Job ID = 11158478 sra ファイルのダウンロード中... Completed: 2985320K bytes transferred in 358 seconds (68232K bits/sec), in 1 file. sra ファイルのダウンロードが完了しました。 Read layout: PAIRED fastq に変換中... Read 51473448 spots for /home/okishinya/chipatlas/results/dm3/SRX4279658/SRR7408144.sra Written 51473448 spots for /home/okishinya/chipatlas/results/dm3/SRX4279658/SRR7408144.sra rm: cannot remove `[DSE]RX*': そのようなファイルやディレクトリはありません rm: cannot remove `[DSE]RR*.fastq': そのようなファイルやディレクトリはありません fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:01 Multiseed full-index search: 05:38:19 51473448 reads; of these: 51473448 (100.00%) were paired; of these: 7377447 (14.33%) aligned concordantly 0 times 18782216 (36.49%) aligned concordantly exactly 1 time 25313785 (49.18%) aligned concordantly >1 times ---- 7377447 pairs aligned concordantly 0 times; of these: 240432 (3.26%) aligned discordantly 1 time ---- 7137015 pairs aligned 0 times concordantly or discordantly; of these: 14274030 mates make up the pairs; of these: 6392952 (44.79%) aligned 0 times 1669288 (11.69%) aligned exactly 1 time 6211790 (43.52%) aligned >1 times 93.79% overall alignment rate Time searching: 05:38:20 Overall time: 05:38:20 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 40 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 3327148 / 44106356 = 0.0754 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Tue, 04 Sep 2018 15:58:04: # Command line: callpeak -t SRX4279658.bam -f BAM -g dm -n SRX4279658.20 -q 1e-20 # ARGUMENTS LIST: # name = SRX4279658.20 # format = BAM # ChIP-seq file = ['SRX4279658.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 04 Sep 2018 15:58:04: # Command line: callpeak -t SRX4279658.bam -f BAM -g dm -n SRX4279658.05 -q 1e-05 # ARGUMENTS LIST: # name = SRX4279658.05 # format = BAM # ChIP-seq file = ['SRX4279658.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 04 Sep 2018 15:58:04: # Command line: callpeak -t SRX4279658.bam -f BAM -g dm -n SRX4279658.10 -q 1e-10 # ARGUMENTS LIST: # name = SRX4279658.10 # format = BAM # ChIP-seq file = ['SRX4279658.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 04 Sep 2018 15:58:04: #1 read tag files... INFO @ Tue, 04 Sep 2018 15:58:04: #1 read tag files... INFO @ Tue, 04 Sep 2018 15:58:04: #1 read tag files... INFO @ Tue, 04 Sep 2018 15:58:04: #1 read treatment tags... INFO @ Tue, 04 Sep 2018 15:58:04: #1 read treatment tags... INFO @ Tue, 04 Sep 2018 15:58:04: #1 read treatment tags... INFO @ Tue, 04 Sep 2018 15:58:10: 1000000 INFO @ Tue, 04 Sep 2018 15:58:10: 1000000 INFO @ Tue, 04 Sep 2018 15:58:10: 1000000 INFO @ Tue, 04 Sep 2018 15:58:16: 2000000 INFO @ Tue, 04 Sep 2018 15:58:16: 2000000 INFO @ Tue, 04 Sep 2018 15:58:16: 2000000 INFO @ Tue, 04 Sep 2018 15:58:22: 3000000 INFO @ Tue, 04 Sep 2018 15:58:22: 3000000 