Job ID = 12265218 SRX = SRX4517991 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 52403791 spots for SRR7655595/SRR7655595.sra Written 52403791 spots for SRR7655595/SRR7655595.sra fastq に変換しました。 bowtie でマッピング中... Your job 12265575 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:40:56 52403791 reads; of these: 52403791 (100.00%) were paired; of these: 6844371 (13.06%) aligned concordantly 0 times 43610653 (83.22%) aligned concordantly exactly 1 time 1948767 (3.72%) aligned concordantly >1 times ---- 6844371 pairs aligned concordantly 0 times; of these: 3798740 (55.50%) aligned discordantly 1 time ---- 3045631 pairs aligned 0 times concordantly or discordantly; of these: 6091262 mates make up the pairs; of these: 4660682 (76.51%) aligned 0 times 1042286 (17.11%) aligned exactly 1 time 388294 (6.37%) aligned >1 times 95.55% overall alignment rate Time searching: 00:40:56 Overall time: 00:40:56 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 44 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 5554664 / 48604931 = 0.1143 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 07:38:03: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX4517991/SRX4517991.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX4517991/SRX4517991.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX4517991/SRX4517991.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX4517991/SRX4517991.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 07:38:03: #1 read tag files... INFO @ Sat, 03 Apr 2021 07:38:03: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 07:38:11: 1000000 INFO @ Sat, 03 Apr 2021 07:38:18: 2000000 INFO @ Sat, 03 Apr 2021 07:38:25: 3000000 WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 07:38:33: 4000000 INFO @ Sat, 03 Apr 2021 07:38:33: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX4517991/SRX4517991.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX4517991/SRX4517991.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX4517991/SRX4517991.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX4517991/SRX4517991.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 07:38:33: #1 read tag files... INFO @ Sat, 03 Apr 2021 07:38:33: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 07:38:40: 1000000 INFO @ Sat, 03 Apr 2021 07:38:40: 5000000 INFO @ Sat, 03 Apr 2021 07:38:46: 2000000 INFO @ Sat, 03 Apr 2021 07:38:48: 6000000 INFO @ Sat, 03 Apr 2021 07:38:53: 3000000 INFO @ Sat, 03 Apr 2021 07:38:55: 7000000 INFO @ Sat, 03 Apr 2021 07:38:59: 4000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 07:39:02: 8000000 INFO @ Sat, 03 Apr 2021 07:39:03: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX4517991/SRX4517991.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX4517991/SRX4517991.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX4517991/SRX4517991.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX4517991/SRX4517991.