Job ID = 11158474 sra ファイルのダウンロード中... Completed: 3248736K bytes transferred in 48 seconds (548580K bits/sec), in 1 file. sra ファイルのダウンロードが完了しました。 Read layout: PAIRED fastq に変換中... Read 56097647 spots for /home/okishinya/chipatlas/results/dm3/SRX4279649/SRR7408153.sra Written 56097647 spots for /home/okishinya/chipatlas/results/dm3/SRX4279649/SRR7408153.sra rm: cannot remove `[DSE]RX*': そのようなファイルやディレクトリはありません rm: cannot remove `[DSE]RR*.fastq': そのようなファイルやディレクトリはありません fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 06:33:47 56097647 reads; of these: 56097647 (100.00%) were paired; of these: 7053602 (12.57%) aligned concordantly 0 times 20608568 (36.74%) aligned concordantly exactly 1 time 28435477 (50.69%) aligned concordantly >1 times ---- 7053602 pairs aligned concordantly 0 times; of these: 293856 (4.17%) aligned discordantly 1 time ---- 6759746 pairs aligned 0 times concordantly or discordantly; of these: 13519492 mates make up the pairs; of these: 5724529 (42.34%) aligned 0 times 1710672 (12.65%) aligned exactly 1 time 6084291 (45.00%) aligned >1 times 94.90% overall alignment rate Time searching: 06:33:47 Overall time: 06:33:47 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 44 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 3953045 / 49103447 = 0.0805 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Tue, 04 Sep 2018 16:49:00: # Command line: callpeak -t SRX4279649.bam -f BAM -g dm -n SRX4279649.10 -q 1e-10 # ARGUMENTS LIST: # name = SRX4279649.10 # format = BAM # ChIP-seq file = ['SRX4279649.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 04 Sep 2018 16:49:00: # Command line: callpeak -t SRX4279649.bam -f BAM -g dm -n SRX4279649.05 -q 1e-05 # ARGUMENTS LIST: # name = SRX4279649.05 # format = BAM # ChIP-seq file = ['SRX4279649.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 04 Sep 2018 16:49:00: # Command line: callpeak -t SRX4279649.bam -f BAM -g dm -n SRX4279649.20 -q 1e-20 # ARGUMENTS LIST: # name = SRX4279649.20 # format = BAM # ChIP-seq file = ['SRX4279649.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 04 Sep 2018 16:49:00: #1 read tag files... INFO @ Tue, 04 Sep 2018 16:49:00: #1 read tag files... INFO @ Tue, 04 Sep 2018 16:49:00: #1 read tag files... INFO @ Tue, 04 Sep 2018 16:49:00: #1 read treatment tags... INFO @ Tue, 04 Sep 2018 16:49:00: #1 read treatment tags... INFO @ Tue, 04 Sep 2018 16:49:00: #1 read treatment tags... INFO @ Tue, 04 Sep 2018 16:49:06: 1000000 INFO @ Tue, 04 Sep 2018 16:49:06: 1000000 INFO @ Tue, 04 Sep 2018 16:49:06: 1000000 INFO @ Tue, 04 Sep 2018 16:49:11: 