Job ID = 12265207 SRX = SRX3945497 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 39843406 spots for SRR7013047/SRR7013047.sra Written 39843406 spots for SRR7013047/SRR7013047.sra fastq に変換しました。 bowtie でマッピング中... Your job 12265564 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:50:54 39843406 reads; of these: 39843406 (100.00%) were paired; of these: 12163838 (30.53%) aligned concordantly 0 times 21166748 (53.12%) aligned concordantly exactly 1 time 6512820 (16.35%) aligned concordantly >1 times ---- 12163838 pairs aligned concordantly 0 times; of these: 2139472 (17.59%) aligned discordantly 1 time ---- 10024366 pairs aligned 0 times concordantly or discordantly; of these: 20048732 mates make up the pairs; of these: 18754750 (93.55%) aligned 0 times 645248 (3.22%) aligned exactly 1 time 648734 (3.24%) aligned >1 times 76.46% overall alignment rate Time searching: 00:50:54 Overall time: 00:50:54 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 28 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 6223773 / 25406300 = 0.2450 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 07:32:14: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX3945497/SRX3945497.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX3945497/SRX3945497.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX3945497/SRX3945497.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX3945497/SRX3945497.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 07:32:14: #1 read tag files... INFO @ Sat, 03 Apr 2021 07:32:14: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 07:32:23: 1000000 INFO @ Sat, 03 Apr 2021 07:32:31: 2000000 INFO @ Sat, 03 Apr 2021 07:32:39: 3000000 WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 07:32:44: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX3945497/SRX3945497.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX3945497/SRX3945497.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX3945497/SRX3945497.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX3945497/SRX3945497.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 07:32:44: #1 read tag files... INFO @ Sat, 03 Apr 2021 07:32:44: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 07:32:48: 4000000 INFO @ Sat, 03 Apr 2021 07:32:56: 1000000 INFO @ Sat, 03 Apr 2021 07:32:57: 5000000 INFO @ Sat, 03 Apr 2021 07:33:07: 6000000 INFO @ Sat, 03 Apr 2021 07:33:08: 2000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 07:33:14: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX3945497/SRX3945497.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX3945497/SRX3945497.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX3945497/SRX3945497.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX3945497/SRX3945497.