000000 INFO @ Sat, 03 Apr 2021 07:25:28: 25000000 INFO @ Sat, 03 Apr 2021 07:25:30: 21000000 INFO @ Sat, 03 Apr 2021 07:25:35: 18000000 INFO @ Sat, 03 Apr 2021 07:25:37: 26000000 INFO @ Sat, 03 Apr 2021 07:25:39: 22000000 INFO @ Sat, 03 Apr 2021 07:25:44: 19000000 INFO @ Sat, 03 Apr 2021 07:25:45: 27000000 INFO @ Sat, 03 Apr 2021 07:25:47: 23000000 INFO @ Sat, 03 Apr 2021 07:25:52: 20000000 INFO @ Sat, 03 Apr 2021 07:25:53: 28000000 INFO @ Sat, 03 Apr 2021 07:25:55: 24000000 INFO @ Sat, 03 Apr 2021 07:26:00: 21000000 INFO @ Sat, 03 Apr 2021 07:26:02: 29000000 INFO @ Sat, 03 Apr 2021 07:26:04: 25000000 INFO @ Sat, 03 Apr 2021 07:26:09: 22000000 INFO @ Sat, 03 Apr 2021 07:26:10: 30000000 INFO @ Sat, 03 Apr 2021 07:26:12: 26000000 INFO @ Sat, 03 Apr 2021 07:26:17: 23000000 INFO @ Sat, 03 Apr 2021 07:26:18: 31000000 INFO @ Sat, 03 Apr 2021 07:26:20: 27000000 INFO @ Sat, 03 Apr 2021 07:26:26: 24000000 INFO @ Sat, 03 Apr 2021 07:26:27: 32000000 INFO @ Sat, 03 Apr 2021 07:26:29: 28000000 INFO @ Sat, 03 Apr 2021 07:26:34: 25000000 INFO @ Sat, 03 Apr 2021 07:26:35: 33000000 INFO @ Sat, 03 Apr 2021 07:26:37: 29000000 INFO @ Sat, 03 Apr 2021 07:26:42: 26000000 INFO @ Sat, 03 Apr 2021 07:26:43: 34000000 INFO @ Sat, 03 Apr 2021 07:26:45: 30000000 INFO @ Sat, 03 Apr 2021 07:26:50: 27000000 INFO @ Sat, 03 Apr 2021 07:26:52: 35000000 INFO @ Sat, 03 Apr 2021 07:26:54: 31000000 INFO @ Sat, 03 Apr 2021 07:26:58: 28000000 INFO @ Sat, 03 Apr 2021 07:27:00: 36000000 INFO @ Sat, 03 Apr 2021 07:27:02: 32000000 INFO @ Sat, 03 Apr 2021 07:27:07: 29000000 INFO @ Sat, 03 Apr 2021 07:27:08: 37000000 INFO @ Sat, 03 Apr 2021 07:27:10: 33000000 INFO @ Sat, 03 Apr 2021 07:27:15: 30000000 INFO @ Sat, 03 Apr 2021 07:27:16: 38000000 INFO @ Sat, 03 Apr 2021 07:27:18: 34000000 INFO @ Sat, 03 Apr 2021 07:27:23: 31000000 INFO @ Sat, 03 Apr 2021 07:27:24: 39000000 INFO @ Sat, 03 Apr 2021 07:27:27: 35000000 INFO @ Sat, 03 Apr 2021 07:27:31: 32000000 INFO @ Sat, 03 Apr 2021 07:27:32: 40000000 INFO @ Sat, 03 Apr 2021 07:27:35: 36000000 INFO @ Sat, 03 Apr 2021 07:27:40: 33000000 INFO @ Sat, 03 Apr 2021 07:27:40: 41000000 INFO @ Sat, 03 Apr 2021 07:27:43: 37000000 INFO @ Sat, 03 Apr 2021 07:27:48: 34000000 INFO @ Sat, 03 Apr 2021 07:27:48: 42000000 INFO @ Sat, 03 Apr 2021 07:27:51: 38000000 INFO @ Sat, 03 Apr 2021 07:27:56: 35000000 INFO @ Sat, 03 Apr 2021 07:27:57: 43000000 INFO @ Sat, 03 Apr 2021 07:27:59: 39000000 INFO @ Sat, 03 Apr 2021 07:28:04: 36000000 INFO @ Sat, 03 Apr 2021 07:28:05: 44000000 INFO @ Sat, 03 Apr 2021 07:28:07: 40000000 INFO @ Sat, 03 Apr 2021 07:28:12: 37000000 INFO @ Sat, 03 Apr 2021 07:28:13: 45000000 INFO @ Sat, 03 Apr 2021 07:28:15: 41000000 INFO @ Sat, 03 Apr 2021 07:28:21: 38000000 INFO @ Sat, 03 Apr 2021 07:28:21: 46000000 INFO @ Sat, 03 Apr 2021 07:28:24: 42000000 INFO @ Sat, 03 Apr 2021 07:28:29: 39000000 INFO @ Sat, 03 Apr 2021 07:28:29: 47000000 INFO @ Sat, 03 Apr 2021 07:28:32: 43000000 INFO @ Sat, 03 Apr 2021 07:28:37: 40000000 INFO @ Sat, 03 Apr 2021 07:28:37: 48000000 INFO @ Sat, 03 Apr 2021 07:28:40: 44000000 INFO @ Sat, 03 Apr 2021 07:28:45: 41000000 INFO @ Sat, 03 Apr 2021 07:28:45: 