Job ID = 12265215 SRX = SRX4517989 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 27974346 spots for SRR7655593/SRR7655593.sra Written 27974346 spots for SRR7655593/SRR7655593.sra fastq に変換しました。 bowtie でマッピング中... Your job 12265499 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:24:24 27974346 reads; of these: 27974346 (100.00%) were paired; of these: 3729945 (13.33%) aligned concordantly 0 times 22970246 (82.11%) aligned concordantly exactly 1 time 1274155 (4.55%) aligned concordantly >1 times ---- 3729945 pairs aligned concordantly 0 times; of these: 2030595 (54.44%) aligned discordantly 1 time ---- 1699350 pairs aligned 0 times concordantly or discordantly; of these: 3398700 mates make up the pairs; of these: 2547883 (74.97%) aligned 0 times 559126 (16.45%) aligned exactly 1 time 291691 (8.58%) aligned >1 times 95.45% overall alignment rate Time searching: 00:24:24 Overall time: 00:24:24 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 24 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 1796500 / 25859500 = 0.0695 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 07:04:56: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX4517989/SRX4517989.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX4517989/SRX4517989.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX4517989/SRX4517989.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX4517989/SRX4517989.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 07:04:56: #1 read tag files... INFO @ Sat, 03 Apr 2021 07:04:56: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 07:05:04: 1000000 INFO @ Sat, 03 Apr 2021 07:05:12: 2000000 INFO @ Sat, 03 Apr 2021 07:05:20: 3000000 WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 07:05:24: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX4517989/SRX4517989.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX4517989/SRX4517989.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX4517989/SRX4517989.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX4517989/SRX4517989.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 07:05:24: #1 read tag files... INFO @ Sat, 03 Apr 2021 07:05:24: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 07:05:28: 4000000 INFO @ Sat, 03 Apr 2021 07:05:34: 1000000 INFO @ Sat, 03 Apr 2021 07:05:36: 5000000 INFO @ Sat, 03 Apr 2021 07:05:43: 2000000 INFO @ Sat, 03 Apr 2021 07:05:44: 6000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 07:05:52: 7000000 INFO @ Sat, 03 Apr 2021 07:05:52: 3000000 INFO @ Sat, 03 Apr 2021 07:05:54: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX4517989/SRX4517989.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX4517989/SRX4517989.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX4517989/SRX4517989.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX4517989/SRX4517989.