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 07:33:14: #1 read tag files... INFO @ Sat, 03 Apr 2021 07:33:14: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 07:33:16: 7000000 INFO @ Sat, 03 Apr 2021 07:33:21: 3000000 INFO @ Sat, 03 Apr 2021 07:33:25: 8000000 INFO @ Sat, 03 Apr 2021 07:33:28: 1000000 INFO @ Sat, 03 Apr 2021 07:33:34: 4000000 INFO @ Sat, 03 Apr 2021 07:33:34: 9000000 INFO @ Sat, 03 Apr 2021 07:33:43: 2000000 INFO @ Sat, 03 Apr 2021 07:33:43: 10000000 INFO @ Sat, 03 Apr 2021 07:33:47: 5000000 INFO @ Sat, 03 Apr 2021 07:33:52: 11000000 INFO @ Sat, 03 Apr 2021 07:33:57: 3000000 INFO @ Sat, 03 Apr 2021 07:33:59: 6000000 INFO @ Sat, 03 Apr 2021 07:34:00: 12000000 INFO @ Sat, 03 Apr 2021 07:34:09: 13000000 INFO @ Sat, 03 Apr 2021 07:34:11: 4000000 INFO @ Sat, 03 Apr 2021 07:34:12: 7000000 INFO @ Sat, 03 Apr 2021 07:34:18: 14000000 INFO @ Sat, 03 Apr 2021 07:34:25: 5000000 INFO @ Sat, 03 Apr 2021 07:34:25: 8000000 INFO @ Sat, 03 Apr 2021 07:34:27: 15000000 INFO @ Sat, 03 Apr 2021 07:34:36: 16000000 INFO @ Sat, 03 Apr 2021 07:34:38: 9000000 INFO @ Sat, 03 Apr 2021 07:34:39: 6000000 INFO @ Sat, 03 Apr 2021 07:34:45: 17000000 INFO @ Sat, 03 Apr 2021 07:34:51: 10000000 INFO @ Sat, 03 Apr 2021 07:34:53: 7000000 INFO @ Sat, 03 Apr 2021 07:34:54: 18000000 INFO @ Sat, 03 Apr 2021 07:35:03: 19000000 INFO @ Sat, 03 Apr 2021 07:35:05: 11000000 INFO @ Sat, 03 Apr 2021 07:35:08: 8000000 INFO @ Sat, 03 Apr 2021 07:35:12: 20000000 INFO @ Sat, 03 Apr 2021 07:35:19: 12000000 INFO @ Sat, 03 Apr 2021 07:35:21: 21000000 INFO @ Sat, 03 Apr 2021 07:35:22: 9000000 INFO @ Sat, 03 Apr 2021 07:35:30: 22000000 INFO @ Sat, 03 Apr 2021 07:35:32: 13000000 INFO @ Sat, 03 Apr 2021 07:35:36: 10000000 INFO @ Sat, 03 Apr 2021 07:35:38: 23000000 INFO @ Sat, 03 Apr 2021 07:35:45: 14000000 INFO @ Sat, 03 Apr 2021 07:35:47: 24000000 INFO @ Sat, 03 Apr 2021 07:35:50: 11000000 INFO @ Sat, 03 Apr 2021 07:35:56: 25000000 INFO @ Sat, 03 Apr 2021 07:35:59: 15000000 INFO @ Sat, 03 Apr 2021 07:36:04: 26000000 INFO @ Sat, 03 Apr 2021 07:36:04: 12000000 INFO @ Sat, 03 Apr 2021 07:36:12: 27000000 INFO @ Sat, 03 Apr 2021 07:36:13: 16000000 INFO @ Sat, 03 Apr 2021 07:36:18: 13000000 INFO @ Sat, 03 Apr 2021 07:36:21: 28000000 INFO @ Sat, 03 Apr 2021 07:36:26: 17000000 INFO @ Sat, 03 Apr 2021 07:36:29: 29000000 INFO @ Sat, 03 Apr 2021 07:36:32: 14000000 INFO @ Sat, 03 Apr 2021 07:36:37: 30000000 INFO @ Sat, 03 Apr 2021 07:36:40: 18000000 INFO @ Sat, 03 Apr 2021 07:36:46: 31000000 INFO @ Sat, 03 Apr 2021 07:36:46: 15000000 INFO @ Sat, 03 Apr 2021 07:36:53: 19000000 INFO @ Sat, 03 Apr 2021 07:36:54: 32000000 INFO @ Sat, 03 Apr 2021 07:37:00: 16000000 INFO @ Sat, 03 Apr 2021 07:37:01: 33000000 INFO @ Sat, 03 Apr 2021 07:37:06: 20000000 INFO @ Sat, 03 Apr 2021 07:37:09: 34000000 INFO @ Sat, 03 Apr 2021 07:37:13: 17000000 INFO @ Sat, 03 Apr 2021 07:37:17: 35000000 INFO @ Sat, 03 Apr 2021 07:37:19: 21000000 INFO @ Sat, 03 Apr 2021 07:37:25: 36000000 INFO @ Sat, 03 Apr 2021 07:37:28: 18000000 INFO @ Sat, 03 Apr 2021 07:37:32: 22000000 INFO @ Sat, 03 Apr 2021 07:37:33: 37000000 INFO @ Sat, 03 Apr 2021 07:37:41: 38000000 INFO @ Sat, 03 Apr 2021 07:37:41: 19000000 INFO @ Sat, 03 Apr 2021 07:37:44: 23000000 INFO @ Sat, 03 Apr 2021 07:37:49: 39000000 INFO @ Sat, 03 Apr 2021 07:37:55: 20000000 INFO @ Sat, 03 Apr 2021 07:37:57: 24000000 INFO @ Sat, 03 Apr 2021 07:37:57: 40000000 INFO @ Sat, 03 Apr 2021 07:38:05: 41000000 INFO @ Sat, 03 Apr 2021 07:38:08: 21000000 INFO @ Sat, 03 Apr 2021 07:38:09: 25000000 INFO @ Sat, 03 Apr 2021 07:38:13: 