49000000 INFO @ Sat, 03 Apr 2021 07:28:48: 45000000 INFO @ Sat, 03 Apr 2021 07:28:53: 42000000 INFO @ Sat, 03 Apr 2021 07:28:53: 50000000 INFO @ Sat, 03 Apr 2021 07:28:56: 46000000 INFO @ Sat, 03 Apr 2021 07:29:01: 43000000 INFO @ Sat, 03 Apr 2021 07:29:01: 51000000 INFO @ Sat, 03 Apr 2021 07:29:04: 47000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Sat, 03 Apr 2021 07:29:09: 44000000 INFO @ Sat, 03 Apr 2021 07:29:10: 52000000 INFO @ Sat, 03 Apr 2021 07:29:12: 48000000 INFO @ Sat, 03 Apr 2021 07:29:17: 45000000 INFO @ Sat, 03 Apr 2021 07:29:18: 53000000 INFO @ Sat, 03 Apr 2021 07:29:20: 49000000 INFO @ Sat, 03 Apr 2021 07:29:25: 46000000 INFO @ Sat, 03 Apr 2021 07:29:26: 54000000 INFO @ Sat, 03 Apr 2021 07:29:28: 50000000 INFO @ Sat, 03 Apr 2021 07:29:33: 47000000 INFO @ Sat, 03 Apr 2021 07:29:35: 55000000 INFO @ Sat, 03 Apr 2021 07:29:36: 51000000 INFO @ Sat, 03 Apr 2021 07:29:41: 48000000 INFO @ Sat, 03 Apr 2021 07:29:43: 56000000 INFO @ Sat, 03 Apr 2021 07:29:45: 52000000 INFO @ Sat, 03 Apr 2021 07:29:49: 49000000 INFO @ Sat, 03 Apr 2021 07:29:51: 57000000 INFO @ Sat, 03 Apr 2021 07:29:53: 53000000 INFO @ Sat, 03 Apr 2021 07:29:58: 50000000 INFO @ Sat, 03 Apr 2021 07:30:00: 58000000 INFO @ Sat, 03 Apr 2021 07:30:01: 54000000 INFO @ Sat, 03 Apr 2021 07:30:06: 51000000 INFO @ Sat, 03 Apr 2021 07:30:08: 59000000 INFO @ Sat, 03 Apr 2021 07:30:10: 55000000 INFO @ Sat, 03 Apr 2021 07:30:14: 52000000 INFO @ Sat, 03 Apr 2021 07:30:17: 60000000 INFO @ Sat, 03 Apr 2021 07:30:18: 56000000 INFO @ Sat, 03 Apr 2021 07:30:22: 53000000 INFO @ Sat, 03 Apr 2021 07:30:25: 61000000 INFO @ Sat, 03 Apr 2021 07:30:27: 57000000 INFO @ Sat, 03 Apr 2021 07:30:31: 54000000 INFO @ Sat, 03 Apr 2021 07:30:33: 62000000 INFO @ Sat, 03 Apr 2021 07:30:35: 58000000 BigWig に変換しました。 INFO @ Sat, 03 Apr 2021 07:30:39: 55000000 INFO @ Sat, 03 Apr 2021 07:30:42: 63000000 INFO @ Sat, 03 Apr 2021 07:30:43: 59000000 INFO @ Sat, 03 Apr 2021 07:30:47: 56000000 INFO @ Sat, 03 Apr 2021 07:30:50: 64000000 INFO @ Sat, 03 Apr 2021 07:30:51: 60000000 INFO @ Sat, 03 Apr 2021 07:30:56: 57000000 INFO @ Sat, 03 Apr 2021 07:30:58: 65000000 INFO @ Sat, 03 Apr 2021 07:31:00: 61000000 INFO @ Sat, 03 Apr 2021 07:31:04: 58000000 INFO @ Sat, 03 Apr 2021 07:31:07: 66000000 INFO @ Sat, 03 Apr 2021 07:31:08: 62000000 INFO @ Sat, 03 Apr 2021 07:31:12: 59000000 INFO @ Sat, 03 Apr 2021 07:31:15: 67000000 INFO @ Sat, 03 Apr 2021 07:31:16: 63000000 INFO @ Sat, 03 Apr 2021 07:31:20: 60000000 INFO @ Sat, 03 Apr 2021 07:31:23: 68000000 INFO @ Sat, 03 Apr 2021 07:31:25: 64000000 INFO @ Sat, 03 Apr 2021 07:31:29: 61000000 INFO @ Sat, 03 Apr 2021 07:31:31: 69000000 INFO @ Sat, 03 Apr 2021 07:31:33: 65000000 INFO @ Sat, 03 Apr 2021 07:31:37: 62000000 INFO @ Sat, 03 Apr 2021 07:31:40: 70000000 INFO @ Sat, 03 Apr 2021 07:31:41: 66000000 INFO @ Sat, 03 Apr 2021 07:31:45: 63000000 INFO @ Sat, 03 Apr 2021 07:31:48: 71000000 INFO @ Sat, 03 Apr 2021 07:31:49: 67000000 INFO @ Sat, 03 Apr 2021 07:31:53: 64000000 INFO @ Sat, 03 Apr 2021 07:31:56: 72000000 INFO @ Sat, 03 Apr 2021 07:31:58: 68000000 INFO @ Sat, 03 Apr 2021 07:32:02: 65000000 INFO @ Sat, 