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 07:05:54: #1 read tag files... INFO @ Sat, 03 Apr 2021 07:05:54: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 07:06:00: 8000000 INFO @ Sat, 03 Apr 2021 07:06:02: 4000000 INFO @ Sat, 03 Apr 2021 07:06:04: 1000000 INFO @ Sat, 03 Apr 2021 07:06:09: 9000000 INFO @ Sat, 03 Apr 2021 07:06:11: 5000000 INFO @ Sat, 03 Apr 2021 07:06:13: 2000000 INFO @ Sat, 03 Apr 2021 07:06:17: 10000000 INFO @ Sat, 03 Apr 2021 07:06:20: 6000000 INFO @ Sat, 03 Apr 2021 07:06:23: 3000000 INFO @ Sat, 03 Apr 2021 07:06:25: 11000000 INFO @ Sat, 03 Apr 2021 07:06:30: 7000000 INFO @ Sat, 03 Apr 2021 07:06:33: 4000000 INFO @ Sat, 03 Apr 2021 07:06:33: 12000000 INFO @ Sat, 03 Apr 2021 07:06:39: 8000000 INFO @ Sat, 03 Apr 2021 07:06:41: 13000000 INFO @ Sat, 03 Apr 2021 07:06:43: 5000000 INFO @ Sat, 03 Apr 2021 07:06:49: 9000000 INFO @ Sat, 03 Apr 2021 07:06:49: 14000000 INFO @ Sat, 03 Apr 2021 07:06:53: 6000000 INFO @ Sat, 03 Apr 2021 07:06:58: 15000000 INFO @ Sat, 03 Apr 2021 07:06:58: 10000000 INFO @ Sat, 03 Apr 2021 07:07:03: 7000000 INFO @ Sat, 03 Apr 2021 07:07:06: 16000000 INFO @ Sat, 03 Apr 2021 07:07:08: 11000000 INFO @ Sat, 03 Apr 2021 07:07:13: 8000000 INFO @ Sat, 03 Apr 2021 07:07:14: 17000000 INFO @ Sat, 03 Apr 2021 07:07:17: 12000000 INFO @ Sat, 03 Apr 2021 07:07:22: 18000000 INFO @ Sat, 03 Apr 2021 07:07:23: 9000000 INFO @ Sat, 03 Apr 2021 07:07:28: 13000000 INFO @ Sat, 03 Apr 2021 07:07:30: 19000000 INFO @ Sat, 03 Apr 2021 07:07:34: 10000000 INFO @ Sat, 03 Apr 2021 07:07:39: 14000000 INFO @ Sat, 03 Apr 2021 07:07:39: 20000000 INFO @ Sat, 03 Apr 2021 07:07:44: 11000000 INFO @ Sat, 03 Apr 2021 07:07:47: 21000000 INFO @ Sat, 03 Apr 2021 07:07:50: 15000000 INFO @ Sat, 03 Apr 2021 07:07:54: 12000000 INFO @ Sat, 03 Apr 2021 07:07:55: 22000000 INFO @ Sat, 03 Apr 2021 07:08:01: 16000000 INFO @ Sat, 03 Apr 2021 07:08:04: 23000000 INFO @ Sat, 03 Apr 2021 07:08:05: 13000000 INFO @ Sat, 03 Apr 2021 07:08:11: 17000000 INFO @ Sat, 03 Apr 2021 07:08:13: 24000000 INFO @ Sat, 03 Apr 2021 07:08:15: 14000000 INFO @ Sat, 03 Apr 2021 07:08:21: 25000000 INFO @ Sat, 03 Apr 2021 07:08:22: 18000000 INFO @ Sat, 03 Apr 2021 07:08:25: 15000000 INFO @ Sat, 03 Apr 2021 07:08:30: 26000000 INFO @ Sat, 03 Apr 2021 07:08:33: 19000000 INFO @ Sat, 03 Apr 2021 07:08:35: 16000000 INFO @ Sat, 03 Apr 2021 07:08:40: 27000000 INFO @ Sat, 03 Apr 2021 07:08:44: 20000000 INFO @ Sat, 03 Apr 2021 07:08:46: 17000000 INFO @ Sat, 03 Apr 2021 07:08:49: 28000000 INFO @ Sat, 03 Apr 2021 07:08:55: 21000000 INFO @ Sat, 03 Apr 2021 07:08:58: 18000000 INFO @ Sat, 03 Apr 2021 07:08:58: 29000000 INFO @ Sat, 03 Apr 2021 07:09:06: 22000000 INFO @ Sat, 03 Apr 2021 07:09:07: 30000000 INFO @ Sat, 03 Apr 2021 07:09:08: 19000000 INFO @ Sat, 03 Apr 2021 07:09:15: 31000000 INFO @ Sat, 03 Apr 2021 07:09:17: 23000000 INFO @ Sat, 03 Apr 2021 07:09:19: 20000000 INFO @ Sat, 03 Apr 2021 07:09:24: 32000000 INFO @ Sat, 03 Apr 2021 07:09:28: 24000000 INFO @ Sat, 03 Apr 2021 07:09:30: 21000000 INFO @ Sat, 03 Apr 2021 07:09:33: 33000000 INFO @ Sat, 03 Apr 2021 07:09:40: 25000000 INFO @ Sat, 03 Apr 2021 07:09:40: 22000000 INFO @ Sat, 03 Apr 2021 07:09:42: 34000000 INFO @ Sat, 03 Apr 2021 07:09:51: 35000000 INFO @ Sat, 03 Apr 2021 07:09:51: 23000000 INFO @ Sat, 03 Apr 2021 07:09:51: 26000000 INFO @ Sat, 03 Apr 2021 07:10:00: 36000000 INFO @ Sat, 03 Apr 2021 07:10:02: 24000000 INFO @ Sat, 03 Apr 2021 07:10:02: 27000000 INFO @ Sat, 03 Apr 2021 07:10:09: 37000000 INFO @ Sat, 03 Apr 2021 07:10:12: 25000000 