INFO @ Tue, 04 Sep 2018 15:58:22: 3000000 INFO @ Tue, 04 Sep 2018 15:58:28: 4000000 INFO @ Tue, 04 Sep 2018 15:58:28: 4000000 INFO @ Tue, 04 Sep 2018 15:58:29: 4000000 INFO @ Tue, 04 Sep 2018 15:58:34: 5000000 INFO @ Tue, 04 Sep 2018 15:58:35: 5000000 INFO @ Tue, 04 Sep 2018 15:58:35: 5000000 INFO @ Tue, 04 Sep 2018 15:58:40: 6000000 INFO @ Tue, 04 Sep 2018 15:58:41: 6000000 INFO @ Tue, 04 Sep 2018 15:58:42: 6000000 INFO @ Tue, 04 Sep 2018 15:58:46: 7000000 INFO @ Tue, 04 Sep 2018 15:58:47: 7000000 INFO @ Tue, 04 Sep 2018 15:58:48: 7000000 INFO @ Tue, 04 Sep 2018 15:58:52: 8000000 INFO @ Tue, 04 Sep 2018 15:58:54: 8000000 INFO @ Tue, 04 Sep 2018 15:58:55: 8000000 INFO @ Tue, 04 Sep 2018 15:58:57: 9000000 INFO @ Tue, 04 Sep 2018 15:59:00: 9000000 INFO @ Tue, 04 Sep 2018 15:59:02: 9000000 INFO @ Tue, 04 Sep 2018 15:59:03: 10000000 INFO @ Tue, 04 Sep 2018 15:59:07: 10000000 INFO @ Tue, 04 Sep 2018 15:59:08: 10000000 INFO @ Tue, 04 Sep 2018 15:59:09: 11000000 INFO @ Tue, 04 Sep 2018 15:59:14: 11000000 INFO @ Tue, 04 Sep 2018 15:59:15: 12000000 INFO @ Tue, 04 Sep 2018 15:59:15: 11000000 INFO @ Tue, 04 Sep 2018 15:59:20: 12000000 INFO @ Tue, 04 Sep 2018 15:59:21: 13000000 INFO @ Tue, 04 Sep 2018 15:59:22: 12000000 INFO @ Tue, 04 Sep 2018 15:59:27: 14000000 INFO @ Tue, 04 Sep 2018 15:59:27: 13000000 INFO @ Tue, 04 Sep 2018 15:59:29: 13000000 INFO @ Tue, 04 Sep 2018 15:59:33: 15000000 INFO @ Tue, 04 Sep 2018 15:59:34: 14000000 INFO @ Tue, 04 Sep 2018 15:59:35: 14000000 INFO @ Tue, 04 Sep 2018 15:59:38: 16000000 INFO @ Tue, 04 Sep 2018 15:59:40: 15000000 INFO @ Tue, 04 Sep 2018 15:59:42: 15000000 INFO @ Tue, 04 Sep 2018 15:59:44: 17000000 INFO @ Tue, 04 Sep 2018 15:59:47: 16000000 INFO @ Tue, 04 Sep 2018 15:59:49: 16000000 INFO @ Tue, 04 Sep 2018 15:59:50: 18000000 INFO @ Tue, 04 Sep 2018 15:59:54: 17000000 INFO @ Tue, 04 Sep 2018 15:59:56: 19000000 INFO @ Tue, 04 Sep 2018 15:59:56: 17000000 INFO @ Tue, 04 Sep 2018 16:00:00: 18000000 INFO @ Tue, 04 Sep 2018 16:00:02: 20000000 INFO @ Tue, 04 Sep 2018 16:00:03: 18000000 INFO @ Tue, 04 Sep 2018 16:00:07: 19000000 INFO @ Tue, 04 Sep 2018 16:00:07: 21000000 INFO @ Tue, 04 Sep 2018 16:00:09: 19000000 INFO @ Tue, 04 Sep 2018 16:00:13: 20000000 INFO @ Tue, 04 Sep 2018 16:00:13: 22000000 INFO @ Tue, 04 Sep 2018 16:00:16: 20000000 INFO @ Tue, 04 Sep 2018 16:00:19: 23000000 INFO @ Tue, 04 Sep 2018 16:00:20: 21000000 INFO @ Tue, 04 Sep 2018 16:00:22: 21000000 INFO @ Tue, 04 Sep 2018 16:00:25: 24000000 INFO @ Tue, 04 Sep 2018 16:00:26: 22000000 INFO @ Tue, 04 Sep 2018 16:00:29: 22000000 INFO @ Tue, 04 Sep 2018 16:00:31: 25000000 INFO @ Tue, 04 Sep 2018 16:00:33: 23000000 INFO @ Tue, 04 Sep 2018 16:00:36: 23000000 INFO @ Tue, 04 Sep 2018 16:00:37: 26000000 INFO @ Tue, 04 Sep 2018 16:00:39: 24000000 INFO @ Tue, 04 