Job ID = 12265206 SRX = SRX3945496 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 37271953 spots for SRR7013046/SRR7013046.sra Written 37271953 spots for SRR7013046/SRR7013046.sra fastq に変換しました。 bowtie でマッピング中... Your job 12265668 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:48:40 37271953 reads; of these: 37271953 (100.00%) were paired; of these: 10810264 (29.00%) aligned concordantly 0 times 21236234 (56.98%) aligned concordantly exactly 1 time 5225455 (14.02%) aligned concordantly >1 times ---- 10810264 pairs aligned concordantly 0 times; of these: 1988520 (18.39%) aligned discordantly 1 time ---- 8821744 pairs aligned 0 times concordantly or discordantly; of these: 17643488 mates make up the pairs; of these: 16485164 (93.43%) aligned 0 times 596321 (3.38%) aligned exactly 1 time 562003 (3.19%) aligned >1 times 77.89% overall alignment rate Time searching: 00:48:40 Overall time: 00:48:40 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 24 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 3561478 / 24128858 = 0.1476 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 07:57:02: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX3945496/SRX3945496.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX3945496/SRX3945496.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX3945496/SRX3945496.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX3945496/SRX3945496.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 07:57:02: #1 read tag files... INFO @ Sat, 03 Apr 2021 07:57:02: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 07:57:14: 1000000 INFO @ Sat, 03 Apr 2021 07:57:25: 2000000 WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 07:57:32: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX3945496/SRX3945496.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX3945496/SRX3945496.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX3945496/SRX3945496.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX3945496/SRX3945496.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 07:57:32: #1 read tag files... INFO @ Sat, 03 Apr 2021 07:57:32: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 07:57:38: 3000000 INFO @ Sat, 03 Apr 2021 07:57:43: 1000000 INFO @ Sat, 03 Apr 2021 07:57:50: 4000000 INFO @ Sat, 03 Apr 2021 07:57:54: 2000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 07:58:02: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX3945496/SRX3945496.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX3945496/SRX3945496.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX3945496/SRX3945496.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX3945496/SRX3945496.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 07:58:02: #1 read tag files... INFO @ Sat, 03 Apr 2021 07:58:02: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 07:58:03: 5000000 INFO @ Sat, 03 Apr 2021 07:58:03: 3000000 INFO @ Sat, 03 Apr 2021 07:58:14: 4000000 INFO @ Sat, 03 Apr 2021 07:58:14: 1000000 INFO @ Sat, 03 Apr 2021 07:58:16: 6000000 INFO @ Sat, 03 Apr 2021 07:58:24: 5000000 INFO @ Sat, 03 Apr 2021 07:58:28: 2000000 INFO @ Sat, 03 Apr 2021 07:58:28: 7000000 INFO @ Sat, 03 Apr 2021 07:58:34: 6000000 INFO @ Sat, 