03 Apr 2021 07:32:05: 73000000 INFO @ Sat, 03 Apr 2021 07:32:06: 69000000 INFO @ Sat, 03 Apr 2021 07:32:10: 66000000 INFO @ Sat, 03 Apr 2021 07:32:13: 74000000 INFO @ Sat, 03 Apr 2021 07:32:14: 70000000 INFO @ Sat, 03 Apr 2021 07:32:18: 67000000 INFO @ Sat, 03 Apr 2021 07:32:22: 75000000 INFO @ Sat, 03 Apr 2021 07:32:23: 71000000 INFO @ Sat, 03 Apr 2021 07:32:27: 68000000 INFO @ Sat, 03 Apr 2021 07:32:30: 76000000 INFO @ Sat, 03 Apr 2021 07:32:31: 72000000 INFO @ Sat, 03 Apr 2021 07:32:35: 69000000 INFO @ Sat, 03 Apr 2021 07:32:38: 77000000 INFO @ Sat, 03 Apr 2021 07:32:39: 73000000 INFO @ Sat, 03 Apr 2021 07:32:43: 70000000 INFO @ Sat, 03 Apr 2021 07:32:47: 78000000 INFO @ Sat, 03 Apr 2021 07:32:48: 74000000 INFO @ Sat, 03 Apr 2021 07:32:51: 71000000 INFO @ Sat, 03 Apr 2021 07:32:55: 79000000 INFO @ Sat, 03 Apr 2021 07:32:56: 75000000 INFO @ Sat, 03 Apr 2021 07:33:00: 72000000 INFO @ Sat, 03 Apr 2021 07:33:03: 80000000 INFO @ Sat, 03 Apr 2021 07:33:04: 76000000 INFO @ Sat, 03 Apr 2021 07:33:08: 73000000 INFO @ Sat, 03 Apr 2021 07:33:11: 81000000 INFO @ Sat, 03 Apr 2021 07:33:13: 77000000 INFO @ Sat, 03 Apr 2021 07:33:17: 74000000 INFO @ Sat, 03 Apr 2021 07:33:20: 82000000 INFO @ Sat, 03 Apr 2021 07:33:21: 78000000 INFO @ Sat, 03 Apr 2021 07:33:25: 75000000 INFO @ Sat, 03 Apr 2021 07:33:28: 83000000 INFO @ Sat, 03 Apr 2021 07:33:30: 79000000 INFO @ Sat, 03 Apr 2021 07:33:34: 76000000 INFO @ Sat, 03 Apr 2021 07:33:36: 84000000 INFO @ Sat, 03 Apr 2021 07:33:38: 80000000 INFO @ Sat, 03 Apr 2021 07:33:42: 77000000 INFO @ Sat, 03 Apr 2021 07:33:45: 85000000 INFO @ Sat, 03 Apr 2021 07:33:46: 81000000 INFO @ Sat, 03 Apr 2021 07:33:51: 78000000 INFO @ Sat, 03 Apr 2021 07:33:53: 86000000 INFO @ Sat, 03 Apr 2021 07:33:55: 82000000 INFO @ Sat, 03 Apr 2021 07:33:59: 79000000 INFO @ Sat, 03 Apr 2021 07:34:02: 87000000 INFO @ Sat, 03 Apr 2021 07:34:03: 83000000 INFO @ Sat, 03 Apr 2021 07:34:03: #1 tag size is determined as 50 bps INFO @ Sat, 03 Apr 2021 07:34:03: #1 tag size = 50 INFO @ Sat, 03 Apr 2021 07:34:03: #1 total tags in treatment: 39959815 INFO @ Sat, 03 Apr 2021 07:34:03: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 07:34:03: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 07:34:04: #1 tags after filtering in treatment: 23932051 INFO @ Sat, 03 Apr 2021 07:34:04: #1 Redundant rate of treatment: 0.40 INFO @ Sat, 03 Apr 2021 07:34:04: #1 finished! INFO @ Sat, 03 Apr 2021 07:34:04: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 07:34:04: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 07:34:06: #2 number of paired peaks: 212 WARNING @ Sat, 03 Apr 2021 07:34:06: Fewer paired peaks (212) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 212 pairs to build model! INFO @ Sat, 03 Apr 2021 07:34:06: start model_add_line... INFO @ Sat, 03 Apr 2021 07:34:06: start X-correlation... INFO @ Sat, 03 Apr 2021 07:34:06: end of X-cor INFO @ Sat, 03 Apr 2021 07:34:06: #2 finished! INFO @ Sat, 03 Apr 2021 07:34:06: #2 predicted fragment length is 42 bps INFO @ Sat, 03 Apr 2021 07:34:06: #2 alternative fragment length(s) may be 4,12,42 bps INFO @ Sat, 03 Apr 2021 