Job ID = 12265205 SRX = SRX3945495 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 40424237 spots for SRR7013045/SRR7013045.sra Written 40424237 spots for SRR7013045/SRR7013045.sra fastq に変換しました。 bowtie でマッピング中... Your job 12265572 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:51:26 40424237 reads; of these: 40424237 (100.00%) were paired; of these: 9020519 (22.31%) aligned concordantly 0 times 26103987 (64.58%) aligned concordantly exactly 1 time 5299731 (13.11%) aligned concordantly >1 times ---- 9020519 pairs aligned concordantly 0 times; of these: 2372512 (26.30%) aligned discordantly 1 time ---- 6648007 pairs aligned 0 times concordantly or discordantly; of these: 13296014 mates make up the pairs; of these: 11833557 (89.00%) aligned 0 times 814835 (6.13%) aligned exactly 1 time 647622 (4.87%) aligned >1 times 85.36% overall alignment rate Time searching: 00:51:26 Overall time: 00:51:26 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 28 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 4724722 / 28609669 = 0.1651 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 07:36:04: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX3945495/SRX3945495.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX3945495/SRX3945495.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX3945495/SRX3945495.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX3945495/SRX3945495.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 07:36:04: #1 read tag files... INFO @ Sat, 03 Apr 2021 07:36:04: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 07:36:12: 1000000 INFO @ Sat, 03 Apr 2021 07:36:21: 2000000 INFO @ Sat, 03 Apr 2021 07:36:29: 3000000 WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 07:36:34: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX3945495/SRX3945495.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX3945495/SRX3945495.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX3945495/SRX3945495.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX3945495/SRX3945495.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 07:36:34: #1 read tag files... INFO @ Sat, 03 Apr 2021 07:36:34: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 07:36:38: 4000000 INFO @ Sat, 03 Apr 2021 07:36:43: 1000000 INFO @ Sat, 03 Apr 2021 07:36:47: 5000000 INFO @ Sat, 03 Apr 2021 07:36:52: 2000000 INFO @ Sat, 03 Apr 2021 07:36:56: 6000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 07:37:02: 3000000 INFO @ Sat, 03 Apr 2021 07:37:04: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX3945495/SRX3945495.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX3945495/SRX3945495.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX3945495/SRX3945495.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX3945495/SRX3945495.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 07:37:04: #1 read tag files... INFO @ Sat, 03 Apr 2021 07:37:04: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 07:37:05: 7000000 INFO @ Sat, 03 Apr 2021 07:37:11: 4000000 INFO @ Sat, 03 Apr 2021 07:37:13: 1000000 INFO @ Sat, 03 Apr 2021 07:37:14: 8000000 INFO @ Sat, 03 Apr 2021 07:37:21: 5000000 INFO @ Sat, 03 Apr 2021 07:37:22: 2000000 INFO @ Sat, 03 Apr 2021 07:37:23: 9000000 INFO @ Sat, 03 Apr 2021 07:37:30: 6000000 INFO @ Sat, 03 Apr 2021 07:37:31: 3000000 INFO @ Sat, 03 Apr 2021 07:37:32: 10000000 INFO @ Sat, 03 Apr 2021 07:37:40: 7000000 INFO @ Sat, 03 Apr 2021 07:37:40: 