03 Apr 2021 07:58:40: 3000000 INFO @ Sat, 03 Apr 2021 07:58:41: 8000000 INFO @ Sat, 03 Apr 2021 07:58:44: 7000000 INFO @ Sat, 03 Apr 2021 07:58:52: 4000000 INFO @ Sat, 03 Apr 2021 07:58:53: 9000000 INFO @ Sat, 03 Apr 2021 07:58:53: 8000000 INFO @ Sat, 03 Apr 2021 07:59:03: 9000000 INFO @ Sat, 03 Apr 2021 07:59:04: 5000000 INFO @ Sat, 03 Apr 2021 07:59:05: 10000000 INFO @ Sat, 03 Apr 2021 07:59:13: 10000000 INFO @ Sat, 03 Apr 2021 07:59:16: 6000000 INFO @ Sat, 03 Apr 2021 07:59:17: 11000000 INFO @ Sat, 03 Apr 2021 07:59:23: 11000000 INFO @ Sat, 03 Apr 2021 07:59:28: 7000000 INFO @ Sat, 03 Apr 2021 07:59:29: 12000000 INFO @ Sat, 03 Apr 2021 07:59:32: 12000000 INFO @ Sat, 03 Apr 2021 07:59:39: 8000000 INFO @ Sat, 03 Apr 2021 07:59:42: 13000000 INFO @ Sat, 03 Apr 2021 07:59:42: 13000000 INFO @ Sat, 03 Apr 2021 07:59:51: 9000000 INFO @ Sat, 03 Apr 2021 07:59:52: 14000000 INFO @ Sat, 03 Apr 2021 07:59:54: 14000000 INFO @ Sat, 03 Apr 2021 08:00:01: 15000000 INFO @ Sat, 03 Apr 2021 08:00:03: 10000000 INFO @ Sat, 03 Apr 2021 08:00:06: 15000000 INFO @ Sat, 03 Apr 2021 08:00:11: 16000000 INFO @ Sat, 03 Apr 2021 08:00:15: 11000000 INFO @ Sat, 03 Apr 2021 08:00:18: 16000000 INFO @ Sat, 03 Apr 2021 08:00:20: 17000000 INFO @ Sat, 03 Apr 2021 08:00:26: 12000000 INFO @ Sat, 03 Apr 2021 08:00:30: 18000000 INFO @ Sat, 03 Apr 2021 08:00:30: 17000000 INFO @ Sat, 03 Apr 2021 08:00:39: 13000000 INFO @ Sat, 03 Apr 2021 08:00:39: 19000000 INFO @ Sat, 03 Apr 2021 08:00:42: 18000000 INFO @ Sat, 03 Apr 2021 08:00:48: 20000000 INFO @ Sat, 03 Apr 2021 08:00:50: 14000000 INFO @ Sat, 03 Apr 2021 08:00:54: 19000000 INFO @ Sat, 03 Apr 2021 08:00:58: 21000000 INFO @ Sat, 03 Apr 2021 08:01:02: 15000000 INFO @ Sat, 03 Apr 2021 08:01:07: 20000000 INFO @ Sat, 03 Apr 2021 08:01:07: 22000000 INFO @ Sat, 03 Apr 2021 08:01:14: 16000000 INFO @ Sat, 03 Apr 2021 08:01:17: 23000000 INFO @ Sat, 03 Apr 2021 08:01:20: 21000000 INFO @ Sat, 03 Apr 2021 08:01:25: 17000000 INFO @ Sat, 03 Apr 2021 08:01:26: 24000000 INFO @ Sat, 03 Apr 2021 08:01:32: 22000000 INFO @ Sat, 03 Apr 2021 08:01:35: 25000000 INFO @ Sat, 03 Apr 2021 08:01:37: 18000000 INFO @ Sat, 03 Apr 2021 08:01:45: 26000000 INFO @ Sat, 03 Apr 2021 08:01:45: 23000000 INFO @ Sat, 03 Apr 2021 08:01:49: 19000000 INFO @ Sat, 03 Apr 2021 08:01:54: 27000000 INFO @ Sat, 03 Apr 2021 08:01:58: 24000000 INFO @ Sat, 03 Apr 2021 08:02:00: 20000000 INFO @ Sat, 03 Apr 2021 08:02:03: 28000000 INFO @ Sat, 03 Apr 2021 08:02:10: 25000000 INFO @ Sat, 03 Apr 2021 08:02:12: 21000000 INFO @ Sat, 03 Apr 2021 08:02:13: 29000000 INFO @ Sat, 03 Apr 2021 08:02:22: 30000000 INFO @ Sat, 03 Apr 2021 08:02:23: 26000000 INFO @ Sat, 03 Apr 2021 08:02:24: 22000000 INFO @ Sat, 03 Apr 2021 08:02:31: 31000000 INFO @ Sat, 03 Apr 2021 08:02:35: 23000000 INFO @ Sat, 03 Apr 2021 08:02:36: 27000000 INFO @ Sat, 03 Apr 2021 08:02:40: 32000000 INFO @ Sat, 03 Apr 2021 08:02:47: 24000000 INFO @ Sat, 03 Apr 2021 08:02:47: 28000000 INFO @ Sat, 03 Apr 2021 08:02:49: 33000000 INFO @ Sat, 03 Apr 2021 08:02:59: 34000000 INFO @ Sat, 03 Apr 2021 08:02:59: 29000000 INFO @ Sat, 03 Apr 2021 08:02:59: 25000000 INFO @ Sat, 03 Apr 2021 08:03:08: 35000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Sat, 