42000000 INFO @ Sat, 03 Apr 2021 07:38:21: 26000000 INFO @ Sat, 03 Apr 2021 07:38:21: 22000000 INFO @ Sat, 03 Apr 2021 07:38:22: 43000000 INFO @ Sat, 03 Apr 2021 07:38:30: 44000000 INFO @ Sat, 03 Apr 2021 07:38:33: 27000000 INFO @ Sat, 03 Apr 2021 07:38:34: 23000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Sat, 03 Apr 2021 07:38:39: 45000000 INFO @ Sat, 03 Apr 2021 07:38:45: 28000000 INFO @ Sat, 03 Apr 2021 07:38:46: 24000000 INFO @ Sat, 03 Apr 2021 07:38:48: 46000000 INFO @ Sat, 03 Apr 2021 07:38:56: 47000000 INFO @ Sat, 03 Apr 2021 07:38:56: 29000000 INFO @ Sat, 03 Apr 2021 07:38:59: 25000000 INFO @ Sat, 03 Apr 2021 07:39:04: 48000000 INFO @ Sat, 03 Apr 2021 07:39:09: 30000000 INFO @ Sat, 03 Apr 2021 07:39:10: #1 tag size is determined as 46 bps INFO @ Sat, 03 Apr 2021 07:39:10: #1 tag size = 46 INFO @ Sat, 03 Apr 2021 07:39:10: #1 total tags in treatment: 21666846 INFO @ Sat, 03 Apr 2021 07:39:10: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 07:39:10: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 07:39:11: #1 tags after filtering in treatment: 14616907 INFO @ Sat, 03 Apr 2021 07:39:11: #1 Redundant rate of treatment: 0.33 INFO @ Sat, 03 Apr 2021 07:39:11: #1 finished! INFO @ Sat, 03 Apr 2021 07:39:11: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 07:39:11: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 07:39:12: 26000000 INFO @ Sat, 03 Apr 2021 07:39:12: #2 number of paired peaks: 704 WARNING @ Sat, 03 Apr 2021 07:39:12: Fewer paired peaks (704) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 704 pairs to build model! INFO @ Sat, 03 Apr 2021 07:39:12: start model_add_line... INFO @ Sat, 03 Apr 2021 07:39:12: start X-correlation... INFO @ Sat, 03 Apr 2021 07:39:12: end of X-cor INFO @ Sat, 03 Apr 2021 07:39:12: #2 finished! INFO @ Sat, 03 Apr 2021 07:39:12: #2 predicted fragment length is 40 bps INFO @ Sat, 03 Apr 2021 07:39:12: #2 alternative fragment length(s) may be 4,40 bps INFO @ Sat, 03 Apr 2021 07:39:12: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX3945497/SRX3945497.05_model.r WARNING @ Sat, 03 Apr 2021 07:39:12: #2 Since the d (40) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 07:39:12: #2 You may need to consider one of the other alternative d(s): 4,40 WARNING @ Sat, 03 Apr 2021 07:39:12: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 07:39:12: #3 Call peaks... INFO @ Sat, 03 Apr 2021 07:39:12: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 07:39:20: 31000000 INFO @ Sat, 03 Apr 2021 07:39:24: 27000000 INFO @ Sat, 03 Apr 2021 07:39:32: 32000000 INFO @ Sat, 03 Apr 2021 07:39:35: 28000000 INFO @ Sat, 03 Apr 2021 07:39:44: 33000000 INFO @ Sat, 03 Apr 2021 07:39:47: 29000000 INFO @ Sat, 03 Apr 2021 07:39:52: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 07:39:56: 34000000 INFO @ Sat, 03 Apr 2021 07:39:58: 30000000 BigWig に変換しました。 