INFO @ Sat, 03 Apr 2021 07:10:13: 28000000 INFO @ Sat, 03 Apr 2021 07:10:18: 38000000 INFO @ Sat, 03 Apr 2021 07:10:21: 26000000 INFO @ Sat, 03 Apr 2021 07:10:24: 29000000 INFO @ Sat, 03 Apr 2021 07:10:27: 39000000 INFO @ Sat, 03 Apr 2021 07:10:31: 27000000 INFO @ Sat, 03 Apr 2021 07:10:34: 30000000 INFO @ Sat, 03 Apr 2021 07:10:37: 40000000 INFO @ Sat, 03 Apr 2021 07:10:40: 28000000 INFO @ Sat, 03 Apr 2021 07:10:45: 31000000 INFO @ Sat, 03 Apr 2021 07:10:46: 41000000 INFO @ Sat, 03 Apr 2021 07:10:51: 29000000 INFO @ Sat, 03 Apr 2021 07:10:55: 32000000 INFO @ Sat, 03 Apr 2021 07:10:56: 42000000 INFO @ Sat, 03 Apr 2021 07:11:01: 30000000 INFO @ Sat, 03 Apr 2021 07:11:05: 43000000 INFO @ Sat, 03 Apr 2021 07:11:06: 33000000 INFO @ Sat, 03 Apr 2021 07:11:11: 31000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Sat, 03 Apr 2021 07:11:15: 44000000 INFO @ Sat, 03 Apr 2021 07:11:17: 34000000 INFO @ Sat, 03 Apr 2021 07:11:21: 32000000 INFO @ Sat, 03 Apr 2021 07:11:25: 45000000 INFO @ Sat, 03 Apr 2021 07:11:28: 35000000 INFO @ Sat, 03 Apr 2021 07:11:31: 33000000 INFO @ Sat, 03 Apr 2021 07:11:36: 46000000 INFO @ Sat, 03 Apr 2021 07:11:39: 36000000 INFO @ Sat, 03 Apr 2021 07:11:41: 34000000 INFO @ Sat, 03 Apr 2021 07:11:46: 47000000 INFO @ Sat, 03 Apr 2021 07:11:50: 37000000 INFO @ Sat, 03 Apr 2021 07:11:52: 35000000 INFO @ Sat, 03 Apr 2021 07:11:56: 48000000 INFO @ Sat, 03 Apr 2021 07:12:01: 38000000 INFO @ Sat, 03 Apr 2021 07:12:02: 36000000 INFO @ Sat, 03 Apr 2021 07:12:07: 49000000 INFO @ Sat, 03 Apr 2021 07:12:12: 37000000 INFO @ Sat, 03 Apr 2021 07:12:12: 39000000 INFO @ Sat, 03 Apr 2021 07:12:15: #1 tag size is determined as 50 bps INFO @ Sat, 03 Apr 2021 07:12:15: #1 tag size = 50 INFO @ Sat, 03 Apr 2021 07:12:15: #1 total tags in treatment: 22702155 INFO @ Sat, 03 Apr 2021 07:12:15: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 07:12:15: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 07:12:16: #1 tags after filtering in treatment: 15927728 INFO @ Sat, 03 Apr 2021 07:12:16: #1 Redundant rate of treatment: 0.30 INFO @ Sat, 03 Apr 2021 07:12:16: #1 finished! INFO @ Sat, 03 Apr 2021 07:12:16: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 07:12:16: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 07:12:17: #2 number of paired peaks: 581 WARNING @ Sat, 03 Apr 2021 07:12:17: Fewer paired peaks (581) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 581 pairs to build model! INFO @ Sat, 03 Apr 2021 07:12:17: start model_add_line... INFO @ Sat, 03 Apr 2021 07:12:17: start X-correlation... INFO @ Sat, 03 Apr 2021 07:12:17: end of X-cor INFO @ Sat, 03 Apr 2021 07:12:17: #2 finished! INFO @ Sat, 03 Apr 2021 07:12:17: #2 predicted fragment length is 61 bps INFO @ Sat, 03 Apr 2021 07:12:17: #2 alternative fragment length(s) may be 61 bps INFO @ Sat, 03 Apr 2021 07:12:17: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX4517989/SRX4517989.05_model.r WARNING @ Sat, 03 Apr 2021 07:12:17: #2 Since the d (61) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 07:12:17: #2 You may need to consider one of the other alternative d(s): 61 WARNING @ Sat, 03 Apr 2021 07:12:17: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 07:12:17: #3 Call peaks... INFO @ Sat, 03 Apr 2021 07:12:17: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 07:12:21: 38000000 INFO @ Sat, 03 Apr 2021 07:12:23: 40000000 INFO @ Sat, 03 Apr 2021 07:12:30: 39000000 INFO @ Sat, 03 Apr 2021 07:12:34: 41000000 INFO @ Sat, 03 Apr 2021 07:12:39: 40000000 INFO @ Sat, 03 Apr 2021 07:12:46: 42000000 INFO @ Sat, 03 Apr 2021 07:12:48: 41000000 BigWig に変換しました。 