03 Apr 2021 08:03:10: 30000000 INFO @ Sat, 03 Apr 2021 08:03:10: 26000000 INFO @ Sat, 03 Apr 2021 08:03:17: 36000000 INFO @ Sat, 03 Apr 2021 08:03:21: 31000000 INFO @ Sat, 03 Apr 2021 08:03:22: 27000000 INFO @ Sat, 03 Apr 2021 08:03:27: 37000000 INFO @ Sat, 03 Apr 2021 08:03:32: 32000000 INFO @ Sat, 03 Apr 2021 08:03:34: 28000000 INFO @ Sat, 03 Apr 2021 08:03:36: 38000000 INFO @ Sat, 03 Apr 2021 08:03:43: 33000000 INFO @ Sat, 03 Apr 2021 08:03:46: 29000000 INFO @ Sat, 03 Apr 2021 08:03:46: 39000000 INFO @ Sat, 03 Apr 2021 08:03:55: 34000000 INFO @ Sat, 03 Apr 2021 08:03:56: 40000000 INFO @ Sat, 03 Apr 2021 08:03:58: 30000000 INFO @ Sat, 03 Apr 2021 08:04:06: 41000000 INFO @ Sat, 03 Apr 2021 08:04:06: 35000000 INFO @ Sat, 03 Apr 2021 08:04:09: 31000000 INFO @ Sat, 03 Apr 2021 08:04:16: 42000000 INFO @ Sat, 03 Apr 2021 08:04:17: 36000000 INFO @ Sat, 03 Apr 2021 08:04:20: 32000000 INFO @ Sat, 03 Apr 2021 08:04:25: 43000000 INFO @ Sat, 03 Apr 2021 08:04:28: 37000000 INFO @ Sat, 03 Apr 2021 08:04:31: 33000000 INFO @ Sat, 03 Apr 2021 08:04:35: 44000000 BigWig に変換しました。 INFO @ Sat, 03 Apr 2021 08:04:39: 38000000 INFO @ Sat, 03 Apr 2021 08:04:43: 34000000 INFO @ Sat, 03 Apr 2021 08:04:44: 45000000 INFO @ Sat, 03 Apr 2021 08:04:51: 39000000 INFO @ Sat, 03 Apr 2021 08:04:54: 46000000 INFO @ Sat, 03 Apr 2021 08:04:54: 35000000 INFO @ Sat, 03 Apr 2021 08:05:02: 40000000 INFO @ Sat, 03 Apr 2021 08:05:03: 47000000 INFO @ Sat, 03 Apr 2021 08:05:05: 36000000 INFO @ Sat, 03 Apr 2021 08:05:13: 48000000 INFO @ Sat, 03 Apr 2021 08:05:13: 41000000 INFO @ Sat, 03 Apr 2021 08:05:17: 37000000 INFO @ Sat, 03 Apr 2021 08:05:22: 49000000 INFO @ Sat, 03 Apr 2021 08:05:25: 42000000 INFO @ Sat, 03 Apr 2021 08:05:29: 38000000 INFO @ Sat, 03 Apr 2021 08:05:31: 50000000 INFO @ Sat, 03 Apr 2021 08:05:36: 43000000 INFO @ Sat, 03 Apr 2021 08:05:40: 39000000 INFO @ Sat, 03 Apr 2021 08:05:40: #1 tag size is determined as 50 bps INFO @ Sat, 03 Apr 2021 08:05:40: #1 tag size = 50 INFO @ Sat, 03 Apr 2021 08:05:40: #1 total tags in treatment: 22989823 INFO @ Sat, 03 Apr 2021 08:05:40: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 08:05:40: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 08:05:41: #1 tags after filtering in treatment: 15777190 INFO @ Sat, 03 Apr 2021 08:05:41: #1 Redundant rate of treatment: 0.31 INFO @ Sat, 03 Apr 2021 08:05:41: #1 finished! INFO @ Sat, 03 Apr 2021 08:05:41: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 08:05:41: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 08:05:42: #2 number of paired peaks: 582 WARNING @ Sat, 03 Apr 2021 08:05:42: Fewer paired peaks (582) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 582 pairs to build model! INFO @ Sat, 03 Apr 2021 08:05:42: start model_add_line... INFO @ Sat, 03 Apr 2021 08:05:43: start X-correlation... INFO @ Sat, 03 Apr 2021 08:05:43: end of X-cor INFO @ Sat, 03 Apr 2021 08:05:43: #2 finished! INFO @ Sat, 03 Apr 2021 08:05:43: #2 predicted fragment length is 37 bps INFO @ Sat, 03 Apr 2021 08:05:43: #2 alternative fragment length(s) may be 4,37 bps INFO @ Sat, 03 Apr 2021 08:05:43: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX3945496/SRX3945496.10_model.r WARNING @ Sat, 03 