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 07:39:03: #1 read tag files... INFO @ Sat, 03 Apr 2021 07:39:03: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 07:39:06: 5000000 INFO @ Sat, 03 Apr 2021 07:39:10: 1000000 INFO @ Sat, 03 Apr 2021 07:39:11: 9000000 INFO @ Sat, 03 Apr 2021 07:39:13: 6000000 INFO @ Sat, 03 Apr 2021 07:39:17: 2000000 INFO @ Sat, 03 Apr 2021 07:39:18: 10000000 INFO @ Sat, 03 Apr 2021 07:39:19: 7000000 INFO @ Sat, 03 Apr 2021 07:39:24: 3000000 INFO @ Sat, 03 Apr 2021 07:39:26: 11000000 INFO @ Sat, 03 Apr 2021 07:39:26: 8000000 INFO @ Sat, 03 Apr 2021 07:39:31: 4000000 INFO @ Sat, 03 Apr 2021 07:39:33: 9000000 INFO @ Sat, 03 Apr 2021 07:39:33: 12000000 INFO @ Sat, 03 Apr 2021 07:39:37: 5000000 INFO @ Sat, 03 Apr 2021 07:39:39: 10000000 INFO @ Sat, 03 Apr 2021 07:39:41: 13000000 INFO @ Sat, 03 Apr 2021 07:39:44: 6000000 INFO @ Sat, 03 Apr 2021 07:39:47: 11000000 INFO @ Sat, 03 Apr 2021 07:39:49: 14000000 INFO @ Sat, 03 Apr 2021 07:39:51: 7000000 INFO @ Sat, 03 Apr 2021 07:39:53: 12000000 INFO @ Sat, 03 Apr 2021 07:39:56: 15000000 INFO @ Sat, 03 Apr 2021 07:39:57: 8000000 INFO @ Sat, 03 Apr 2021 07:40:00: 13000000 INFO @ Sat, 03 Apr 2021 07:40:04: 16000000 INFO @ Sat, 03 Apr 2021 07:40:04: 9000000 INFO @ Sat, 03 Apr 2021 07:40:07: 14000000 INFO @ Sat, 03 Apr 2021 07:40:11: 10000000 INFO @ Sat, 03 Apr 2021 07:40:11: 17000000 INFO @ Sat, 03 Apr 2021 07:40:13: 15000000 INFO @ Sat, 03 Apr 2021 07:40:17: 11000000 INFO @ Sat, 03 Apr 2021 07:40:19: 18000000 INFO @ Sat, 03 Apr 2021 07:40:20: 16000000 INFO @ Sat, 03 Apr 2021 07:40:24: 12000000 INFO @ Sat, 03 Apr 2021 07:40:26: 17000000 INFO @ Sat, 03 Apr 2021 07:40:27: 19000000 INFO @ Sat, 03 Apr 2021 07:40:31: 13000000 INFO @ Sat, 03 Apr 2021 07:40:33: 18000000 INFO @ Sat, 03 Apr 2021 07:40:34: 20000000 INFO @ Sat, 03 Apr 2021 07:40:37: 14000000 INFO @ Sat, 03 Apr 2021 07:40:40: 19000000 INFO @ Sat, 03 Apr 2021 07:40:42: 21000000 INFO @ Sat, 03 Apr 2021 07:40:44: 15000000 INFO @ Sat, 03 Apr 2021 07:40:47: 20000000 INFO @ Sat, 03 Apr 2021 07:40:49: 22000000 INFO @ Sat, 03 Apr 2021 07:40:50: 16000000 INFO @ Sat, 03 Apr 2021 07:40:54: 21000000 INFO @ Sat, 03 Apr 2021 07:40:57: 23000000 INFO @ Sat, 03 Apr 2021 07:40:57: 17000000 INFO @ Sat, 03 Apr 2021 07:41:01: 22000000 INFO @ Sat, 03 Apr 2021 07:41:04: 18000000 INFO @ Sat, 03 Apr 2021 07:41:04: 24000000 INFO @ Sat, 03 Apr 2021 07:41:07: 23000000 INFO @ Sat, 03 Apr 2021 07:41:10: 19000000 INFO @ Sat, 03 Apr 2021 07:41:12: 25000000 INFO @ Sat, 03 Apr 2021 07:41:14: 24000000 INFO @ Sat, 03 Apr 2021 07:41:17: 20000000 INFO @ Sat, 03 Apr 2021 07:41:19: 26000000 INFO @ Sat, 03 Apr 2021 07:41:21: 25000000 INFO @ Sat, 03 Apr 2021 07:41:23: 21000000 INFO @ Sat, 03 Apr 2021 07:41:27: 27000000 INFO @ Sat, 03 Apr 2021 07:41:28: 26000000 INFO @ Sat, 03 Apr 2021 07:41:30: 22000000 INFO @ Sat, 03 Apr 2021 07:41:34: 28000000 INFO @ Sat, 03 Apr 2021 07:41:34: 27000000 INFO @ Sat, 03 Apr 2021 07:41:37: 23000000 INFO @ Sat, 03 Apr 2021 07:41:41: 28000000 INFO @ Sat, 03 Apr 2021 07:41:41: 29000000 INFO @ Sat, 03 Apr 2021 07:41:43: 24000000 INFO @ Sat, 03 Apr 2021 07:41:47: 29000000 INFO @ Sat, 03 Apr 2021 07:41:49: 30000000 INFO @ Sat, 03 Apr 2021 07:41:50: 25000000 INFO @ Sat, 03 Apr 2021 07:41:54: 30000000 INFO @ Sat, 03 Apr 2021 07:41:56: 31000000 INFO @ Sat, 03 Apr 2021 07:41:56: 26000000 INFO @ Sat, 03 Apr 2021 07:42:01: 31000000 INFO @ Sat, 03 Apr 2021 07:42:03: 27000000 INFO @ Sat, 03 Apr 2021 07:42:03: 32000000 INFO @ Sat, 03 Apr 2021 07:42:07: 32000000 INFO @ Sat, 03 Apr 2021 07:42:10: 28000000 INFO @ Sat, 03 Apr 2021 07:42:11: 33000000 INFO @ Sat, 03 Apr 2021 07:42:14: 33000000 INFO @ Sat, 03 Apr 2021 07:42:16: 29000000 INFO @ Sat, 03 Apr 2021 07:42:18: 34000000 INFO @ Sat, 03 Apr 2021 07:42:21: 34000000 INFO @ Sat, 03 Apr 2021 07:42:23: 30000000 INFO @ Sat, 03 Apr 2021 07:42:26: 35000000 INFO @ Sat, 03 Apr 2021 07:42:27: 35000000 INFO @ Sat, 03 Apr 2021 07:42:29: 31000000 INFO @ Sat, 03 Apr 2021 07:42:34: 36000000 INFO @ Sat, 03 Apr 2021 07:42:35: 36000000 INFO @ Sat, 03 Apr 2021 07:42:36: 32000000 INFO @ Sat, 03 Apr 2021 07:42:40: 37000000 INFO @ Sat, 03 Apr 2021 07:42:42: 37000000 INFO @ Sat, 03 Apr 2021 07:42:43: 33000000 INFO @ Sat, 03 Apr 2021 07:42:47: 38000000 INFO @ Sat, 03 Apr 2021 07:42:49: 34000000 INFO @ Sat, 03 Apr 2021 07:42:50: 38000000 INFO @ Sat, 03 Apr 2021 07:42:53: 39000000 INFO @ Sat, 03 Apr 2021 07:42:56: 35000000 INFO @ Sat, 03 Apr 2021 07:42:57: 39000000 INFO @ Sat, 03 Apr 2021 07:42:59: 40000000 INFO @ Sat, 03 Apr 2021 07:43:03: 36000000 INFO @ Sat, 03 Apr 2021 07:43:05: 40000000 INFO @ Sat, 03 Apr 2021 07:43:06: 41000000 INFO @ Sat, 03 Apr 2021 07:43:10: 37000000 INFO @ Sat, 03 Apr 2021 07:43:12: 41000000 INFO @ Sat, 03 Apr 2021 07:43:13: 42000000 INFO @ Sat, 03 Apr 2021 07:43:17: 38000000 INFO @ Sat, 03 Apr 2021 07:43:20: 43000000 INFO @ Sat, 03 Apr 2021 07:43:20: 42000000 INFO @ Sat, 03 Apr 2021 07:43:24: 39000000 INFO @ Sat, 03 Apr 2021 07:43:27: 44000000 INFO @ Sat, 03 Apr 2021 07:43:27: 43000000 INFO @ Sat, 03 Apr 2021 07:43:31: 40000000 INFO @ Sat, 03 Apr 2021 07:43:34: 45000000 INFO @ Sat, 03 Apr 2021 07:43:35: 44000000 INFO @ Sat, 03 Apr 2021 07:43:38: 41000000 INFO @ Sat, 03 Apr 2021 07:43:41: 46000000 INFO @ Sat, 03 Apr 2021 07:43:42: 45000000 INFO @ Sat, 03 Apr 2021 07:43:45: 42000000 INFO @ Sat, 03 Apr 2021 07:43:47: 47000000 INFO @ Sat, 03 Apr 2021 07:43:50: 46000000 INFO @ Sat, 03 Apr 2021 07:43:51: 43000000 INFO @ Sat, 03 Apr 2021 07:43:54: 48000000 INFO @ Sat, 03 Apr 2021 07:43:57: 44000000 INFO @ Sat, 03 Apr 2021 07:43:58: 47000000 INFO @ Sat, 03 Apr 2021 07:44:00: 49000000 INFO @ Sat, 03 Apr 2021 07:44:04: 45000000 INFO @ Sat, 03 Apr 2021 07:44:05: 48000000 INFO @ Sat, 03 Apr 2021 07:44:06: 50000000 INFO @ Sat, 03 Apr 2021 07:44:10: 46000000 INFO @ Sat, 03 Apr 2021 07:44:12: 49000000 INFO @ Sat, 03 Apr 2021 07:44:13: 51000000 INFO @ Sat, 03 Apr 2021 07:44:17: 47000000 INFO @ Sat, 03 Apr 2021 07:44:18: 50000000 INFO @ Sat, 03 Apr 2021 07:44:19: 52000000 INFO @ Sat, 03 Apr 2021 07:44:23: 48000000 INFO @ Sat, 03 Apr 2021 07:44:25: 53000000 INFO @ Sat, 03 Apr 2021 07:44:25: 51000000 INFO @ Sat, 03 Apr 2021 07:44:29: 49000000 INFO @ Sat, 03 Apr 2021 07:44:31: 54000000 INFO @ Sat, 03 Apr 2021 07:44:32: 52000000 INFO @ Sat, 03 Apr 2021 07:44:35: 50000000 INFO @ Sat, 03 Apr 2021 07:44:37: 55000000 INFO @ Sat, 03 Apr 2021 07:44:39: 53000000 INFO @ Sat, 03 Apr 2021 07:44:42: 51000000 INFO @ Sat, 03 Apr 2021 07:44:44: 56000000 INFO @ Sat, 03 Apr 2021 07:44:46: 54000000 INFO @ Sat, 03 Apr 2021 07:44:48: 52000000 INFO @ Sat, 03 Apr 2021 07:44:50: 57000000 INFO @ Sat, 03 Apr 2021 07:44:53: 55000000 INFO @ Sat, 03 Apr 2021 07:44:54: 53000000 INFO @ Sat, 03 Apr 2021 07:44:56: 58000000 INFO @ Sat, 03 Apr 2021 07:45:00: 56000000 INFO @ Sat, 03 Apr 2021 07:45:00: 54000000 INFO @ Sat, 03 Apr 2021 07:45:02: 59000000 INFO @ Sat, 03 Apr 2021 07:45:06: 57000000 INFO @ Sat, 03 Apr 2021 07:45:07: 55000000 INFO @ Sat, 03 Apr 2021 07:45:09: 60000000 INFO @ Sat, 03 Apr 2021 07:45:13: 58000000 INFO @ Sat, 03 Apr 2021 07:45:14: 56000000 INFO @ Sat, 03 Apr 2021 07:45:16: 61000000 INFO @ Sat, 03 Apr 2021 07:45:20: 59000000 INFO @ Sat, 03 Apr 2021 07:45:21: 57000000 INFO @ Sat, 03 Apr 2021 07:45:23: 62000000 INFO @ Sat, 03 Apr 2021 07:45:27: 60000000 INFO @ Sat, 03 Apr 2021 07:45:27: 58000000 INFO @ Sat, 03 Apr 2021 07:45:29: 63000000 INFO @ Sat, 03 Apr 2021 07:45:33: 59000000 INFO @ Sat, 03 Apr 2021 07:45:34: 61000000 INFO @ Sat, 03 Apr 2021 07:45:35: 64000000 INFO @ Sat, 03 Apr 2021 07:45:40: 60000000 INFO @ Sat, 03 Apr 2021 07:45:41: 62000000 INFO @ Sat, 03 Apr 2021 07:45:42: 65000000 INFO @ Sat, 03 Apr 2021 07:45:46: 61000000 INFO @ Sat, 03 Apr 2021 07:45:48: 63000000 INFO @ Sat, 03 Apr 2021 07:45:48: 66000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Sat, 03 Apr 2021 07:45:52: 62000000 INFO @ Sat, 03 Apr 2021 07:45:54: 67000000 INFO @ Sat, 03 Apr 2021 07:45:54: 64000000 INFO @ Sat, 03 Apr 2021 07:45:59: 63000000 INFO @ Sat, 03 Apr 2021 07:46:00: 68000000 INFO @ Sat, 03 Apr 2021 07:46:01: 65000000 INFO @ Sat, 03 Apr 2021 07:46:05: 64000000 INFO @ Sat, 03 Apr 2021 07:46:07: 69000000 INFO @ Sat, 03 Apr 2021 07:46:08: 66000000 INFO @ Sat, 03 Apr 2021 07:46:11: 65000000 INFO @ Sat, 03 Apr 2021 07:46:13: 70000000 INFO @ Sat, 03 Apr 2021 07:46:15: 67000000 INFO @ Sat, 03 Apr 2021 07:46:17: 66000000 INFO @ Sat, 03 Apr 2021 07:46:19: 71000000 INFO @ Sat, 03 Apr 2021 07:46:22: 68000000 INFO @ Sat, 03 Apr 2021 07:46:23: 67000000 INFO @ Sat, 03 Apr 2021 07:46:25: 72000000 INFO @ Sat, 03 Apr 2021 07:46:29: 69000000 INFO @ Sat, 03 Apr 2021 07:46:30: 68000000 INFO @ Sat, 03 Apr 2021 07:46:31: 73000000 INFO @ Sat, 03 Apr 2021 07:46:36: 70000000 INFO @ Sat, 03 Apr 2021 07:46:36: 69000000 INFO @ Sat, 03 Apr 2021 07:46:38: 74000000 INFO @ Sat, 03 Apr 2021 07:46:42: 70000000 INFO @ Sat, 03 Apr 2021 07:46:43: 71000000 INFO @ Sat, 03 Apr 2021 07:46:46: 75000000 INFO @ Sat, 03 Apr 2021 07:46:49: 71000000 INFO @ Sat, 03 Apr 2021 07:46:50: 72000000 INFO @ Sat, 03 Apr 2021 07:46:52: 76000000 INFO @ Sat, 03 Apr 2021 07:46:55: 72000000 INFO @ Sat, 