Sep 2018 16:00:42: 27000000 INFO @ Tue, 04 Sep 2018 16:00:43: 24000000 INFO @ Tue, 04 Sep 2018 16:00:46: 25000000 INFO @ Tue, 04 Sep 2018 16:00:48: 28000000 INFO @ Tue, 04 Sep 2018 16:00:49: 25000000 INFO @ Tue, 04 Sep 2018 16:00:52: 26000000 INFO @ Tue, 04 Sep 2018 16:00:54: 29000000 INFO @ Tue, 04 Sep 2018 16:00:56: 26000000 INFO @ Tue, 04 Sep 2018 16:00:59: 27000000 INFO @ Tue, 04 Sep 2018 16:01:00: 30000000 INFO @ Tue, 04 Sep 2018 16:01:02: 27000000 INFO @ Tue, 04 Sep 2018 16:01:05: 28000000 INFO @ Tue, 04 Sep 2018 16:01:06: 31000000 INFO @ Tue, 04 Sep 2018 16:01:09: 28000000 INFO @ Tue, 04 Sep 2018 16:01:11: 29000000 INFO @ Tue, 04 Sep 2018 16:01:12: 32000000 INFO @ Tue, 04 Sep 2018 16:01:15: 29000000 INFO @ Tue, 04 Sep 2018 16:01:17: 33000000 INFO @ Tue, 04 Sep 2018 16:01:18: 30000000 INFO @ Tue, 04 Sep 2018 16:01:22: 30000000 INFO @ Tue, 04 Sep 2018 16:01:23: 34000000 INFO @ Tue, 04 Sep 2018 16:01:24: 31000000 INFO @ Tue, 04 Sep 2018 16:01:28: 31000000 INFO @ Tue, 04 Sep 2018 16:01:29: 35000000 INFO @ Tue, 04 Sep 2018 16:01:30: 32000000 INFO @ Tue, 04 Sep 2018 16:01:34: 32000000 INFO @ Tue, 04 Sep 2018 16:01:35: 36000000 INFO @ Tue, 04 Sep 2018 16:01:37: 33000000 INFO @ Tue, 04 Sep 2018 16:01:41: 37000000 INFO @ Tue, 04 Sep 2018 16:01:41: 33000000 INFO @ Tue, 04 Sep 2018 16:01:43: 34000000 INFO @ Tue, 04 Sep 2018 16:01:47: 38000000 INFO @ Tue, 04 Sep 2018 16:01:47: 34000000 INFO @ Tue, 04 Sep 2018 16:01:49: 35000000 INFO @ Tue, 04 Sep 2018 16:01:53: 39000000 INFO @ Tue, 04 Sep 2018 16:01:54: 35000000 INFO @ Tue, 04 Sep 2018 16:01:56: 36000000 INFO @ Tue, 04 Sep 2018 16:01:59: 40000000 INFO @ Tue, 04 Sep 2018 16:02:01: 36000000 INFO @ Tue, 04 Sep 2018 16:02:02: 37000000 INFO @ Tue, 04 Sep 2018 16:02:04: 41000000 INFO @ Tue, 04 Sep 2018 16:02:07: 37000000 INFO @ Tue, 04 Sep 2018 16:02:09: 38000000 INFO @ Tue, 04 Sep 2018 16:02:10: 42000000 INFO @ Tue, 04 Sep 2018 16:02:14: 38000000 INFO @ Tue, 04 Sep 2018 16:02:15: 39000000 INFO @ Tue, 04 Sep 2018 16:02:16: 43000000 INFO @ Tue, 04 Sep 2018 16:02:20: 39000000 INFO @ Tue, 04 Sep 2018 16:02:21: 40000000 INFO @ Tue, 04 Sep 2018 16:02:22: 44000000 INFO @ Tue, 04 Sep 2018 16:02:27: 40000000 INFO @ Tue, 04 Sep 2018 16:02:28: 41000000 INFO @ Tue, 04 Sep 2018 16:02:28: 45000000 INFO @ Tue, 04 Sep 2018 16:02:33: 41000000 INFO @ Tue, 04 Sep 2018 16:02:34: 46000000 INFO @ Tue, 04 Sep 2018 16:02:34: 42000000 INFO @ Tue, 04 Sep 2018 16:02:40: 42000000 INFO @ Tue, 04 Sep 2018 16:02:40: 47000000 INFO @ Tue, 04 Sep 2018 16:02:40: 43000000 INFO @ Tue, 04 Sep 2018 16:02:46: 48000000 INFO @ Tue, 04 Sep 2018 16:02:46: 43000000 INFO @ Tue, 04 Sep 2018 16:02:47: 44000000 INFO @ Tue, 04 Sep 2018 16:02:52: 49000000 INFO @ Tue, 04 Sep 2018 16:02:53: 44000000 INFO @ Tue, 04 Sep 2018 16:02:53: 45000000 INFO @ Tue, 04 Sep 2018 16:02:58: 50000000 INFO @ Tue, 04 Sep 2018 16:02:59: 45000000 INFO @ Tue, 04 Sep 2018 16:02:59: 46000000 INFO @ Tue, 04 Sep 2018 16:03:04: 51000000 INFO @ Tue, 04 Sep 2018 16:03:06: 46000000 INFO @ Tue, 04 Sep 2018 16:03:06: 47000000 INFO @ Tue, 04 Sep 2018 16:03:09: 52000000 INFO @ Tue, 04 Sep 2018 16:03:12: 47000000 INFO @ Tue, 04 Sep 2018 16:03:12: 48000000 INFO @ Tue, 04 Sep 2018 16:03:15: 53000000 INFO @ Tue, 04 Sep 2018 16:03:19: 49000000 INFO @ Tue, 04 Sep 2018 16:03:19: 48000000 INFO @ Tue, 04 Sep 2018 16:03:21: 54000000 INFO @ Tue, 04 Sep 2018 16:03:25: 50000000 INFO @ Tue, 04 Sep 2018 16:03:25: 49000000 INFO @ Tue, 04 Sep 2018 16:03:27: 55000000 INFO @ Tue, 04 Sep 2018 16:03:31: 51000000 INFO @ Tue, 04 Sep 2018 16:03:32: 50000000 INFO @ Tue, 04 Sep 2018 16:03:33: 56000000 INFO @ Tue, 04 Sep 2018 16:03:38: 52000000 INFO @ Tue, 04 Sep 2018 16:03:38: 51000000 INFO @ Tue, 04 Sep 2018 16:03:39: 57000000 INFO @ Tue, 04 Sep 2018 16:03:44: 53000000 INFO @ Tue, 04 Sep 2018 16:03:45: 58000000 INFO @ Tue, 04 Sep 2018 16:03:45: 52000000 INFO @ Tue, 04 Sep 2018 16:03:50: 59000000 INFO @ Tue, 04 Sep 2018 16:03:50: 54000000 INFO @ Tue, 04 Sep 2018 16:03:51: 53000000 INFO @ Tue, 04 Sep 2018 16:03:56: 60000000 INFO @ Tue, 04 Sep 2018 16:03:57: 55000000 INFO @ Tue, 04 Sep 2018 16:03:58: 54000000 INFO @ Tue, 04 Sep 2018 16:04:02: 61000000 INFO @ Tue, 04 Sep 2018 16:04:03: 56000000 INFO @ Tue, 04 Sep 2018 16:04:04: 55000000 INFO @ Tue, 04 Sep 2018 16:04:08: 62000000 INFO @ Tue, 04 Sep 2018 16:04:09: 57000000 INFO @ Tue, 04 Sep 2018 16:04:11: 56000000 INFO @ Tue, 04 Sep 2018 16:04:14: 63000000 INFO @ Tue, 04 Sep 2018 16:04:16: 58000000 INFO @ Tue, 04 Sep 2018 16:04:17: 57000000 INFO @ Tue, 04 Sep 2018 16:04:20: 64000000 INFO @ Tue, 04 Sep 2018 16:04:22: 59000000 INFO @ Tue, 04 Sep 2018 16:04:24: 58000000 INFO @ Tue, 04 Sep 2018 16:04:26: 65000000 INFO @ Tue, 04 Sep 2018 16:04:29: 60000000 INFO @ Tue, 04 Sep 2018 16:04:30: 59000000 INFO @ Tue, 04 Sep 2018 16:04:31: 66000000 INFO @ Tue, 04 Sep 2018 16:04:35: 61000000 INFO @ Tue, 04 Sep 2018 16:04:37: 60000000 INFO @ Tue, 04 Sep 2018 16:04:37: 67000000 INFO @ Tue, 04 Sep 2018 16:04:41: 62000000 INFO @ Tue, 04 Sep 2018 16:04:43: 68000000 INFO @ Tue, 04 Sep 2018 16:04:43: 61000000 INFO @ Tue, 04 Sep 2018 16:04:48: 63000000 INFO @ Tue, 04 Sep 2018 16:04:49: 69000000 INFO @ Tue, 04 Sep 2018 16:04:50: 62000000 INFO @ Tue, 04 Sep 2018 16:04:54: 64000000 INFO @ Tue, 04 Sep 2018 16:04:55: 70000000 INFO @ Tue, 04 Sep 2018 16:04:56: 63000000 INFO @ Tue, 04 Sep 2018 16:05:00: 65000000 INFO @ Tue, 04 Sep 2018 16:05:01: 71000000 INFO @ Tue, 04 Sep 2018 16:05:03: 64000000 INFO @ Tue, 04 Sep 2018 16:05:06: 72000000 INFO @ Tue, 04 Sep 2018 16:05:07: 66000000 INFO @ Tue, 04 Sep 2018 16:05:09: 65000000 