2000000 INFO @ Tue, 04 Sep 2018 16:49:12: 2000000 INFO @ Tue, 04 Sep 2018 16:49:12: 2000000 INFO @ Tue, 04 Sep 2018 16:49:17: 3000000 INFO @ Tue, 04 Sep 2018 16:49:18: 3000000 INFO @ Tue, 04 Sep 2018 16:49:18: 3000000 INFO @ Tue, 04 Sep 2018 16:49:24: 4000000 INFO @ Tue, 04 Sep 2018 16:49:24: 4000000 INFO @ Tue, 04 Sep 2018 16:49:24: 4000000 INFO @ Tue, 04 Sep 2018 16:49:29: 5000000 INFO @ Tue, 04 Sep 2018 16:49:30: 5000000 INFO @ Tue, 04 Sep 2018 16:49:30: 5000000 INFO @ Tue, 04 Sep 2018 16:49:35: 6000000 INFO @ Tue, 04 Sep 2018 16:49:36: 6000000 INFO @ Tue, 04 Sep 2018 16:49:36: 6000000 INFO @ Tue, 04 Sep 2018 16:49:41: 7000000 INFO @ Tue, 04 Sep 2018 16:49:42: 7000000 INFO @ Tue, 04 Sep 2018 16:49:43: 7000000 INFO @ Tue, 04 Sep 2018 16:49:47: 8000000 INFO @ Tue, 04 Sep 2018 16:49:48: 8000000 INFO @ Tue, 04 Sep 2018 16:49:49: 8000000 INFO @ Tue, 04 Sep 2018 16:49:53: 9000000 INFO @ Tue, 04 Sep 2018 16:49:54: 9000000 INFO @ Tue, 04 Sep 2018 16:49:55: 9000000 INFO @ Tue, 04 Sep 2018 16:49:58: 10000000 INFO @ Tue, 04 Sep 2018 16:50:00: 10000000 INFO @ Tue, 04 Sep 2018 16:50:02: 10000000 INFO @ Tue, 04 Sep 2018 16:50:04: 11000000 INFO @ Tue, 04 Sep 2018 16:50:06: 11000000 INFO @ Tue, 04 Sep 2018 16:50:08: 11000000 INFO @ Tue, 04 Sep 2018 16:50:10: 12000000 INFO @ Tue, 04 Sep 2018 16:50:12: 12000000 INFO @ Tue, 04 Sep 2018 16:50:14: 12000000 INFO @ Tue, 04 Sep 2018 16:50:16: 13000000 INFO @ Tue, 04 Sep 2018 16:50:18: 13000000 INFO @ Tue, 04 Sep 2018 16:50:21: 13000000 INFO @ Tue, 04 Sep 2018 16:50:21: 14000000 INFO @ Tue, 04 Sep 2018 16:50:24: 14000000 INFO @ Tue, 04 Sep 2018 16:50:27: 15000000 INFO @ Tue, 04 Sep 2018 16:50:27: 14000000 INFO @ Tue, 04 Sep 2018 16:50:30: 15000000 INFO @ Tue, 04 Sep 2018 16:50:33: 16000000 INFO @ Tue, 04 Sep 2018 16:50:34: 15000000 INFO @ Tue, 04 Sep 2018 16:50:37: 16000000 INFO @ Tue, 04 Sep 2018 16:50:39: 17000000 INFO @ Tue, 04 Sep 2018 16:50:40: 16000000 INFO @ Tue, 04 Sep 2018 16:50:43: 17000000 INFO @ Tue, 04 Sep 2018 16:50:45: 18000000 INFO @ Tue, 04 Sep 2018 16:50:46: 17000000 INFO @ Tue, 04 Sep 2018 16:50:49: 18000000 INFO @ Tue, 04 Sep 2018 16:50:50: 19000000 INFO @ Tue, 04 Sep 2018 16:50:53: 18000000 INFO @ Tue, 04 Sep 2018 16:50:55: 19000000 INFO @ Tue, 04 Sep 2018 16:50:56: 20000000 INFO @ Tue, 04 Sep 2018 16:50:59: 19000000 INFO @ Tue, 04 Sep 2018 16:51:01: 20000000 INFO @ Tue, 04 Sep 2018 16:51:02: 21000000 INFO @ Tue, 04 Sep 2018 16:51:06: 20000000 INFO @ Tue, 04 Sep 2018 16:51:07: 21000000 INFO @ Tue, 04 Sep 2018 16:51:08: 22000000 INFO @ Tue, 04 Sep 2018 16:51:12: 21000000 INFO @ Tue, 04 Sep 