07:34:06: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX4517993/SRX4517993.05_model.r WARNING @ Sat, 03 Apr 2021 07:34:06: #2 Since the d (42) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 07:34:06: #2 You may need to consider one of the other alternative d(s): 4,12,42 WARNING @ Sat, 03 Apr 2021 07:34:06: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 07:34:06: #3 Call peaks... INFO @ Sat, 03 Apr 2021 07:34:06: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 07:34:08: 80000000 INFO @ Sat, 03 Apr 2021 07:34:11: 84000000 INFO @ Sat, 03 Apr 2021 07:34:16: 81000000 INFO @ Sat, 03 Apr 2021 07:34:19: 85000000 INFO @ Sat, 03 Apr 2021 07:34:24: 82000000 INFO @ Sat, 03 Apr 2021 07:34:27: 86000000 INFO @ Sat, 03 Apr 2021 07:34:33: 83000000 INFO @ Sat, 03 Apr 2021 07:34:36: 87000000 INFO @ Sat, 03 Apr 2021 07:34:37: #1 tag size is determined as 50 bps INFO @ Sat, 03 Apr 2021 07:34:37: #1 tag size = 50 INFO @ Sat, 03 Apr 2021 07:34:37: #1 total tags in treatment: 39959815 INFO @ Sat, 03 Apr 2021 07:34:37: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 07:34:37: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 07:34:38: #1 tags after filtering in treatment: 23932051 INFO @ Sat, 03 Apr 2021 07:34:38: #1 Redundant rate of treatment: 0.40 INFO @ Sat, 03 Apr 2021 07:34:38: #1 finished! INFO @ Sat, 03 Apr 2021 07:34:38: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 07:34:38: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 07:34:40: #2 number of paired peaks: 212 WARNING @ Sat, 03 Apr 2021 07:34:40: Fewer paired peaks (212) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 212 pairs to build model! INFO @ Sat, 03 Apr 2021 07:34:40: start model_add_line... INFO @ Sat, 03 Apr 2021 07:34:40: start X-correlation... INFO @ Sat, 03 Apr 2021 07:34:40: end of X-cor INFO @ Sat, 03 Apr 2021 07:34:40: #2 finished! INFO @ Sat, 03 Apr 2021 07:34:40: #2 predicted fragment length is 42 bps INFO @ Sat, 03 Apr 2021 07:34:40: #2 alternative fragment length(s) may be 4,12,42 bps INFO @ Sat, 03 Apr 2021 07:34:40: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX4517993/SRX4517993.10_model.r WARNING @ Sat, 03 Apr 2021 07:34:40: #2 Since the d (42) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 07:34:40: #2 You may need to consider one of the other alternative d(s): 4,12,42 WARNING @ Sat, 03 Apr 2021 07:34:40: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 07:34:40: #3 Call peaks... INFO @ Sat, 03 Apr 2021 07:34:40: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 07:34:41: 84000000 INFO @ Sat, 03 Apr 2021 07:34:48: 85000000 INFO @ Sat, 03 Apr 2021 07:34:56: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 07:34:56: 86000000 INFO @ Sat, 03 Apr 2021 07:35:03: 87000000 INFO @ Sat, 03 Apr 2021 07:35:05: #1 tag size is determined as 50 bps INFO @ Sat, 03 Apr 2021 07:35:05: #1 tag size = 50 INFO @ Sat, 03 Apr 2021 07:35:05: #1 total tags in treatment: 39959815 INFO @ Sat, 03 Apr 2021 07:35:05: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 07:35:05: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 07:35:06: #1 tags after filtering in treatment: 23932051 