Apr 2021 08:05:43: #2 Since the d (37) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 08:05:43: #2 You may need to consider one of the other alternative d(s): 4,37 WARNING @ Sat, 03 Apr 2021 08:05:43: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 08:05:43: #3 Call peaks... INFO @ Sat, 03 Apr 2021 08:05:43: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 08:05:47: 44000000 INFO @ Sat, 03 Apr 2021 08:05:51: 40000000 INFO @ Sat, 03 Apr 2021 08:05:58: 45000000 INFO @ Sat, 03 Apr 2021 08:06:03: 41000000 INFO @ Sat, 03 Apr 2021 08:06:10: 46000000 INFO @ Sat, 03 Apr 2021 08:06:14: 42000000 INFO @ Sat, 03 Apr 2021 08:06:22: 47000000 INFO @ Sat, 03 Apr 2021 08:06:24: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 08:06:26: 43000000 INFO @ Sat, 03 Apr 2021 08:06:34: 48000000 INFO @ Sat, 03 Apr 2021 08:06:37: 44000000 INFO @ Sat, 03 Apr 2021 08:06:45: 49000000 INFO @ Sat, 03 Apr 2021 08:06:47: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX3945496/SRX3945496.10_peaks.xls INFO @ Sat, 03 Apr 2021 08:06:47: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX3945496/SRX3945496.10_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 08:06:47: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX3945496/SRX3945496.10_summits.bed INFO @ Sat, 03 Apr 2021 08:06:47: Done! pass1 - making usageList (15 chroms): 2 millis pass2 - checking and writing primary data (7070 records, 4 fields): 11 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 08:06:49: 45000000 INFO @ Sat, 03 Apr 2021 08:06:57: 50000000 INFO @ Sat, 03 Apr 2021 08:07:00: 46000000 INFO @ Sat, 03 Apr 2021 08:07:09: #1 tag size is determined as 50 bps INFO @ Sat, 03 Apr 2021 08:07:09: #1 tag size = 50 INFO @ Sat, 03 Apr 2021 08:07:09: #1 total tags in treatment: 22989823 INFO @ Sat, 03 Apr 2021 08:07:09: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 08:07:09: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 08:07:09: #1 tags after filtering in treatment: 15777190 INFO @ Sat, 03 Apr 2021 08:07:09: #1 Redundant rate of treatment: 0.31 INFO @ Sat, 03 Apr 2021 08:07:09: #1 finished! INFO @ Sat, 03 Apr 2021 08:07:09: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 08:07:09: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 08:07:11: #2 number of paired peaks: 582 WARNING @ Sat, 03 Apr 2021 08:07:11: Fewer paired peaks (582) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 582 pairs to build model! INFO @ Sat, 03 Apr 2021 08:07:11: start model_add_line... INFO @ Sat, 03 Apr 2021 08:07:11: start X-correlation... INFO @ Sat, 03 Apr 2021 08:07:11: end of X-cor INFO @ Sat, 03 Apr 2021 08:07:11: #2 finished! INFO @ Sat, 03 Apr 2021 08:07:11: #2 predicted fragment length is 37 bps INFO @ Sat, 03 Apr 2021 08:07:11: #2 alternative fragment length(s) may be 4,37 bps INFO @ Sat, 03 Apr 2021 08:07:11: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX3945496/SRX3945496.05_model.r WARNING @ Sat, 03 Apr 2021 08:07:11: #2 Since the d (37) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 08:07:11: #2 You may need to consider one of the other alternative d(s): 4,37 WARNING @ Sat, 03 Apr 2021 08:07:11: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 08:07:11: #3 