4000000 INFO @ Sat, 03 Apr 2021 07:37:42: 11000000 INFO @ Sat, 03 Apr 2021 07:37:49: 8000000 INFO @ Sat, 03 Apr 2021 07:37:49: 5000000 INFO @ Sat, 03 Apr 2021 07:37:51: 12000000 INFO @ Sat, 03 Apr 2021 07:37:58: 6000000 INFO @ Sat, 03 Apr 2021 07:37:59: 9000000 INFO @ Sat, 03 Apr 2021 07:38:00: 13000000 INFO @ Sat, 03 Apr 2021 07:38:07: 7000000 INFO @ Sat, 03 Apr 2021 07:38:08: 10000000 INFO @ Sat, 03 Apr 2021 07:38:09: 14000000 INFO @ Sat, 03 Apr 2021 07:38:16: 8000000 INFO @ Sat, 03 Apr 2021 07:38:17: 15000000 INFO @ Sat, 03 Apr 2021 07:38:18: 11000000 INFO @ Sat, 03 Apr 2021 07:38:25: 9000000 INFO @ Sat, 03 Apr 2021 07:38:27: 16000000 INFO @ Sat, 03 Apr 2021 07:38:27: 12000000 INFO @ Sat, 03 Apr 2021 07:38:34: 10000000 INFO @ Sat, 03 Apr 2021 07:38:36: 17000000 INFO @ Sat, 03 Apr 2021 07:38:37: 13000000 INFO @ Sat, 03 Apr 2021 07:38:43: 11000000 INFO @ Sat, 03 Apr 2021 07:38:45: 18000000 INFO @ Sat, 03 Apr 2021 07:38:47: 14000000 INFO @ Sat, 03 Apr 2021 07:38:51: 12000000 INFO @ Sat, 03 Apr 2021 07:38:54: 19000000 INFO @ Sat, 03 Apr 2021 07:38:56: 15000000 INFO @ Sat, 03 Apr 2021 07:39:01: 13000000 INFO @ Sat, 03 Apr 2021 07:39:03: 20000000 INFO @ Sat, 03 Apr 2021 07:39:06: 16000000 INFO @ Sat, 03 Apr 2021 07:39:10: 14000000 INFO @ Sat, 03 Apr 2021 07:39:13: 21000000 INFO @ Sat, 03 Apr 2021 07:39:15: 17000000 INFO @ Sat, 03 Apr 2021 07:39:19: 15000000 INFO @ Sat, 03 Apr 2021 07:39:22: 22000000 INFO @ Sat, 03 Apr 2021 07:39:24: 18000000 INFO @ Sat, 03 Apr 2021 07:39:28: 16000000 INFO @ Sat, 03 Apr 2021 07:39:31: 23000000 INFO @ Sat, 03 Apr 2021 07:39:33: 19000000 INFO @ Sat, 03 Apr 2021 07:39:38: 17000000 INFO @ Sat, 03 Apr 2021 07:39:41: 24000000 INFO @ Sat, 03 Apr 2021 07:39:42: 20000000 INFO @ Sat, 03 Apr 2021 07:39:48: 18000000 INFO @ Sat, 03 Apr 2021 07:39:50: 25000000 INFO @ Sat, 03 Apr 2021 07:39:52: 21000000 INFO @ Sat, 03 Apr 2021 07:39:57: 19000000 INFO @ Sat, 03 Apr 2021 07:39:59: 26000000 INFO @ Sat, 03 Apr 2021 07:40:01: 22000000 INFO @ Sat, 03 Apr 2021 07:40:06: 20000000 INFO @ Sat, 03 Apr 2021 07:40:08: 27000000 INFO @ Sat, 03 Apr 2021 07:40:11: 23000000 INFO @ Sat, 03 Apr 2021 07:40:16: 21000000 INFO @ Sat, 03 Apr 2021 07:40:17: 28000000 INFO @ Sat, 03 Apr 2021 07:40:20: 24000000 INFO @ Sat, 03 Apr 2021 07:40:26: 29000000 INFO @ Sat, 03 Apr 2021 07:40:26: 22000000 INFO @ Sat, 03 Apr 2021 07:40:29: 25000000 INFO @ Sat, 03 Apr 2021 07:40:35: 30000000 INFO @ Sat, 03 Apr 2021 07:40:35: 23000000 INFO @ Sat, 03 Apr 2021 07:40:38: 26000000 INFO @ Sat, 03 Apr 2021 07:40:44: 31000000 INFO @ Sat, 03 Apr 2021 07:40:45: 24000000 INFO @ Sat, 03 Apr 2021 07:40:48: 27000000 INFO @ Sat, 03 Apr 2021 07:40:53: 32000000 INFO @ Sat, 03 Apr 2021 07:40:54: 25000000 INFO @ Sat, 03 Apr 2021 07:40:57: 28000000 INFO @ Sat, 03 Apr 2021 07:41:02: 33000000 INFO @ Sat, 03 Apr 2021 07:41:04: 26000000 INFO @ Sat, 03 Apr 2021 07:41:07: 29000000 INFO @ Sat, 03 Apr 2021 07:41:11: 34000000 INFO @ Sat, 03 Apr 2021 07:41:13: 27000000 INFO @ Sat, 03 Apr 2021 07:41:16: 30000000 INFO @ Sat, 03 Apr 2021 07:41:20: 35000000 INFO @ Sat, 03 Apr 2021 07:41:22: 28000000 INFO @ Sat, 03 Apr 2021 07:41:26: 31000000 INFO @ Sat, 03 Apr 2021 07:41:29: 36000000 INFO @ Sat, 03 Apr 2021 07:41:32: 29000000 INFO @ Sat, 03 Apr 2021 07:41:35: 32000000 INFO @ Sat, 03 Apr 2021 07:41:39: 37000000 INFO @ Sat, 03 Apr 2021 07:41:41: 30000000 INFO @ Sat, 03 Apr 2021 07:41:44: 33000000 INFO @ Sat, 03 Apr 2021 07:41:48: 38000000 