INFO @ Sat, 03 Apr 2021 07:40:07: 35000000 INFO @ Sat, 03 Apr 2021 07:40:10: 31000000 INFO @ Sat, 03 Apr 2021 07:40:15: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX3945497/SRX3945497.05_peaks.xls INFO @ Sat, 03 Apr 2021 07:40:15: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX3945497/SRX3945497.05_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 07:40:15: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX3945497/SRX3945497.05_summits.bed INFO @ Sat, 03 Apr 2021 07:40:15: Done! pass1 - making usageList (15 chroms): 4 millis pass2 - checking and writing primary data (18439 records, 4 fields): 24 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 07:40:19: 36000000 INFO @ Sat, 03 Apr 2021 07:40:22: 32000000 INFO @ Sat, 03 Apr 2021 07:40:31: 37000000 INFO @ Sat, 03 Apr 2021 07:40:34: 33000000 INFO @ Sat, 03 Apr 2021 07:40:43: 38000000 INFO @ Sat, 03 Apr 2021 07:40:46: 34000000 INFO @ Sat, 03 Apr 2021 07:40:54: 39000000 INFO @ Sat, 03 Apr 2021 07:40:57: 35000000 INFO @ Sat, 03 Apr 2021 07:41:06: 40000000 INFO @ Sat, 03 Apr 2021 07:41:09: 36000000 INFO @ Sat, 03 Apr 2021 07:41:18: 41000000 INFO @ Sat, 03 Apr 2021 07:41:20: 37000000 INFO @ Sat, 03 Apr 2021 07:41:30: 42000000 INFO @ Sat, 03 Apr 2021 07:41:32: 38000000 INFO @ Sat, 03 Apr 2021 07:41:43: 43000000 INFO @ Sat, 03 Apr 2021 07:41:43: 39000000 INFO @ Sat, 03 Apr 2021 07:41:54: 40000000 INFO @ Sat, 03 Apr 2021 07:41:55: 44000000 INFO @ Sat, 03 Apr 2021 07:42:06: 41000000 INFO @ Sat, 03 Apr 2021 07:42:07: 45000000 INFO @ Sat, 03 Apr 2021 07:42:17: 42000000 INFO @ Sat, 03 Apr 2021 07:42:20: 46000000 INFO @ Sat, 03 Apr 2021 07:42:31: 43000000 INFO @ Sat, 03 Apr 2021 07:42:35: 47000000 INFO @ Sat, 03 Apr 2021 07:42:44: 44000000 INFO @ Sat, 03 Apr 2021 07:42:50: 48000000 INFO @ Sat, 03 Apr 2021 07:42:57: #1 tag size is determined as 46 bps INFO @ Sat, 03 Apr 2021 07:42:57: #1 tag size = 46 INFO @ Sat, 03 Apr 2021 07:42:57: #1 total tags in treatment: 21666846 INFO @ Sat, 03 Apr 2021 07:42:57: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 07:42:57: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 07:42:58: 45000000 INFO @ Sat, 03 Apr 2021 07:42:58: #1 tags after filtering in treatment: 14616907 INFO @ Sat, 03 Apr 2021 07:42:58: #1 Redundant rate of treatment: 0.33 INFO @ Sat, 03 Apr 2021 07:42:58: #1 finished! INFO @ Sat, 03 Apr 2021 07:42:58: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 07:42:58: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 07:42:59: #2 number of paired peaks: 704 WARNING @ Sat, 03 Apr 2021 07:42:59: Fewer paired peaks (704) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 704 pairs to build model! INFO @ Sat, 03 Apr 2021 07:42:59: start model_add_line... INFO @ Sat, 03 Apr 2021 07:43:00: start X-correlation... INFO @ Sat, 03 Apr 2021 07:43:00: end of X-cor INFO @ Sat, 03 Apr 2021 07:43:00: #2 finished! INFO @ Sat, 03 Apr 2021 07:43:00: #2 predicted fragment length is 40 bps INFO @ Sat, 03 Apr 2021 07:43:00: #2 alternative fragment length(s) may be 4,40 bps INFO @ Sat, 03 Apr 2021 07:43:00: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX3945497/SRX3945497.10_model.r WARNING @ Sat, 03 Apr 2021 07:43:00: #2 Since the d (40) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 07:43:00: #2 You may need to consider one of the other alternative d(s): 4,40 WARNING @ Sat, 03 Apr 2021 07:43:00: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 07:43:00: #3 Call