Job ID = 2590323 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... spots read : 142,823,755 reads read : 142,823,755 reads written : 142,823,755 rm: cannot remove ‘[DSE]RR*’: No such file or directory rm: cannot remove ‘/home/okishinya/ncbi/public/sra/SRR1020538.sra.cache’: No such file or directory fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:47:43 142823755 reads; of these: 142823755 (100.00%) were unpaired; of these: 31354634 (21.95%) aligned 0 times 101484038 (71.06%) aligned exactly 1 time 9985083 (6.99%) aligned >1 times 78.05% overall alignment rate Time searching: 00:47:43 Overall time: 00:47:43 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 48 files... [bam_rmdupse_core] 62065681 / 111469121 = 0.5568 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Mon, 12 Aug 2019 22:14:20: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX370359/SRX370359.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX370359/SRX370359.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX370359/SRX370359.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX370359/SRX370359.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Mon, 12 Aug 2019 22:14:20: #1 read tag files... INFO @ Mon, 12 Aug 2019 22:14:20: #1 read treatment tags... INFO @ Mon, 12 Aug 2019 22:14:21: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX370359/SRX370359.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX370359/SRX370359.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX370359/SRX370359.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX370359/SRX370359.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Mon, 12 Aug 2019 22:14:21: #1 read tag files... INFO @ Mon, 12 Aug 2019 22:14:21: #1 read treatment tags... INFO @ Mon, 12 Aug 2019 22:14:22: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX370359/SRX370359.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX370359/SRX370359.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX370359/SRX370359.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX370359/SRX370359.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Mon, 12 Aug 2019 22:14:22: #1 read tag files... INFO @ Mon, 12 Aug 2019 22:14:22: #1 read treatment tags... INFO @ Mon, 12 Aug 2019 22:14:28: 1000000 INFO @ Mon, 12 Aug 2019 22:14:29: 1000000 INFO @ Mon, 12 Aug 2019 22:14:30: 1000000 INFO @ Mon, 12 Aug 2019 22:14:36: 2000000 INFO @ Mon, 12 Aug 2019 22:14:37: 2000000 INFO @ Mon, 12 Aug 2019 22:14:37: 2000000 INFO @ Mon, 12 Aug 2019 22:14:43: 3000000 INFO @ Mon, 12 Aug 2019 22:14:44: 3000000 INFO @ Mon, 12 Aug 2019 22:14:44: 3000000 INFO @ Mon, 12 Aug 2019 22:14:51: 4000000 INFO @ Mon, 12 Aug 2019 22:14:51: 4000000 INFO @ Mon, 12 Aug 2019 22:14:52: 4000000 INFO @ Mon, 12 Aug 2019 22:14:58: 5000000 INFO @ Mon, 12 Aug 2019 22:14:59: 5000000 INFO @ Mon, 12 Aug 2019 22:15:00: 5000000 INFO @ Mon, 12 Aug 2019 22:15:05: 6000000 INFO @ Mon, 12 Aug 2019 22:15:06: 6000000 INFO @ Mon, 12 Aug 2019 22:15:07: 6000000 INFO @ Mon, 12 Aug 2019 22:15:12: 7000000 INFO @ Mon, 12 Aug 2019 22:15:14: 7000000 INFO @ Mon, 12 Aug 2019 22:15:15: 7000000 INFO @ Mon, 12 Aug 2019 22:15:19: 8000000 INFO @ Mon, 12 Aug 2019 22:15:21: 8000000 INFO @ Mon, 12 Aug 2019 22:15:22: 8000000 INFO @ Mon, 12 Aug 2019 22:15:26: 9000000 INFO @ Mon, 12 Aug 2019 22:15:29: 9000000 INFO @ Mon, 12 Aug 2019 22:15:30: 9000000 INFO @ Mon, 12 Aug 2019 22:15:33: 10000000 INFO @ Mon, 12 Aug 2019 22:15:36: 10000000 INFO @ Mon, 12 Aug 2019 22:15:38: 10000000 INFO @ Mon, 12 Aug 2019 22:15:40: 11000000 INFO @ Mon, 12 Aug 2019 22:15:44: 11000000 INFO @ Mon, 12 Aug 2019 22:15:45: 11000000 INFO @ Mon, 12 Aug 2019 22:15:48: 12000000 INFO @ Mon, 12 Aug 2019 22:15:52: 12000000 INFO @ Mon, 12 Aug 2019 22:15:53: 12000000 INFO @ Mon, 12 Aug 2019 22:15:55: 13000000 INFO @ Mon, 12 Aug 2019 22:15:59: 13000000 INFO @ Mon, 12 Aug 2019 22:16:01: 13000000 INFO @ Mon, 12 Aug 2019 22:16:02: 14000000 INFO @ Mon, 12 Aug 2019 22:16:07: 14000000 INFO @ Mon, 12 Aug 2019 22:16:08: 14000000 INFO @ Mon, 12 Aug 2019 22:16:09: 15000000 INFO @ Mon, 12 Aug 2019 22:16:14: 15000000 INFO @ Mon, 12 Aug 2019 22:16:16: 15000000 INFO @ Mon, 12 Aug 2019 22:16:16: 16000000 INFO @ Mon, 12 Aug 2019 22:16:22: 16000000 INFO @ Mon, 12 Aug 2019 22:16:23: 17000000 INFO @ Mon, 12 Aug 2019 22:16:23: 16000000 INFO @ Mon, 12 Aug 2019 22:16:29: 17000000 INFO @ Mon, 12 Aug 2019 22:16:30: 18000000 INFO @ Mon, 12 Aug 2019 22:16:31: 17000000 INFO @ Mon, 12 Aug 2019 22:16:37: 18000000 INFO @ Mon, 12 Aug 2019 22:16:37: 19000000 INFO @ Mon, 12 Aug 2019 22:16:38: 18000000 INFO @ Mon, 12 Aug 2019 22:16:44: 20000000 INFO @ Mon, 12 Aug 2019 22:16:44: 19000000 INFO @ Mon, 12 Aug 2019 22:16:46: 19000000 INFO @ Mon, 12 Aug 2019 22:16:51: 21000000 INFO @ Mon, 12 Aug 2019 22:16:52: 20000000 INFO @ Mon, 12 Aug 2019 22:16:54: 20000000 INFO @ Mon, 12 Aug 2019 22:16:58: 22000000 INFO @ Mon, 12 Aug 2019 22:17:00: 21000000 INFO @ Mon, 12 Aug 2019 22:17:01: 21000000 INFO @ Mon, 12 Aug 2019 22:17:05: 23000000 INFO @ Mon, 12 Aug 2019 22:17:07: 22000000 INFO @ Mon, 12 Aug 2019 22:17:09: 22000000 INFO @ Mon, 12 Aug 2019 22:17:12: 24000000 INFO @ Mon, 12 Aug 2019 22:17:15: 23000000 INFO @ Mon, 12 Aug 2019 22:17:16: 23000000 INFO @ Mon, 12 Aug 2019 22:17:19: 25000000 INFO @ Mon, 12 Aug 2019 22:17:22: 24000000 INFO @ Mon, 12 Aug 2019 22:17:24: 24000000 INFO @ Mon, 12 Aug 2019 22:17:26: 26000000 INFO @ Mon, 12 Aug 2019 22:17:30: 25000000 INFO @ Mon, 12 Aug 2019 22:17:31: 25000000 INFO @ Mon, 12 Aug 2019 22:17:34: 27000000 INFO @ Mon, 12 Aug 2019 22:17:37: 26000000 INFO @ Mon, 12 Aug 2019 22:17:39: 26000000 INFO @ Mon, 12 Aug 2019 22:17:41: 28000000 INFO @ Mon, 12 Aug 2019 22:17:45: 27000000 INFO @ Mon, 12 Aug 2019 22:17:47: 27000000 INFO @ Mon, 12 Aug 2019 22:17:48: 29000000 INFO @ Mon, 12 Aug 2019 22:17:52: 28000000 INFO @ Mon, 12 Aug 2019 22:17:54: 28000000 INFO @ Mon, 12 Aug 2019 22:17:55: 30000000 INFO @ Mon, 12 Aug 2019 22:18:00: 29000000 INFO @ Mon, 12 Aug 2019 22:18:02: 31000000 INFO @ Mon, 12 Aug 2019 22:18:02: 29000000 INFO @ Mon, 12 Aug 2019 22:18:07: 30000000 INFO @ Mon, 12 Aug 2019 22:18:09: 32000000 INFO @ Mon, 12 Aug 2019 22:18:09: 