INFO @ Sat, 03 Apr 2021 07:41:50: 31000000 INFO @ Sat, 03 Apr 2021 07:41:54: 34000000 INFO @ Sat, 03 Apr 2021 07:41:57: 39000000 INFO @ Sat, 03 Apr 2021 07:41:59: 32000000 INFO @ Sat, 03 Apr 2021 07:42:03: 35000000 INFO @ Sat, 03 Apr 2021 07:42:06: 40000000 INFO @ Sat, 03 Apr 2021 07:42:09: 33000000 INFO @ Sat, 03 Apr 2021 07:42:12: 36000000 INFO @ Sat, 03 Apr 2021 07:42:15: 41000000 INFO @ Sat, 03 Apr 2021 07:42:18: 34000000 INFO @ Sat, 03 Apr 2021 07:42:21: 37000000 INFO @ Sat, 03 Apr 2021 07:42:24: 42000000 INFO @ Sat, 03 Apr 2021 07:42:27: 35000000 INFO @ Sat, 03 Apr 2021 07:42:30: 38000000 INFO @ Sat, 03 Apr 2021 07:42:33: 43000000 INFO @ Sat, 03 Apr 2021 07:42:37: 36000000 INFO @ Sat, 03 Apr 2021 07:42:40: 39000000 INFO @ Sat, 03 Apr 2021 07:42:42: 44000000 INFO @ Sat, 03 Apr 2021 07:42:46: 37000000 INFO @ Sat, 03 Apr 2021 07:42:49: 40000000 INFO @ Sat, 03 Apr 2021 07:42:51: 45000000 INFO @ Sat, 03 Apr 2021 07:42:55: 38000000 INFO @ Sat, 03 Apr 2021 07:42:58: 41000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Sat, 03 Apr 2021 07:43:00: 46000000 INFO @ Sat, 03 Apr 2021 07:43:04: 39000000 INFO @ Sat, 03 Apr 2021 07:43:07: 42000000 INFO @ Sat, 03 Apr 2021 07:43:09: 47000000 INFO @ Sat, 03 Apr 2021 07:43:13: 40000000 INFO @ Sat, 03 Apr 2021 07:43:16: 43000000 INFO @ Sat, 03 Apr 2021 07:43:17: 48000000 INFO @ Sat, 03 Apr 2021 07:43:23: 41000000 INFO @ Sat, 03 Apr 2021 07:43:25: 44000000 INFO @ Sat, 03 Apr 2021 07:43:27: 49000000 INFO @ Sat, 03 Apr 2021 07:43:32: 42000000 INFO @ Sat, 03 Apr 2021 07:43:35: 45000000 INFO @ Sat, 03 Apr 2021 07:43:36: 50000000 INFO @ Sat, 03 Apr 2021 07:43:41: 43000000 INFO @ Sat, 03 Apr 2021 07:43:44: 46000000 INFO @ Sat, 03 Apr 2021 07:43:45: 51000000 INFO @ Sat, 03 Apr 2021 07:43:50: 44000000 INFO @ Sat, 03 Apr 2021 07:43:53: 47000000 INFO @ Sat, 03 Apr 2021 07:43:55: 52000000 INFO @ Sat, 03 Apr 2021 07:43:58: 45000000 INFO @ Sat, 03 Apr 2021 07:44:02: 48000000 INFO @ Sat, 03 Apr 2021 07:44:04: 53000000 INFO @ Sat, 03 Apr 2021 07:44:07: 46000000 INFO @ Sat, 03 Apr 2021 07:44:12: 49000000 INFO @ Sat, 03 Apr 2021 07:44:13: 54000000 INFO @ Sat, 03 Apr 2021 07:44:16: 47000000 INFO @ Sat, 03 Apr 2021 07:44:22: 50000000 INFO @ Sat, 03 Apr 2021 07:44:22: 55000000 INFO @ Sat, 03 Apr 2021 07:44:25: 48000000 INFO @ Sat, 03 Apr 2021 07:44:31: 56000000 INFO @ Sat, 03 Apr 2021 07:44:31: 51000000 INFO @ Sat, 03 Apr 2021 07:44:34: 49000000 BigWig に変換しました。 INFO @ Sat, 03 Apr 2021 07:44:40: 57000000 INFO @ Sat, 03 Apr 2021 07:44:41: 52000000 INFO @ Sat, 03 Apr 2021 07:44:43: 50000000 INFO @ Sat, 03 Apr 2021 07:44:49: 58000000 INFO @ Sat, 03 Apr 2021 07:44:50: 53000000 INFO @ Sat, 03 Apr 2021 07:44:53: 51000000 INFO @ Sat, 03 Apr 2021 07:44:58: 59000000 INFO @ Sat, 03 Apr 2021 07:45:00: 54000000 INFO @ Sat, 03 Apr 2021 07:45:02: 52000000 INFO @ Sat, 03 Apr 2021 07:45:03: #1 tag size is determined as 50 bps INFO @ Sat, 03 Apr 2021 07:45:03: #1 tag size = 50 INFO @ Sat, 03 Apr 2021 07:45:03: #1 total tags in treatment: 26826223 INFO @ Sat, 03 Apr 2021 07:45:03: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 07:45:03: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 07:45:04: #1 tags after filtering in treatment: 17585353 INFO @ Sat, 03 Apr 2021 07:45:04: #1 Redundant rate of treatment: 0.34 INFO @ Sat, 03 Apr 2021 07:45:04: #1 finished! INFO @ Sat, 03 Apr 2021 07:45:04: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 