03 Apr 2021 07:46:56: 73000000 INFO @ Sat, 03 Apr 2021 07:46:59: 77000000 INFO @ Sat, 03 Apr 2021 07:47:02: 73000000 INFO @ Sat, 03 Apr 2021 07:47:03: 74000000 INFO @ Sat, 03 Apr 2021 07:47:06: 78000000 INFO @ Sat, 03 Apr 2021 07:47:09: 74000000 INFO @ Sat, 03 Apr 2021 07:47:10: 75000000 INFO @ Sat, 03 Apr 2021 07:47:13: 79000000 INFO @ Sat, 03 Apr 2021 07:47:16: 75000000 INFO @ Sat, 03 Apr 2021 07:47:17: 76000000 INFO @ Sat, 03 Apr 2021 07:47:19: 80000000 INFO @ Sat, 03 Apr 2021 07:47:23: 76000000 INFO @ Sat, 03 Apr 2021 07:47:24: 77000000 INFO @ Sat, 03 Apr 2021 07:47:26: 81000000 INFO @ Sat, 03 Apr 2021 07:47:29: 77000000 INFO @ Sat, 03 Apr 2021 07:47:30: 78000000 INFO @ Sat, 03 Apr 2021 07:47:33: 82000000 INFO @ Sat, 03 Apr 2021 07:47:36: 78000000 INFO @ Sat, 03 Apr 2021 07:47:37: 79000000 INFO @ Sat, 03 Apr 2021 07:47:40: 83000000 BigWig に変換しました。 INFO @ Sat, 03 Apr 2021 07:47:43: 79000000 INFO @ Sat, 03 Apr 2021 07:47:44: 80000000 INFO @ Sat, 03 Apr 2021 07:47:46: 84000000 INFO @ Sat, 03 Apr 2021 07:47:50: 80000000 INFO @ Sat, 03 Apr 2021 07:47:50: 81000000 INFO @ Sat, 03 Apr 2021 07:47:53: 85000000 INFO @ Sat, 03 Apr 2021 07:47:56: 81000000 INFO @ Sat, 03 Apr 2021 07:47:57: 82000000 INFO @ Sat, 03 Apr 2021 07:48:00: 86000000 INFO @ Sat, 03 Apr 2021 07:48:03: 82000000 INFO @ Sat, 03 Apr 2021 07:48:04: 83000000 INFO @ Sat, 03 Apr 2021 07:48:07: 87000000 INFO @ Sat, 03 Apr 2021 07:48:10: 83000000 INFO @ Sat, 03 Apr 2021 07:48:11: 84000000 INFO @ Sat, 03 Apr 2021 07:48:13: 88000000 INFO @ Sat, 03 Apr 2021 07:48:17: 84000000 INFO @ Sat, 03 Apr 2021 07:48:18: 85000000 INFO @ Sat, 03 Apr 2021 07:48:20: 89000000 INFO @ Sat, 03 Apr 2021 07:48:21: #1 tag size is determined as 50 bps INFO @ Sat, 03 Apr 2021 07:48:21: #1 tag size = 50 INFO @ Sat, 03 Apr 2021 07:48:21: #1 total tags in treatment: 40759060 INFO @ Sat, 03 Apr 2021 07:48:21: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 07:48:21: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 07:48:22: #1 tags after filtering in treatment: 24249030 INFO @ Sat, 03 Apr 2021 07:48:22: #1 Redundant rate of treatment: 0.41 INFO @ Sat, 03 Apr 2021 07:48:22: #1 finished! INFO @ Sat, 03 Apr 2021 07:48:22: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 07:48:22: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 07:48:23: 85000000 INFO @ Sat, 03 Apr 2021 07:48:24: #2 number of paired peaks: 209 WARNING @ Sat, 03 Apr 2021 07:48:24: Fewer paired peaks (209) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 209 pairs to build model! INFO @ Sat, 03 Apr 2021 07:48:24: start model_add_line... INFO @ Sat, 03 Apr 2021 07:48:24: 86000000 INFO @ Sat, 03 Apr 2021 07:48:24: start X-correlation... INFO @ Sat, 03 Apr 2021 07:48:24: end of X-cor INFO @ Sat, 03 Apr 2021 07:48:24: #2 finished! INFO @ Sat, 03 Apr 2021 07:48:24: #2 predicted fragment length is 40 bps INFO @ Sat, 03 Apr 2021 07:48:24: #2 alternative fragment length(s) may be 4,40,564 bps INFO @ Sat, 03 Apr 2021 