2018 16:51:13: 22000000 INFO @ Tue, 04 Sep 2018 16:51:13: 23000000 INFO @ Tue, 04 Sep 2018 16:51:19: 22000000 INFO @ Tue, 04 Sep 2018 16:51:19: 24000000 INFO @ Tue, 04 Sep 2018 16:51:20: 23000000 INFO @ Tue, 04 Sep 2018 16:51:25: 23000000 INFO @ Tue, 04 Sep 2018 16:51:25: 25000000 INFO @ Tue, 04 Sep 2018 16:51:26: 24000000 INFO @ Tue, 04 Sep 2018 16:51:31: 24000000 INFO @ Tue, 04 Sep 2018 16:51:31: 26000000 INFO @ Tue, 04 Sep 2018 16:51:32: 25000000 INFO @ Tue, 04 Sep 2018 16:51:37: 25000000 INFO @ Tue, 04 Sep 2018 16:51:37: 27000000 INFO @ Tue, 04 Sep 2018 16:51:38: 26000000 INFO @ Tue, 04 Sep 2018 16:51:42: 26000000 INFO @ Tue, 04 Sep 2018 16:51:43: 28000000 INFO @ Tue, 04 Sep 2018 16:51:44: 27000000 INFO @ Tue, 04 Sep 2018 16:51:48: 27000000 INFO @ Tue, 04 Sep 2018 16:51:49: 29000000 INFO @ Tue, 04 Sep 2018 16:51:50: 28000000 INFO @ Tue, 04 Sep 2018 16:51:54: 28000000 INFO @ Tue, 04 Sep 2018 16:51:55: 30000000 INFO @ Tue, 04 Sep 2018 16:51:56: 29000000 INFO @ Tue, 04 Sep 2018 16:51:59: 29000000 INFO @ Tue, 04 Sep 2018 16:52:01: 31000000 INFO @ Tue, 04 Sep 2018 16:52:02: 30000000 INFO @ Tue, 04 Sep 2018 16:52:05: 30000000 INFO @ Tue, 04 Sep 2018 16:52:07: 32000000 INFO @ Tue, 04 Sep 2018 16:52:08: 31000000 INFO @ Tue, 04 Sep 2018 16:52:11: 31000000 INFO @ Tue, 04 Sep 2018 16:52:13: 33000000 INFO @ Tue, 04 Sep 2018 16:52:15: 32000000 INFO @ Tue, 04 Sep 2018 16:52:16: 32000000 INFO @ Tue, 04 Sep 2018 16:52:19: 34000000 INFO @ Tue, 04 Sep 2018 16:52:21: 33000000 INFO @ Tue, 04 Sep 2018 16:52:22: 33000000 INFO @ Tue, 04 Sep 2018 16:52:26: 35000000 INFO @ Tue, 04 Sep 2018 16:52:27: 34000000 INFO @ Tue, 04 Sep 2018 16:52:28: 34000000 INFO @ Tue, 04 Sep 2018 16:52:32: 36000000 INFO @ Tue, 04 Sep 2018 16:52:33: 35000000 INFO @ Tue, 04 Sep 2018 16:52:33: 35000000 INFO @ Tue, 04 Sep 2018 16:52:38: 37000000 INFO @ Tue, 04 Sep 2018 16:52:39: 36000000 INFO @ Tue, 04 Sep 2018 16:52:39: 36000000 INFO @ Tue, 04 Sep 2018 16:52:44: 38000000 INFO @ Tue, 04 Sep 2018 16:52:45: 37000000 INFO @ Tue, 04 Sep 2018 16:52:45: 37000000 INFO @ Tue, 04 Sep 2018 16:52:50: 39000000 INFO @ Tue, 04 Sep 2018 16:52:51: 38000000 INFO @ Tue, 04 Sep 2018 16:52:51: 38000000 INFO @ Tue, 04 Sep 2018 16:52:56: 40000000 INFO @ Tue, 04 Sep 2018 16:52:56: 39000000 INFO @ Tue, 04 Sep 2018 16:52:57: 39000000 INFO @ Tue, 04 Sep 2018 16:53:02: 40000000 INFO @ Tue, 04 Sep 2018 16:53:02: 41000000 INFO @ Tue, 04 Sep 2018 16:53:03: 40000000 INFO @ Tue, 04 Sep 2018 16:53:08: 41000000 INFO @ Tue, 04 Sep 2018 16:53:08: 42000000 INFO @ Tue, 04 Sep 2018 16:53:10: 41000000 INFO @ Tue, 04 Sep 