INFO @ Tue, 04 Sep 2018 16:05:12: 73000000 INFO @ Tue, 04 Sep 2018 16:05:13: 67000000 INFO @ Tue, 04 Sep 2018 16:05:16: 66000000 INFO @ Tue, 04 Sep 2018 16:05:18: 74000000 INFO @ Tue, 04 Sep 2018 16:05:19: 68000000 INFO @ Tue, 04 Sep 2018 16:05:22: 67000000 INFO @ Tue, 04 Sep 2018 16:05:24: 75000000 INFO @ Tue, 04 Sep 2018 16:05:26: 69000000 INFO @ Tue, 04 Sep 2018 16:05:29: 68000000 INFO @ Tue, 04 Sep 2018 16:05:30: 76000000 INFO @ Tue, 04 Sep 2018 16:05:32: 70000000 INFO @ Tue, 04 Sep 2018 16:05:35: 69000000 INFO @ Tue, 04 Sep 2018 16:05:36: 77000000 INFO @ Tue, 04 Sep 2018 16:05:38: 71000000 INFO @ Tue, 04 Sep 2018 16:05:42: 70000000 INFO @ Tue, 04 Sep 2018 16:05:42: 78000000 INFO @ Tue, 04 Sep 2018 16:05:45: 72000000 INFO @ Tue, 04 Sep 2018 16:05:48: 79000000 INFO @ Tue, 04 Sep 2018 16:05:48: 71000000 INFO @ Tue, 04 Sep 2018 16:05:51: 73000000 INFO @ Tue, 04 Sep 2018 16:05:54: 80000000 INFO @ Tue, 04 Sep 2018 16:05:55: 72000000 INFO @ Tue, 04 Sep 2018 16:05:57: 74000000 INFO @ Tue, 04 Sep 2018 16:05:59: 81000000 INFO @ Tue, 04 Sep 2018 16:06:01: 73000000 INFO @ Tue, 04 Sep 2018 16:06:04: 75000000 INFO @ Tue, 04 Sep 2018 16:06:05: 82000000 INFO @ Tue, 04 Sep 2018 16:06:08: 74000000 INFO @ Tue, 04 Sep 2018 16:06:10: 76000000 INFO @ Tue, 04 Sep 2018 16:06:11: 83000000 INFO @ Tue, 04 Sep 2018 16:06:14: 75000000 INFO @ Tue, 04 Sep 2018 16:06:17: 77000000 INFO @ Tue, 04 Sep 2018 16:06:17: 84000000 INFO @ Tue, 04 Sep 2018 16:06:21: 76000000 INFO @ Tue, 04 Sep 2018 16:06:23: 85000000 INFO @ Tue, 04 Sep 2018 16:06:23: 78000000 INFO @ Tue, 04 Sep 2018 16:06:27: 77000000 INFO @ Tue, 04 Sep 2018 16:06:29: 86000000 INFO @ Tue, 04 Sep 2018 16:06:29: 79000000 INFO @ Tue, 04 Sep 2018 16:06:34: 78000000 INFO @ Tue, 04 Sep 2018 16:06:35: 87000000 INFO @ Tue, 04 Sep 2018 16:06:36: 80000000 INFO @ Tue, 04 Sep 2018 16:06:40: 79000000 INFO @ Tue, 04 Sep 2018 16:06:40: 88000000 INFO @ Tue, 04 Sep 2018 16:06:42: 81000000 INFO @ Tue, 04 Sep 2018 16:06:46: 89000000 INFO @ Tue, 04 Sep 2018 16:06:47: 80000000 INFO @ Tue, 04 Sep 2018 16:06:49: 82000000 INFO @ Tue, 04 Sep 2018 16:06:52: #1 tag size is determined as 78 bps INFO @ Tue, 04 Sep 2018 16:06:52: #1 tag size = 78 INFO @ Tue, 04 Sep 2018 16:06:52: #1 total tags in treatment: 40770804 INFO @ Tue, 04 Sep 2018 16:06:52: #1 user defined the maximum tags... INFO @ Tue, 04 Sep 2018 16:06:52: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 04 Sep 2018 16:06:53: 81000000 INFO @ Tue, 04 Sep 2018 16:06:53: #1 tags after filtering in treatment: 25032546 INFO @ Tue, 04 Sep 2018 16:06:53: #1 Redundant rate of treatment: 0.39 INFO @ Tue, 04 Sep 2018 16:06:53: #1 finished! INFO @ Tue, 04 Sep 2018 16:06:53: #2 Build Peak Model... INFO @ Tue, 04 Sep 2018 16:06:53: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 04 