07:48:24: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX4517991/SRX4517991.10_model.r WARNING @ Sat, 03 Apr 2021 07:48:24: #2 Since the d (40) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 07:48:24: #2 You may need to consider one of the other alternative d(s): 4,40,564 WARNING @ Sat, 03 Apr 2021 07:48:24: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 07:48:24: #3 Call peaks... INFO @ Sat, 03 Apr 2021 07:48:24: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 07:48:29: 86000000 INFO @ Sat, 03 Apr 2021 07:48:31: 87000000 INFO @ Sat, 03 Apr 2021 07:48:35: 87000000 INFO @ Sat, 03 Apr 2021 07:48:38: 88000000 INFO @ Sat, 03 Apr 2021 07:48:41: 88000000 INFO @ Sat, 03 Apr 2021 07:48:45: 89000000 INFO @ Sat, 03 Apr 2021 07:48:46: #1 tag size is determined as 50 bps INFO @ Sat, 03 Apr 2021 07:48:46: #1 tag size = 50 INFO @ Sat, 03 Apr 2021 07:48:46: #1 total tags in treatment: 40759060 INFO @ Sat, 03 Apr 2021 07:48:46: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 07:48:46: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 07:48:47: #1 tags after filtering in treatment: 24249030 INFO @ Sat, 03 Apr 2021 07:48:47: #1 Redundant rate of treatment: 0.41 INFO @ Sat, 03 Apr 2021 07:48:47: #1 finished! INFO @ Sat, 03 Apr 2021 07:48:47: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 07:48:47: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 07:48:48: 89000000 INFO @ Sat, 03 Apr 2021 07:48:49: #1 tag size is determined as 50 bps INFO @ Sat, 03 Apr 2021 07:48:49: #1 tag size = 50 INFO @ Sat, 03 Apr 2021 07:48:49: #1 total tags in treatment: 40759060 INFO @ Sat, 03 Apr 2021 07:48:49: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 07:48:49: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 07:48:49: #2 number of paired peaks: 209 WARNING @ Sat, 03 Apr 2021 07:48:49: Fewer paired peaks (209) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 209 pairs to build model! INFO @ Sat, 03 Apr 2021 07:48:49: start model_add_line... INFO @ Sat, 03 Apr 2021 07:48:49: start X-correlation... INFO @ Sat, 03 Apr 2021 07:48:49: end of X-cor INFO @ Sat, 03 Apr 2021 07:48:49: #2 finished! INFO @ Sat, 03 Apr 2021 07:48:49: #2 predicted fragment length is 40 bps INFO @ Sat, 03 Apr 2021 07:48:49: #2 alternative fragment length(s) may be 4,40,564 bps INFO @ Sat, 03 Apr 2021 07:48:49: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX4517991/SRX4517991.05_model.r WARNING @ Sat, 03 Apr 2021 07:48:49: #2 Since the d (40) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 07:48:49: #2 You may need to consider one of the other alternative d(s): 4,40,564 WARNING @ Sat, 03 Apr 2021 07:48:49: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 07:48:49: #3 Call peaks... INFO @ Sat, 03 Apr 2021 07:48:49: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 07:48:50: #1 tags after filtering in treatment: 24249030 INFO @ Sat, 03 Apr 2021 07:48:50: #1 Redundant rate of treatment: 0.41 INFO @ Sat, 03 Apr 2021 07:48:50: #1 finished! INFO @ Sat, 03 Apr 2021 07:48:50: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 