2018 16:53:13: 42000000 INFO @ Tue, 04 Sep 2018 16:53:14: 43000000 INFO @ Tue, 04 Sep 2018 16:53:16: 42000000 INFO @ Tue, 04 Sep 2018 16:53:19: 43000000 INFO @ Tue, 04 Sep 2018 16:53:20: 44000000 INFO @ Tue, 04 Sep 2018 16:53:22: 43000000 INFO @ Tue, 04 Sep 2018 16:53:25: 44000000 INFO @ Tue, 04 Sep 2018 16:53:26: 45000000 INFO @ Tue, 04 Sep 2018 16:53:28: 44000000 INFO @ Tue, 04 Sep 2018 16:53:30: 45000000 INFO @ Tue, 04 Sep 2018 16:53:32: 46000000 INFO @ Tue, 04 Sep 2018 16:53:34: 45000000 INFO @ Tue, 04 Sep 2018 16:53:36: 46000000 INFO @ Tue, 04 Sep 2018 16:53:39: 47000000 INFO @ Tue, 04 Sep 2018 16:53:40: 46000000 INFO @ Tue, 04 Sep 2018 16:53:42: 47000000 INFO @ Tue, 04 Sep 2018 16:53:45: 48000000 INFO @ Tue, 04 Sep 2018 16:53:46: 47000000 INFO @ Tue, 04 Sep 2018 16:53:47: 48000000 INFO @ Tue, 04 Sep 2018 16:53:51: 49000000 INFO @ Tue, 04 Sep 2018 16:53:52: 48000000 INFO @ Tue, 04 Sep 2018 16:53:53: 49000000 INFO @ Tue, 04 Sep 2018 16:53:57: 50000000 INFO @ Tue, 04 Sep 2018 16:53:58: 49000000 INFO @ Tue, 04 Sep 2018 16:53:59: 50000000 INFO @ Tue, 04 Sep 2018 16:54:03: 51000000 INFO @ Tue, 04 Sep 2018 16:54:05: 50000000 INFO @ Tue, 04 Sep 2018 16:54:05: 51000000 INFO @ Tue, 04 Sep 2018 16:54:09: 52000000 INFO @ Tue, 04 Sep 2018 16:54:10: 52000000 INFO @ Tue, 04 Sep 2018 16:54:11: 51000000 INFO @ Tue, 04 Sep 2018 16:54:16: 53000000 INFO @ Tue, 04 Sep 2018 16:54:16: 53000000 INFO @ Tue, 04 Sep 2018 16:54:17: 52000000 INFO @ Tue, 04 Sep 2018 16:54:22: 54000000 INFO @ Tue, 04 Sep 2018 16:54:22: 54000000 INFO @ Tue, 04 Sep 2018 16:54:23: 53000000 INFO @ Tue, 04 Sep 2018 16:54:28: 55000000 INFO @ Tue, 04 Sep 2018 16:54:28: 55000000 INFO @ Tue, 04 Sep 2018 16:54:29: 54000000 INFO @ Tue, 04 Sep 2018 16:54:34: 56000000 INFO @ Tue, 04 Sep 2018 16:54:34: 56000000 INFO @ Tue, 04 Sep 2018 16:54:35: 55000000 INFO @ Tue, 04 Sep 2018 16:54:39: 57000000 INFO @ Tue, 04 Sep 2018 16:54:40: 57000000 INFO @ Tue, 04 Sep 2018 16:54:41: 56000000 INFO @ Tue, 04 Sep 2018 16:54:45: 58000000 INFO @ Tue, 04 Sep 2018 16:54:46: 58000000 INFO @ Tue, 04 Sep 2018 16:54:47: 57000000 INFO @ Tue, 04 Sep 2018 16:54:51: 59000000 INFO @ Tue, 04 Sep 2018 16:54:53: 59000000 INFO @ Tue, 04 Sep 2018 16:54:54: 58000000 INFO @ Tue, 04 Sep 2018 16:54:57: 60000000 INFO @ Tue, 04 Sep 2018 16:54:59: 60000000 INFO @ Tue, 04 Sep 2018 16:55:00: 59000000 INFO @ Tue, 04 Sep 2018 16:55:02: 61000000 INFO @ Tue, 04 Sep 2018 16:55:05: 61000000 INFO @ Tue, 04 Sep 2018 16:55:06: 60000000 INFO @ Tue, 04 Sep 2018 16:55:08: 62000000 INFO @ Tue, 04 Sep 2018 16:55:11: 62000000 INFO @ Tue, 04 Sep 