07:45:04: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 07:45:06: #2 number of paired peaks: 472 WARNING @ Sat, 03 Apr 2021 07:45:06: Fewer paired peaks (472) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 472 pairs to build model! INFO @ Sat, 03 Apr 2021 07:45:06: start model_add_line... INFO @ Sat, 03 Apr 2021 07:45:06: start X-correlation... INFO @ Sat, 03 Apr 2021 07:45:06: end of X-cor INFO @ Sat, 03 Apr 2021 07:45:06: #2 finished! INFO @ Sat, 03 Apr 2021 07:45:06: #2 predicted fragment length is 22 bps INFO @ Sat, 03 Apr 2021 07:45:06: #2 alternative fragment length(s) may be 4,22 bps INFO @ Sat, 03 Apr 2021 07:45:06: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX3945495/SRX3945495.05_model.r WARNING @ Sat, 03 Apr 2021 07:45:06: #2 Since the d (22) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 07:45:06: #2 You may need to consider one of the other alternative d(s): 4,22 WARNING @ Sat, 03 Apr 2021 07:45:06: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 07:45:06: #3 Call peaks... INFO @ Sat, 03 Apr 2021 07:45:06: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 07:45:10: 55000000 INFO @ Sat, 03 Apr 2021 07:45:11: 53000000 INFO @ Sat, 03 Apr 2021 07:45:19: 56000000 INFO @ Sat, 03 Apr 2021 07:45:20: 54000000 INFO @ Sat, 03 Apr 2021 07:45:28: 57000000 INFO @ Sat, 03 Apr 2021 07:45:30: 55000000 INFO @ Sat, 03 Apr 2021 07:45:37: 58000000 INFO @ Sat, 03 Apr 2021 07:45:39: 56000000 INFO @ Sat, 03 Apr 2021 07:45:47: 59000000 INFO @ Sat, 03 Apr 2021 07:45:48: 57000000 INFO @ Sat, 03 Apr 2021 07:45:50: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 07:45:52: #1 tag size is determined as 50 bps INFO @ Sat, 03 Apr 2021 07:45:52: #1 tag size = 50 INFO @ Sat, 03 Apr 2021 07:45:52: #1 total tags in treatment: 26826223 INFO @ Sat, 03 Apr 2021 07:45:52: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 07:45:52: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 07:45:53: #1 tags after filtering in treatment: 17585353 INFO @ Sat, 03 Apr 2021 07:45:53: #1 Redundant rate of treatment: 0.34 INFO @ Sat, 03 Apr 2021 07:45:53: #1 finished! INFO @ Sat, 03 Apr 2021 07:45:53: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 07:45:53: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 07:45:54: #2 number of paired peaks: 472 WARNING @ Sat, 03 Apr 2021 07:45:54: Fewer paired peaks (472) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 472 pairs to build model! INFO @ Sat, 03 Apr 2021 07:45:54: start model_add_line... INFO @ Sat, 03 Apr 2021 07:45:55: start X-correlation... INFO @ Sat, 03 Apr 2021 07:45:55: end of X-cor INFO @ Sat, 03 Apr 2021 07:45:55: #2 finished! INFO @ Sat, 03 Apr 2021 07:45:55: #2 predicted fragment length is 22 bps INFO @ Sat, 03 Apr 2021 07:45:55: #2 alternative fragment length(s) may be 4,22 bps INFO @ Sat, 03 Apr 2021 07:45:55: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX3945495/SRX3945495.10_model.r WARNING @ Sat, 03 Apr 2021 07:45:55: #2 Since the d (22) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 07:45:55: #2 You may need to consider one of the other alternative d(s): 4,22 WARNING @ Sat, 03 Apr 2021 07:45:55: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 07:45:55: #3 Call peaks... INFO @ Sat, 03 Apr 2021 07:45:55: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 07:45:57: 58000000 INFO @ Sat, 03 Apr 2021 07:46:05: 59000000 INFO @ Sat, 03 Apr 2021 07:46:10: #1 tag size is determined as 50 bps INFO @ Sat, 03 