peaks... INFO @ Sat, 03 Apr 2021 07:43:00: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 07:43:10: 46000000 INFO @ Sat, 03 Apr 2021 07:43:22: 47000000 INFO @ Sat, 03 Apr 2021 07:43:37: 48000000 INFO @ Sat, 03 Apr 2021 07:43:40: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 07:43:44: #1 tag size is determined as 46 bps INFO @ Sat, 03 Apr 2021 07:43:44: #1 tag size = 46 INFO @ Sat, 03 Apr 2021 07:43:44: #1 total tags in treatment: 21666846 INFO @ Sat, 03 Apr 2021 07:43:44: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 07:43:44: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 07:43:45: #1 tags after filtering in treatment: 14616907 INFO @ Sat, 03 Apr 2021 07:43:45: #1 Redundant rate of treatment: 0.33 INFO @ Sat, 03 Apr 2021 07:43:45: #1 finished! INFO @ Sat, 03 Apr 2021 07:43:45: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 07:43:45: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 07:43:46: #2 number of paired peaks: 704 WARNING @ Sat, 03 Apr 2021 07:43:46: Fewer paired peaks (704) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 704 pairs to build model! INFO @ Sat, 03 Apr 2021 07:43:46: start model_add_line... INFO @ Sat, 03 Apr 2021 07:43:47: start X-correlation... INFO @ Sat, 03 Apr 2021 07:43:47: end of X-cor INFO @ Sat, 03 Apr 2021 07:43:47: #2 finished! INFO @ Sat, 03 Apr 2021 07:43:47: #2 predicted fragment length is 40 bps INFO @ Sat, 03 Apr 2021 07:43:47: #2 alternative fragment length(s) may be 4,40 bps INFO @ Sat, 03 Apr 2021 07:43:47: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX3945497/SRX3945497.20_model.r WARNING @ Sat, 03 Apr 2021 07:43:47: #2 Since the d (40) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 07:43:47: #2 You may need to consider one of the other alternative d(s): 4,40 WARNING @ Sat, 03 Apr 2021 07:43:47: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 07:43:47: #3 Call peaks... INFO @ Sat, 03 Apr 2021 07:43:47: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 07:44:04: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX3945497/SRX3945497.10_peaks.xls INFO @ Sat, 03 Apr 2021 07:44:04: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX3945497/SRX3945497.10_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 07:44:04: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX3945497/SRX3945497.10_summits.bed INFO @ Sat, 03 Apr 2021 07:44:04: Done! pass1 - making usageList (15 chroms): 4 millis pass2 - checking and writing primary data (7232 records, 4 fields): 15 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 07:44:27: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 07:44:50: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX3945497/SRX3945497.20_peaks.xls INFO @ Sat, 03 Apr 2021 07:44:50: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX3945497/SRX3945497.20_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 07:44:50: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX3945497/SRX3945497.20_summits.bed INFO @ Sat, 03 Apr 2021 07:44:50: Done! pass1 - making usageList (9 chroms): 1 millis pass2 - checking and writing primary data (307 records, 4 fields): 3 millis CompletedMACS2peakCalling