Sep 2018 16:06:55: 83000000 INFO @ Tue, 04 Sep 2018 16:06:56: #2 number of paired peaks: 5331 INFO @ Tue, 04 Sep 2018 16:06:56: start model_add_line... INFO @ Tue, 04 Sep 2018 16:06:56: start X-correlation... INFO @ Tue, 04 Sep 2018 16:06:56: end of X-cor INFO @ Tue, 04 Sep 2018 16:06:56: #2 finished! INFO @ Tue, 04 Sep 2018 16:06:56: #2 predicted fragment length is 166 bps INFO @ Tue, 04 Sep 2018 16:06:56: #2 alternative fragment length(s) may be 166 bps INFO @ Tue, 04 Sep 2018 16:06:56: #2.2 Generate R script for model : SRX4279658.10_model.r INFO @ Tue, 04 Sep 2018 16:06:56: #3 Call peaks... INFO @ Tue, 04 Sep 2018 16:06:56: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 04 Sep 2018 16:07:00: 82000000 INFO @ Tue, 04 Sep 2018 16:07:01: 84000000 INFO @ Tue, 04 Sep 2018 16:07:06: 83000000 INFO @ Tue, 04 Sep 2018 16:07:08: 85000000 INFO @ Tue, 04 Sep 2018 16:07:13: 84000000 INFO @ Tue, 04 Sep 2018 16:07:14: 86000000 INFO @ Tue, 04 Sep 2018 16:07:19: 85000000 INFO @ Tue, 04 Sep 2018 16:07:20: 87000000 INFO @ Tue, 04 Sep 2018 16:07:25: 86000000 INFO @ Tue, 04 Sep 2018 16:07:27: 88000000 INFO @ Tue, 04 Sep 2018 16:07:32: 87000000 INFO @ Tue, 04 Sep 2018 16:07:33: 89000000 INFO @ Tue, 04 Sep 2018 16:07:38: 88000000 INFO @ Tue, 04 Sep 2018 16:07:39: #1 tag size is determined as 78 bps INFO @ Tue, 04 Sep 2018 16:07:39: #1 tag size = 78 INFO @ Tue, 04 Sep 2018 16:07:39: #1 total tags in treatment: 40770804 INFO @ Tue, 04 Sep 2018 16:07:39: #1 user defined the maximum tags... INFO @ Tue, 04 Sep 2018 16:07:39: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 04 Sep 2018 16:07:40: #1 tags after filtering in treatment: 25032546 INFO @ Tue, 04 Sep 2018 16:07:40: #1 Redundant rate of treatment: 0.39 INFO @ Tue, 04 Sep 2018 16:07:40: #1 finished! INFO @ Tue, 04 Sep 2018 16:07:40: #2 Build Peak Model... INFO @ Tue, 04 Sep 2018 16:07:40: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 04 Sep 2018 16:07:43: #2 number of paired peaks: 5331 INFO @ Tue, 04 Sep 2018 16:07:43: start model_add_line... INFO @ Tue, 04 Sep 2018 16:07:43: start X-correlation... INFO @ Tue, 04 Sep 2018 16:07:43: end of X-cor INFO @ Tue, 04 Sep 2018 16:07:43: #2 finished! INFO @ Tue, 04 Sep 2018 16:07:43: #2 predicted fragment length is 166 bps INFO @ Tue, 04 Sep 2018 16:07:43: #2 alternative fragment length(s) may be 166 bps INFO @ Tue, 04 Sep 2018 16:07:43: #2.2 Generate R script for model : SRX4279658.20_model.r INFO @ Tue, 04 Sep 2018 16:07:43: #3 Call peaks... INFO @ Tue, 04 Sep 2018 16:07:43: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 04 Sep 2018 16:07:44: 89000000 INFO @ Tue, 04 Sep 2018 16:07:50: #1 tag size is determined as 78 bps INFO @ Tue, 04 Sep 2018 16:07:50: #1 tag size = 78 INFO @ Tue, 04 Sep 2018 16:07:50: #1 total tags in treatment: 40770804 INFO @ Tue, 04 Sep 2018 16:07:50: #1 user defined the maximum tags... INFO @ Tue, 04 Sep 2018 16:07:50: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 04 Sep 2018 16:07:51: #1 tags after filtering in treatment: 25032546 INFO @ Tue, 04 Sep 2018 16:07:51: #1 Redundant rate of treatment: 0.39 INFO @ Tue, 04 Sep 2018 16:07:51: #1 finished! INFO @ Tue, 04 Sep 2018 16:07:51: #2 Build Peak Model... INFO @ Tue, 04 Sep 2018 16:07:51: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 04 Sep 2018 16:07:53: #2 number of paired peaks: 5331 INFO @ Tue, 04 Sep 2018 16:07:53: start model_add_line... INFO @ Tue, 04 Sep 2018 16:07:54: start X-correlation... INFO @ Tue, 04 Sep 2018 16:07:54: end of X-cor INFO @ Tue, 04 Sep 2018 16:07:54: #2 finished! INFO @ Tue, 04 Sep 2018 16:07:54: #2 predicted fragment length is 166 bps INFO @ Tue, 04 Sep 2018 16:07:54: #2 alternative fragment length(s) may be 166 bps INFO @ Tue, 04 Sep 2018 16:07:54: #2.2 Generate R script for model : SRX4279658.05_model.r INFO @ Tue, 04 Sep 2018 16:07:54: #3 Call peaks... INFO @ Tue, 04 Sep 2018 16:07:54: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 04 Sep 2018 16:08:11: #3 Call peaks for each chromosome... INFO @ Tue, 04 Sep 2018 16:08:48: #4 Write output xls file... SRX4279658.10_peaks.xls INFO @ Tue, 04 Sep 2018 16:08:48: #4 Write peak in narrowPeak format file... SRX4279658.10_peaks.narrowPeak INFO @ Tue, 04 Sep 2018 16:08:48: #4 Write summits bed file... SRX4279658.10_summits.bed INFO @ Tue, 04 Sep 2018 16:08:48: Done! pass1 - making usageList (14 chroms): 5 millis pass2 - checking and writing primary data (21695 records, 4 fields): 29 millis CompletedMACS2peakCalling INFO @ Tue, 04 Sep 2018 16:08:56: #3 Call peaks for each chromosome... INFO @ Tue, 04 Sep 2018 16:09:06: #3 Call peaks for each chromosome... INFO @ Tue, 04 Sep 2018 16:09:26: #4 Write output xls file... SRX4279658.20_peaks.xls INFO @ Tue, 04 Sep 2018 16:09:26: #4 Write peak in narrowPeak format file... SRX4279658.20_peaks.narrowPeak INFO @ Tue, 04 Sep 2018 16:09:26: #4 Write summits bed file... SRX4279658.20_summits.bed INFO @ Tue, 04 Sep 2018 16:09:27: Done! pass1 - making usageList (14 chroms): 3 millis pass2 - checking and writing primary data (14837 records, 4 fields): 19 millis CompletedMACS2peakCalling INFO @ Tue, 04 Sep 2018 16:09:39: #4 Write output xls file... SRX4279658.05_peaks.xls INFO @ Tue, 04 Sep 2018 16:09:40: #4 Write peak in narrowPeak format file... SRX4279658.05_peaks.narrowPeak INFO @ Tue, 04 Sep 2018 16:09:40: #4 Write summits bed file... SRX4279658.05_summits.bed INFO @ Tue, 04 Sep 2018 16:09:40: Done! pass1 - making usageList (14 chroms): 7 millis pass2 - checking and writing primary data (27968 records, 4 fields): 33 millis CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。