2018 16:55:12: 61000000 INFO @ Tue, 04 Sep 2018 16:55:14: 63000000 INFO @ Tue, 04 Sep 2018 16:55:17: 63000000 INFO @ Tue, 04 Sep 2018 16:55:18: 62000000 INFO @ Tue, 04 Sep 2018 16:55:19: 64000000 INFO @ Tue, 04 Sep 2018 16:55:23: 64000000 INFO @ Tue, 04 Sep 2018 16:55:25: 63000000 INFO @ Tue, 04 Sep 2018 16:55:25: 65000000 INFO @ Tue, 04 Sep 2018 16:55:29: 65000000 INFO @ Tue, 04 Sep 2018 16:55:31: 64000000 INFO @ Tue, 04 Sep 2018 16:55:31: 66000000 INFO @ Tue, 04 Sep 2018 16:55:35: 66000000 INFO @ Tue, 04 Sep 2018 16:55:36: 67000000 INFO @ Tue, 04 Sep 2018 16:55:37: 65000000 INFO @ Tue, 04 Sep 2018 16:55:41: 67000000 INFO @ Tue, 04 Sep 2018 16:55:42: 68000000 INFO @ Tue, 04 Sep 2018 16:55:43: 66000000 INFO @ Tue, 04 Sep 2018 16:55:47: 68000000 INFO @ Tue, 04 Sep 2018 16:55:48: 69000000 INFO @ Tue, 04 Sep 2018 16:55:49: 67000000 INFO @ Tue, 04 Sep 2018 16:55:53: 70000000 INFO @ Tue, 04 Sep 2018 16:55:54: 69000000 INFO @ Tue, 04 Sep 2018 16:55:55: 68000000 INFO @ Tue, 04 Sep 2018 16:55:59: 71000000 INFO @ Tue, 04 Sep 2018 16:56:00: 70000000 INFO @ Tue, 04 Sep 2018 16:56:01: 69000000 INFO @ Tue, 04 Sep 2018 16:56:05: 72000000 INFO @ Tue, 04 Sep 2018 16:56:06: 71000000 INFO @ Tue, 04 Sep 2018 16:56:07: 70000000 INFO @ Tue, 04 Sep 2018 16:56:10: 73000000 INFO @ Tue, 04 Sep 2018 16:56:12: 72000000 INFO @ Tue, 04 Sep 2018 16:56:13: 71000000 INFO @ Tue, 04 Sep 2018 16:56:16: 74000000 INFO @ Tue, 04 Sep 2018 16:56:18: 73000000 INFO @ Tue, 04 Sep 2018 16:56:20: 72000000 INFO @ Tue, 04 Sep 2018 16:56:21: 75000000 INFO @ Tue, 04 Sep 2018 16:56:24: 74000000 INFO @ Tue, 04 Sep 2018 16:56:26: 73000000 INFO @ Tue, 04 Sep 2018 16:56:27: 76000000 INFO @ Tue, 04 Sep 2018 16:56:30: 75000000 INFO @ Tue, 04 Sep 2018 16:56:32: 74000000 INFO @ Tue, 04 Sep 2018 16:56:33: 77000000 INFO @ Tue, 04 Sep 2018 16:56:36: 76000000 INFO @ Tue, 04 Sep 2018 16:56:38: 75000000 INFO @ Tue, 04 Sep 2018 16:56:38: 78000000 INFO @ Tue, 04 Sep 2018 16:56:42: 77000000 INFO @ Tue, 04 Sep 2018 16:56:44: 76000000 INFO @ Tue, 04 Sep 2018 16:56:44: 79000000 INFO @ Tue, 04 Sep 2018 16:56:48: 78000000 INFO @ Tue, 04 Sep 2018 16:56:50: 80000000 INFO @ Tue, 04 Sep 2018 16:56:50: 77000000 INFO @ Tue, 04 Sep 2018 16:56:54: 79000000 INFO @ Tue, 04 Sep 2018 16:56:55: 81000000 INFO @ Tue, 04 Sep 2018 16:56:56: 78000000 INFO @ Tue, 04 Sep 2018 16:57:01: 80000000 INFO @ Tue, 04 Sep 2018 16:57:01: 82000000 INFO @ Tue, 04 Sep 2018 16:57:02: 79000000 INFO @ Tue, 04 Sep 2018 16:57:07: 81000000 INFO @ Tue, 04 Sep 2018 16:57:07: 83000000 INFO @ Tue, 04 Sep 2018 16:57:08: 80000000 INFO @ Tue, 04 Sep 2018 