INFO @ Sat, 03 Apr 2021 07:35:06: #1 Redundant rate of treatment: 0.40 INFO @ Sat, 03 Apr 2021 07:35:06: #1 finished! INFO @ Sat, 03 Apr 2021 07:35:06: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 07:35:06: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 07:35:08: #2 number of paired peaks: 212 WARNING @ Sat, 03 Apr 2021 07:35:08: Fewer paired peaks (212) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 212 pairs to build model! INFO @ Sat, 03 Apr 2021 07:35:08: start model_add_line... INFO @ Sat, 03 Apr 2021 07:35:08: start X-correlation... INFO @ Sat, 03 Apr 2021 07:35:08: end of X-cor INFO @ Sat, 03 Apr 2021 07:35:08: #2 finished! INFO @ Sat, 03 Apr 2021 07:35:08: #2 predicted fragment length is 42 bps INFO @ Sat, 03 Apr 2021 07:35:08: #2 alternative fragment length(s) may be 4,12,42 bps INFO @ Sat, 03 Apr 2021 07:35:08: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX4517993/SRX4517993.20_model.r WARNING @ Sat, 03 Apr 2021 07:35:08: #2 Since the d (42) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 07:35:08: #2 You may need to consider one of the other alternative d(s): 4,12,42 WARNING @ Sat, 03 Apr 2021 07:35:08: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 07:35:08: #3 Call peaks... INFO @ Sat, 03 Apr 2021 07:35:08: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 07:35:21: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX4517993/SRX4517993.05_peaks.xls INFO @ Sat, 03 Apr 2021 07:35:21: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX4517993/SRX4517993.05_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 07:35:21: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX4517993/SRX4517993.05_summits.bed INFO @ Sat, 03 Apr 2021 07:35:21: Done! pass1 - making usageList (14 chroms): 2 millis pass2 - checking and writing primary data (10407 records, 4 fields): 12 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 07:35:31: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 07:35:56: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX4517993/SRX4517993.10_peaks.xls INFO @ Sat, 03 Apr 2021 07:35:56: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX4517993/SRX4517993.10_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 07:35:56: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX4517993/SRX4517993.10_summits.bed INFO @ Sat, 03 Apr 2021 07:35:56: Done! pass1 - making usageList (13 chroms): 1 millis pass2 - checking and writing primary data (2851 records, 4 fields): 5 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 07:35:59: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 07:36:25: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX4517993/SRX4517993.20_peaks.xls INFO @ Sat, 03 Apr 2021 07:36:25: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX4517993/SRX4517993.20_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 07:36:25: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX4517993/SRX4517993.20_summits.bed INFO @ Sat, 03 Apr 2021 07:36:25: Done! pass1 - making usageList (9 chroms): 0 millis pass2 - checking and writing primary data (87 records, 4 fields): 2 millis CompletedMACS2peakCalling