Call peaks... INFO @ Sat, 03 Apr 2021 08:07:11: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 08:07:11: 47000000 INFO @ Sat, 03 Apr 2021 08:07:24: 48000000 INFO @ Sat, 03 Apr 2021 08:07:35: 49000000 INFO @ Sat, 03 Apr 2021 08:07:45: 50000000 INFO @ Sat, 03 Apr 2021 08:07:52: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 08:07:55: #1 tag size is determined as 50 bps INFO @ Sat, 03 Apr 2021 08:07:55: #1 tag size = 50 INFO @ Sat, 03 Apr 2021 08:07:55: #1 total tags in treatment: 22989823 INFO @ Sat, 03 Apr 2021 08:07:55: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 08:07:55: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 08:07:56: #1 tags after filtering in treatment: 15777190 INFO @ Sat, 03 Apr 2021 08:07:56: #1 Redundant rate of treatment: 0.31 INFO @ Sat, 03 Apr 2021 08:07:56: #1 finished! INFO @ Sat, 03 Apr 2021 08:07:56: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 08:07:56: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 08:07:57: #2 number of paired peaks: 582 WARNING @ Sat, 03 Apr 2021 08:07:57: Fewer paired peaks (582) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 582 pairs to build model! INFO @ Sat, 03 Apr 2021 08:07:57: start model_add_line... INFO @ Sat, 03 Apr 2021 08:07:57: start X-correlation... INFO @ Sat, 03 Apr 2021 08:07:57: end of X-cor INFO @ Sat, 03 Apr 2021 08:07:57: #2 finished! INFO @ Sat, 03 Apr 2021 08:07:57: #2 predicted fragment length is 37 bps INFO @ Sat, 03 Apr 2021 08:07:57: #2 alternative fragment length(s) may be 4,37 bps INFO @ Sat, 03 Apr 2021 08:07:57: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX3945496/SRX3945496.20_model.r WARNING @ Sat, 03 Apr 2021 08:07:57: #2 Since the d (37) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 08:07:57: #2 You may need to consider one of the other alternative d(s): 4,37 WARNING @ Sat, 03 Apr 2021 08:07:57: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 08:07:57: #3 Call peaks... INFO @ Sat, 03 Apr 2021 08:07:57: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 08:08:14: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX3945496/SRX3945496.05_peaks.xls INFO @ Sat, 03 Apr 2021 08:08:14: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX3945496/SRX3945496.05_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 08:08:15: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX3945496/SRX3945496.05_summits.bed INFO @ Sat, 03 Apr 2021 08:08:15: Done! pass1 - making usageList (15 chroms): 7 millis pass2 - checking and writing primary data (18623 records, 4 fields): 33 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 08:08:39: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 08:09:02: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX3945496/SRX3945496.20_peaks.xls INFO @ Sat, 03 Apr 2021 08:09:02: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX3945496/SRX3945496.20_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 08:09:02: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX3945496/SRX3945496.20_summits.bed INFO @ Sat, 03 Apr 2021 08:09:02: Done! pass1 - making usageList (8 chroms): 1 millis pass2 - checking and writing primary data (229 records, 4 fields): 2 millis CompletedMACS2peakCalling