16:57:12: 84000000 INFO @ Tue, 04 Sep 2018 16:57:13: 82000000 INFO @ Tue, 04 Sep 2018 16:57:14: 81000000 INFO @ Tue, 04 Sep 2018 16:57:18: 85000000 INFO @ Tue, 04 Sep 2018 16:57:19: 83000000 INFO @ Tue, 04 Sep 2018 16:57:20: 82000000 INFO @ Tue, 04 Sep 2018 16:57:24: 86000000 INFO @ Tue, 04 Sep 2018 16:57:25: 84000000 INFO @ Tue, 04 Sep 2018 16:57:27: 83000000 INFO @ Tue, 04 Sep 2018 16:57:30: 87000000 INFO @ Tue, 04 Sep 2018 16:57:31: 85000000 INFO @ Tue, 04 Sep 2018 16:57:33: 84000000 INFO @ Tue, 04 Sep 2018 16:57:35: 88000000 INFO @ Tue, 04 Sep 2018 16:57:37: 86000000 INFO @ Tue, 04 Sep 2018 16:57:39: 85000000 INFO @ Tue, 04 Sep 2018 16:57:41: 89000000 INFO @ Tue, 04 Sep 2018 16:57:43: 87000000 INFO @ Tue, 04 Sep 2018 16:57:45: 86000000 INFO @ Tue, 04 Sep 2018 16:57:47: 90000000 INFO @ Tue, 04 Sep 2018 16:57:49: 88000000 INFO @ Tue, 04 Sep 2018 16:57:51: 87000000 INFO @ Tue, 04 Sep 2018 16:57:52: 91000000 INFO @ Tue, 04 Sep 2018 16:57:55: 89000000 INFO @ Tue, 04 Sep 2018 16:57:57: 88000000 INFO @ Tue, 04 Sep 2018 16:57:58: 92000000 INFO @ Tue, 04 Sep 2018 16:58:01: 90000000 INFO @ Tue, 04 Sep 2018 16:58:03: 89000000 INFO @ Tue, 04 Sep 2018 16:58:04: 93000000 INFO @ Tue, 04 Sep 2018 16:58:07: 91000000 INFO @ Tue, 04 Sep 2018 16:58:09: 90000000 INFO @ Tue, 04 Sep 2018 16:58:10: 94000000 INFO @ Tue, 04 Sep 2018 16:58:13: 92000000 INFO @ Tue, 04 Sep 2018 16:58:15: 95000000 INFO @ Tue, 04 Sep 2018 16:58:15: 91000000 INFO @ Tue, 04 Sep 2018 16:58:19: 93000000 INFO @ Tue, 04 Sep 2018 16:58:21: 96000000 INFO @ Tue, 04 Sep 2018 16:58:21: 92000000 INFO @ Tue, 04 Sep 2018 16:58:25: 94000000 INFO @ Tue, 04 Sep 2018 16:58:27: 97000000 INFO @ Tue, 04 Sep 2018 16:58:27: 93000000 INFO @ Tue, 04 Sep 2018 16:58:31: 95000000 INFO @ Tue, 04 Sep 2018 16:58:32: 98000000 INFO @ Tue, 04 Sep 2018 16:58:33: 94000000 INFO @ Tue, 04 Sep 2018 16:58:36: #1 tag size is determined as 76 bps INFO @ Tue, 04 Sep 2018 16:58:36: #1 tag size = 76 INFO @ Tue, 04 Sep 2018 16:58:36: #1 total tags in treatment: 45093543 INFO @ Tue, 04 Sep 2018 16:58:36: #1 user defined the maximum tags... INFO @ Tue, 04 Sep 2018 16:58:36: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 04 Sep 2018 16:58:37: #1 tags after filtering in treatment: 27215386 INFO @ Tue, 04 Sep 2018 16:58:37: #1 Redundant rate of treatment: 0.40 INFO @ Tue, 04 Sep 2018 16:58:37: #1 finished! INFO @ Tue, 04 Sep 2018 16:58:37: #2 Build Peak Model... INFO @ Tue, 04 Sep 2018 16:58:37: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 04 Sep 2018 16:58:37: 96000000 INFO @ Tue, 04 Sep 2018 16:58:39: #2 number