30000000 INFO @ Mon, 12 Aug 2019 22:18:15: 31000000 INFO @ Mon, 12 Aug 2019 22:18:16: 33000000 INFO @ Mon, 12 Aug 2019 22:18:17: 31000000 INFO @ Mon, 12 Aug 2019 22:18:22: 32000000 INFO @ Mon, 12 Aug 2019 22:18:23: 34000000 INFO @ Mon, 12 Aug 2019 22:18:24: 32000000 INFO @ Mon, 12 Aug 2019 22:18:30: 35000000 INFO @ Mon, 12 Aug 2019 22:18:30: 33000000 INFO @ Mon, 12 Aug 2019 22:18:32: 33000000 INFO @ Mon, 12 Aug 2019 22:18:37: 36000000 INFO @ Mon, 12 Aug 2019 22:18:38: 34000000 INFO @ Mon, 12 Aug 2019 22:18:40: 34000000 INFO @ Mon, 12 Aug 2019 22:18:44: 37000000 INFO @ Mon, 12 Aug 2019 22:18:45: 35000000 INFO @ Mon, 12 Aug 2019 22:18:47: 35000000 INFO @ Mon, 12 Aug 2019 22:18:51: 38000000 INFO @ Mon, 12 Aug 2019 22:18:53: 36000000 INFO @ Mon, 12 Aug 2019 22:18:55: 36000000 INFO @ Mon, 12 Aug 2019 22:18:58: 39000000 INFO @ Mon, 12 Aug 2019 22:19:00: 37000000 INFO @ Mon, 12 Aug 2019 22:19:02: 37000000 INFO @ Mon, 12 Aug 2019 22:19:05: 40000000 INFO @ Mon, 12 Aug 2019 22:19:08: 38000000 INFO @ Mon, 12 Aug 2019 22:19:10: 38000000 INFO @ Mon, 12 Aug 2019 22:19:13: 41000000 INFO @ Mon, 12 Aug 2019 22:19:16: 39000000 INFO @ Mon, 12 Aug 2019 22:19:18: 39000000 INFO @ Mon, 12 Aug 2019 22:19:20: 42000000 INFO @ Mon, 12 Aug 2019 22:19:23: 40000000 INFO @ Mon, 12 Aug 2019 22:19:25: 40000000 INFO @ Mon, 12 Aug 2019 22:19:27: 43000000 INFO @ Mon, 12 Aug 2019 22:19:31: 41000000 INFO @ Mon, 12 Aug 2019 22:19:33: 41000000 INFO @ Mon, 12 Aug 2019 22:19:34: 44000000 INFO @ Mon, 12 Aug 2019 22:19:38: 42000000 INFO @ Mon, 12 Aug 2019 22:19:41: 42000000 INFO @ Mon, 12 Aug 2019 22:19:41: 45000000 INFO @ Mon, 12 Aug 2019 22:19:46: 43000000 INFO @ Mon, 12 Aug 2019 22:19:48: 46000000 INFO @ Mon, 12 Aug 2019 22:19:48: 43000000 INFO @ Mon, 12 Aug 2019 22:19:53: 44000000 INFO @ Mon, 12 Aug 2019 22:19:55: 47000000 INFO @ Mon, 12 Aug 2019 22:19:56: 44000000 INFO @ Mon, 12 Aug 2019 22:20:01: 45000000 INFO @ Mon, 12 Aug 2019 22:20:02: 48000000 INFO @ Mon, 12 Aug 2019 22:20:03: 45000000 INFO @ Mon, 12 Aug 2019 22:20:09: 46000000 INFO @ Mon, 12 Aug 2019 22:20:09: 49000000 INFO @ Mon, 12 Aug 2019 22:20:11: 46000000 INFO @ Mon, 12 Aug 2019 22:20:13: #1 tag size is determined as 76 bps INFO @ Mon, 12 Aug 2019 22:20:13: #1 tag size = 76 INFO @ Mon, 12 Aug 2019 22:20:13: #1 total tags in treatment: 49403440 INFO @ Mon, 12 Aug 2019 22:20:13: #1 user defined the maximum tags... INFO @ Mon, 12 Aug 2019 22:20:13: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Mon, 12 Aug 2019 22:20:14: #1 tags after filtering in treatment: 49403440 INFO @ Mon, 12 Aug 2019 22:20:14: #1 Redundant rate of treatment: 0.00 INFO @ Mon, 12 Aug 2019 22:20:14: #1 finished! INFO @ Mon, 12 Aug 2019 22:20:14: #2 Build Peak Model... INFO @ Mon, 12 Aug 2019 22:20:14: #2 looking for paired plus/minus strand peaks... INFO @ Mon, 12 Aug 2019 22:20:16: 47000000 INFO @ Mon, 12 Aug 2019 22:20:18: #2 number of paired peaks: 0 WARNING @ Mon, 12 Aug 2019 22:20:18: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Mon, 12 Aug 2019 