Apr 2021 07:46:10: #1 tag size = 50 INFO @ Sat, 03 Apr 2021 07:46:10: #1 total tags in treatment: 26826223 INFO @ Sat, 03 Apr 2021 07:46:10: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 07:46:10: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 07:46:11: #1 tags after filtering in treatment: 17585353 INFO @ Sat, 03 Apr 2021 07:46:11: #1 Redundant rate of treatment: 0.34 INFO @ Sat, 03 Apr 2021 07:46:11: #1 finished! INFO @ Sat, 03 Apr 2021 07:46:11: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 07:46:11: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 07:46:13: #2 number of paired peaks: 472 WARNING @ Sat, 03 Apr 2021 07:46:13: Fewer paired peaks (472) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 472 pairs to build model! INFO @ Sat, 03 Apr 2021 07:46:13: start model_add_line... INFO @ Sat, 03 Apr 2021 07:46:13: start X-correlation... INFO @ Sat, 03 Apr 2021 07:46:13: end of X-cor INFO @ Sat, 03 Apr 2021 07:46:13: #2 finished! INFO @ Sat, 03 Apr 2021 07:46:13: #2 predicted fragment length is 22 bps INFO @ Sat, 03 Apr 2021 07:46:13: #2 alternative fragment length(s) may be 4,22 bps INFO @ Sat, 03 Apr 2021 07:46:13: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX3945495/SRX3945495.20_model.r WARNING @ Sat, 03 Apr 2021 07:46:13: #2 Since the d (22) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 07:46:13: #2 You may need to consider one of the other alternative d(s): 4,22 WARNING @ Sat, 03 Apr 2021 07:46:13: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 07:46:13: #3 Call peaks... INFO @ Sat, 03 Apr 2021 07:46:13: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 07:46:15: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX3945495/SRX3945495.05_peaks.xls INFO @ Sat, 03 Apr 2021 07:46:15: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX3945495/SRX3945495.05_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 07:46:15: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX3945495/SRX3945495.05_summits.bed INFO @ Sat, 03 Apr 2021 07:46:15: Done! pass1 - making usageList (15 chroms): 8 millis pass2 - checking and writing primary data (16796 records, 4 fields): 24 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 07:46:38: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 07:46:57: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 07:47:02: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX3945495/SRX3945495.10_peaks.xls INFO @ Sat, 03 Apr 2021 07:47:02: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX3945495/SRX3945495.10_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 07:47:02: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX3945495/SRX3945495.10_summits.bed INFO @ Sat, 03 Apr 2021 07:47:02: Done! pass1 - making usageList (12 chroms): 2 millis pass2 - checking and writing primary data (2158 records, 4 fields): 7 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 07:47:22: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX3945495/SRX3945495.20_peaks.xls INFO @ Sat, 03 Apr 2021 07:47:22: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX3945495/SRX3945495.20_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 07:47:22: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX3945495/SRX3945495.20_summits.bed INFO @ Sat, 03 Apr 2021 07:47:22: Done! pass1 - making usageList (1 chroms): 1 millis pass2 - checking and writing primary data (1 records, 4 fields): 1 millis CompletedMACS2peakCalling