of paired peaks: 4066 INFO @ Tue, 04 Sep 2018 16:58:39: start model_add_line... INFO @ Tue, 04 Sep 2018 16:58:40: 95000000 INFO @ Tue, 04 Sep 2018 16:58:40: start X-correlation... INFO @ Tue, 04 Sep 2018 16:58:40: end of X-cor INFO @ Tue, 04 Sep 2018 16:58:40: #2 finished! INFO @ Tue, 04 Sep 2018 16:58:40: #2 predicted fragment length is 164 bps INFO @ Tue, 04 Sep 2018 16:58:40: #2 alternative fragment length(s) may be 164 bps INFO @ Tue, 04 Sep 2018 16:58:40: #2.2 Generate R script for model : SRX4279649.20_model.r INFO @ Tue, 04 Sep 2018 16:58:40: #3 Call peaks... INFO @ Tue, 04 Sep 2018 16:58:40: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 04 Sep 2018 16:58:43: 97000000 INFO @ Tue, 04 Sep 2018 16:58:46: 96000000 INFO @ Tue, 04 Sep 2018 16:58:49: 98000000 INFO @ Tue, 04 Sep 2018 16:58:52: 97000000 INFO @ Tue, 04 Sep 2018 16:58:53: #1 tag size is determined as 76 bps INFO @ Tue, 04 Sep 2018 16:58:53: #1 tag size = 76 INFO @ Tue, 04 Sep 2018 16:58:53: #1 total tags in treatment: 45093543 INFO @ Tue, 04 Sep 2018 16:58:53: #1 user defined the maximum tags... INFO @ Tue, 04 Sep 2018 16:58:53: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 04 Sep 2018 16:58:54: #1 tags after filtering in treatment: 27215386 INFO @ Tue, 04 Sep 2018 16:58:54: #1 Redundant rate of treatment: 0.40 INFO @ Tue, 04 Sep 2018 16:58:54: #1 finished! INFO @ Tue, 04 Sep 2018 16:58:54: #2 Build Peak Model... INFO @ Tue, 04 Sep 2018 16:58:54: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 04 Sep 2018 16:58:57: #2 number of paired peaks: 4066 INFO @ Tue, 04 Sep 2018 16:58:57: start model_add_line... INFO @ Tue, 04 Sep 2018 16:58:57: start X-correlation... INFO @ Tue, 04 Sep 2018 16:58:57: end of X-cor INFO @ Tue, 04 Sep 2018 16:58:57: #2 finished! INFO @ Tue, 04 Sep 2018 16:58:57: #2 predicted fragment length is 164 bps INFO @ Tue, 04 Sep 2018 16:58:57: #2 alternative fragment length(s) may be 164 bps INFO @ Tue, 04 Sep 2018 16:58:57: #2.2 Generate R script for model : SRX4279649.10_model.r INFO @ Tue, 04 Sep 2018 16:58:57: #3 Call peaks... INFO @ Tue, 04 Sep 2018 16:58:57: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 04 Sep 2018 16:58:57: 98000000 INFO @ Tue, 04 Sep 2018 16:59:01: #1 tag size is determined as 76 bps INFO @ Tue, 04 Sep 2018 16:59:01: #1 tag size = 76 INFO @ Tue, 04 Sep 2018 16:59:01: #1 total tags in treatment: 45093543 INFO @ Tue, 04 Sep 2018 16:59:01: #1 user defined the maximum tags... INFO @ Tue, 04 Sep 2018 16:59:01: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 04 Sep 2018 16:59:02: #1 tags after filtering in