22:20:18: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/dm3/SRX370359/SRX370359.20_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/dm3/SRX370359/SRX370359.20_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/dm3/SRX370359/SRX370359.20_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/dm3/SRX370359/SRX370359.20_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling INFO @ Mon, 12 Aug 2019 22:20:18: 47000000 INFO @ Mon, 12 Aug 2019 22:20:24: 48000000 INFO @ Mon, 12 Aug 2019 22:20:26: 48000000 INFO @ Mon, 12 Aug 2019 22:20:31: 49000000 INFO @ Mon, 12 Aug 2019 22:20:34: 49000000 INFO @ Mon, 12 Aug 2019 22:20:35: #1 tag size is determined as 76 bps INFO @ Mon, 12 Aug 2019 22:20:35: #1 tag size = 76 INFO @ Mon, 12 Aug 2019 22:20:35: #1 total tags in treatment: 49403440 INFO @ Mon, 12 Aug 2019 22:20:35: #1 user defined the maximum tags... INFO @ Mon, 12 Aug 2019 22:20:35: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Mon, 12 Aug 2019 22:20:36: #1 tags after filtering in treatment: 49403440 INFO @ Mon, 12 Aug 2019 22:20:36: #1 Redundant rate of treatment: 0.00 INFO @ Mon, 12 Aug 2019 22:20:36: #1 finished! INFO @ Mon, 12 Aug 2019 22:20:36: #2 Build Peak Model... INFO @ Mon, 12 Aug 2019 22:20:36: #2 looking for paired plus/minus strand peaks... INFO @ Mon, 12 Aug 2019 22:20:37: #1 tag size is determined as 76 bps INFO @ Mon, 12 Aug 2019 22:20:37: #1 tag size = 76 INFO @ Mon, 12 Aug 2019 22:20:37: #1 total tags in treatment: 49403440 INFO @ Mon, 12 Aug 2019 22:20:37: #1 user defined the maximum tags... INFO @ Mon, 12 Aug 2019 22:20:37: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Mon, 12 Aug 2019 22:20:38: #1 tags after filtering in treatment: 49403440 INFO @ Mon, 12 Aug 2019 22:20:38: #1 Redundant rate of treatment: 0.00 INFO @ Mon, 12 Aug 2019 22:20:38: #1 finished! INFO @ Mon, 12 Aug 2019 22:20:38: #2 Build Peak Model... INFO @ Mon, 12 Aug 2019 22:20:38: #2 looking for paired plus/minus strand peaks... INFO @ Mon, 12 Aug 2019 22:20:40: #2 number of paired peaks: 0 WARNING @ Mon, 12 Aug 2019 22:20:40: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Mon, 12 Aug 2019 22:20:40: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/dm3/SRX370359/SRX370359.05_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/dm3/SRX370359/SRX370359.05_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/dm3/SRX370359/SRX370359.05_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/dm3/SRX370359/SRX370359.05_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling INFO @ Mon, 12 Aug 2019 22:20:42: #2 number of paired peaks: 0 WARNING @ Mon, 12 Aug 2019 22:20:42: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Mon, 12 Aug 2019 22:20:42: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/dm3/SRX370359/SRX370359.10_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 2 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/dm3/SRX370359/SRX370359.10_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/dm3/SRX370359/SRX370359.10_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/dm3/SRX370359/SRX370359.10_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。