07:48:50: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 07:48:52: #2 number of paired peaks: 209 WARNING @ Sat, 03 Apr 2021 07:48:52: Fewer paired peaks (209) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 209 pairs to build model! INFO @ Sat, 03 Apr 2021 07:48:52: start model_add_line... INFO @ Sat, 03 Apr 2021 07:48:52: start X-correlation... INFO @ Sat, 03 Apr 2021 07:48:52: end of X-cor INFO @ Sat, 03 Apr 2021 07:48:52: #2 finished! INFO @ Sat, 03 Apr 2021 07:48:52: #2 predicted fragment length is 40 bps INFO @ Sat, 03 Apr 2021 07:48:52: #2 alternative fragment length(s) may be 4,40,564 bps INFO @ Sat, 03 Apr 2021 07:48:52: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX4517991/SRX4517991.20_model.r WARNING @ Sat, 03 Apr 2021 07:48:52: #2 Since the d (40) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 07:48:52: #2 You may need to consider one of the other alternative d(s): 4,40,564 WARNING @ Sat, 03 Apr 2021 07:48:52: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 07:48:52: #3 Call peaks... INFO @ Sat, 03 Apr 2021 07:48:52: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 07:49:20: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 07:49:44: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 07:49:48: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 07:49:50: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX4517991/SRX4517991.10_peaks.xls INFO @ Sat, 03 Apr 2021 07:49:50: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX4517991/SRX4517991.10_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 07:49:50: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX4517991/SRX4517991.10_summits.bed INFO @ Sat, 03 Apr 2021 07:49:50: Done! pass1 - making usageList (13 chroms): 2 millis pass2 - checking and writing primary data (2365 records, 4 fields): 9 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 07:50:12: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX4517991/SRX4517991.05_peaks.xls INFO @ Sat, 03 Apr 2021 07:50:12: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX4517991/SRX4517991.05_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 07:50:12: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX4517991/SRX4517991.05_summits.bed INFO @ Sat, 03 Apr 2021 07:50:12: Done! pass1 - making usageList (14 chroms): 5 millis pass2 - checking and writing primary data (10149 records, 4 fields): 14 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 07:50:16: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX4517991/SRX4517991.20_peaks.xls INFO @ Sat, 03 Apr 2021 07:50:16: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX4517991/SRX4517991.20_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 07:50:16: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX4517991/SRX4517991.20_summits.bed INFO @ Sat, 03 Apr 2021 07:50:16: Done! pass1 - making usageList (8 chroms): 1 millis pass2 - checking and writing primary data (48 records, 4 fields): 2 millis CompletedMACS2peakCalling