INFO @ Sat, 03 Apr 2021 07:12:57: 43000000 INFO @ Sat, 03 Apr 2021 07:12:57: 42000000 INFO @ Sat, 03 Apr 2021 07:13:05: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 07:13:06: 43000000 INFO @ Sat, 03 Apr 2021 07:13:08: 44000000 INFO @ Sat, 03 Apr 2021 07:13:15: 44000000 INFO @ Sat, 03 Apr 2021 07:13:19: 45000000 INFO @ Sat, 03 Apr 2021 07:13:24: 45000000 INFO @ Sat, 03 Apr 2021 07:13:30: 46000000 INFO @ Sat, 03 Apr 2021 07:13:30: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX4517989/SRX4517989.05_peaks.xls INFO @ Sat, 03 Apr 2021 07:13:31: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX4517989/SRX4517989.05_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 07:13:31: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX4517989/SRX4517989.05_summits.bed INFO @ Sat, 03 Apr 2021 07:13:31: Done! pass1 - making usageList (13 chroms): 6 millis pass2 - checking and writing primary data (10452 records, 4 fields): 59 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 07:13:33: 46000000 INFO @ Sat, 03 Apr 2021 07:13:41: 47000000 INFO @ Sat, 03 Apr 2021 07:13:42: 47000000 INFO @ Sat, 03 Apr 2021 07:13:51: 48000000 INFO @ Sat, 03 Apr 2021 07:13:52: 48000000 INFO @ Sat, 03 Apr 2021 07:14:00: 49000000 INFO @ Sat, 03 Apr 2021 07:14:02: 49000000 INFO @ Sat, 03 Apr 2021 07:14:07: #1 tag size is determined as 50 bps INFO @ Sat, 03 Apr 2021 07:14:07: #1 tag size = 50 INFO @ Sat, 03 Apr 2021 07:14:07: #1 total tags in treatment: 22702155 INFO @ Sat, 03 Apr 2021 07:14:07: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 07:14:07: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 07:14:08: #1 tags after filtering in treatment: 15927728 INFO @ Sat, 03 Apr 2021 07:14:08: #1 Redundant rate of treatment: 0.30 INFO @ Sat, 03 Apr 2021 07:14:08: #1 finished! INFO @ Sat, 03 Apr 2021 07:14:08: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 07:14:08: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 07:14:09: #2 number of paired peaks: 581 WARNING @ Sat, 03 Apr 2021 07:14:09: Fewer paired peaks (581) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 581 pairs to build model! INFO @ Sat, 03 Apr 2021 07:14:09: start model_add_line... INFO @ Sat, 03 Apr 2021 07:14:10: start X-correlation... INFO @ Sat, 03 Apr 2021 07:14:10: end of X-cor INFO @ Sat, 03 Apr 2021 07:14:10: #2 finished! INFO @ Sat, 03 Apr 2021 07:14:10: #2 predicted fragment length is 61 bps INFO @ Sat, 03 Apr 2021 07:14:10: #2 alternative fragment length(s) may be 61 bps INFO @ Sat, 03 Apr 2021 07:14:10: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX4517989/SRX4517989.20_model.r WARNING @ Sat, 03 Apr 2021 07:14:10: #2 Since the d (61) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 07:14:10: #2 You may need to consider