treatment: 27215386 INFO @ Tue, 04 Sep 2018 16:59:02: #1 Redundant rate of treatment: 0.40 INFO @ Tue, 04 Sep 2018 16:59:02: #1 finished! INFO @ Tue, 04 Sep 2018 16:59:02: #2 Build Peak Model... INFO @ Tue, 04 Sep 2018 16:59:02: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 04 Sep 2018 16:59:05: #2 number of paired peaks: 4066 INFO @ Tue, 04 Sep 2018 16:59:05: start model_add_line... INFO @ Tue, 04 Sep 2018 16:59:05: start X-correlation... INFO @ Tue, 04 Sep 2018 16:59:05: end of X-cor INFO @ Tue, 04 Sep 2018 16:59:05: #2 finished! INFO @ Tue, 04 Sep 2018 16:59:05: #2 predicted fragment length is 164 bps INFO @ Tue, 04 Sep 2018 16:59:05: #2 alternative fragment length(s) may be 164 bps INFO @ Tue, 04 Sep 2018 16:59:05: #2.2 Generate R script for model : SRX4279649.05_model.r INFO @ Tue, 04 Sep 2018 16:59:05: #3 Call peaks... INFO @ Tue, 04 Sep 2018 16:59:05: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 04 Sep 2018 16:59:55: #3 Call peaks for each chromosome... INFO @ Tue, 04 Sep 2018 17:00:15: #3 Call peaks for each chromosome... INFO @ Tue, 04 Sep 2018 17:00:23: #3 Call peaks for each chromosome... INFO @ Tue, 04 Sep 2018 17:00:27: #4 Write output xls file... SRX4279649.20_peaks.xls INFO @ Tue, 04 Sep 2018 17:00:27: #4 Write peak in narrowPeak format file... SRX4279649.20_peaks.narrowPeak INFO @ Tue, 04 Sep 2018 17:00:27: #4 Write summits bed file... SRX4279649.20_summits.bed INFO @ Tue, 04 Sep 2018 17:00:27: Done! pass1 - making usageList (14 chroms): 4 millis pass2 - checking and writing primary data (13992 records, 4 fields): 20 millis CompletedMACS2peakCalling INFO @ Tue, 04 Sep 2018 17:00:48: #4 Write output xls file... SRX4279649.10_peaks.xls INFO @ Tue, 04 Sep 2018 17:00:48: #4 Write peak in narrowPeak format file... SRX4279649.10_peaks.narrowPeak INFO @ Tue, 04 Sep 2018 17:00:48: #4 Write summits bed file... SRX4279649.10_summits.bed INFO @ Tue, 04 Sep 2018 17:00:48: Done! pass1 - making usageList (14 chroms): 6 millis pass2 - checking and writing primary data (21010 records, 4 fields): 26 millis CompletedMACS2peakCalling INFO @ Tue, 04 Sep 2018 17:00:59: #4 Write output xls file... SRX4279649.05_peaks.xls INFO @ Tue, 04 Sep 2018 17:00:59: #4 Write peak in narrowPeak format file... SRX4279649.05_peaks.narrowPeak INFO @ Tue, 04 Sep 2018 17:00:59: #4 Write summits bed file... SRX4279649.05_summits.bed INFO @ Tue, 04 Sep 2018 17:00:59: Done! pass1 - making usageList (14 chroms): 14 millis pass2 - checking and writing primary data (28026 records, 4 fields): 42 millis CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。