one of the other alternative d(s): 61 WARNING @ Sat, 03 Apr 2021 07:14:10: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 07:14:10: #3 Call peaks... INFO @ Sat, 03 Apr 2021 07:14:10: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 07:14:11: #1 tag size is determined as 50 bps INFO @ Sat, 03 Apr 2021 07:14:11: #1 tag size = 50 INFO @ Sat, 03 Apr 2021 07:14:11: #1 total tags in treatment: 22702155 INFO @ Sat, 03 Apr 2021 07:14:11: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 07:14:11: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 07:14:11: #1 tags after filtering in treatment: 15927728 INFO @ Sat, 03 Apr 2021 07:14:11: #1 Redundant rate of treatment: 0.30 INFO @ Sat, 03 Apr 2021 07:14:11: #1 finished! INFO @ Sat, 03 Apr 2021 07:14:11: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 07:14:11: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 07:14:13: #2 number of paired peaks: 581 WARNING @ Sat, 03 Apr 2021 07:14:13: Fewer paired peaks (581) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 581 pairs to build model! INFO @ Sat, 03 Apr 2021 07:14:13: start model_add_line... INFO @ Sat, 03 Apr 2021 07:14:13: start X-correlation... INFO @ Sat, 03 Apr 2021 07:14:13: end of X-cor INFO @ Sat, 03 Apr 2021 07:14:13: #2 finished! INFO @ Sat, 03 Apr 2021 07:14:13: #2 predicted fragment length is 61 bps INFO @ Sat, 03 Apr 2021 07:14:13: #2 alternative fragment length(s) may be 61 bps INFO @ Sat, 03 Apr 2021 07:14:13: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX4517989/SRX4517989.10_model.r WARNING @ Sat, 03 Apr 2021 07:14:13: #2 Since the d (61) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 07:14:13: #2 You may need to consider one of the other alternative d(s): 61 WARNING @ Sat, 03 Apr 2021 07:14:13: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 07:14:13: #3 Call peaks... INFO @ Sat, 03 Apr 2021 07:14:13: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 07:14:53: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 07:14:59: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 07:15:16: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX4517989/SRX4517989.20_peaks.xls INFO @ Sat, 03 Apr 2021 07:15:17: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX4517989/SRX4517989.20_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 07:15:17: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX4517989/SRX4517989.20_summits.bed INFO @ Sat, 03 Apr 2021 07:15:17: Done! pass1 - making usageList (10 chroms): 1 millis pass2 - checking and writing primary data (438 records, 4 fields): 4 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 07:15:22: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX4517989/SRX4517989.10_peaks.xls INFO @ Sat, 03 Apr 2021 07:15:22: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX4517989/SRX4517989.10_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 07:15:22: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX4517989/SRX4517989.10_summits.bed INFO @ Sat, 03 Apr 2021 07:15:22: Done! pass1 - making usageList (13 chroms): 3 millis pass2 - checking and writing primary data (4043 records, 4 fields): 40 millis CompletedMACS2peakCalling