Job ID = 1295465 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2019-06-03T04:51:15 fasterq-dump.2.9.6 sys: connection not found while validating within network system module - Failed to Make Connection in KClientHttpOpen to 'sra-download-internal.ncbi.nlm.nih.gov:443' 2019-06-03T04:51:15 fasterq-dump.2.9.6 err: connection not found while validating within network system module - error with https open 'https://sra-download-internal.ncbi.nlm.nih.gov/sos/sra-pub-run-1/SRR6292557/SRR6292557.1' 2019-06-03T04:51:15 fasterq-dump.2.9.6 err: cmn_iter.c cmn_get_acc_type( 'SRR6292557', 'SEQUENCE', 'NAME' ).VDBManagerOpenDBRead() -> RC(rcNS,rcNoTarg,rcValidating,rcConnection,rcNotFound) 2019-06-03T04:51:20 fasterq-dump.2.9.6 sys: connection not found while validating within network system module - Failed to Make Connection in KClientHttpOpen to 'sra-download-internal.ncbi.nlm.nih.gov:443' 2019-06-03T04:51:20 fasterq-dump.2.9.6 err: connection not found while validating within network system module - error with https open 'https://sra-download-internal.ncbi.nlm.nih.gov/sos/sra-pub-run-1/SRR6292557/SRR6292557.1' 2019-06-03T04:51:20 fasterq-dump.2.9.6 err: invalid accession 'SRR6292557' spots read : 30,714,364 reads read : 61,428,728 reads written : 61,428,728 rm: cannot remove ‘[DSE]RR*’: No such file or directory rm: cannot remove ‘fastqDump_tmp*’: No such file or directory fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:15:27 30714364 reads; of these: 30714364 (100.00%) were paired; of these: 4625753 (15.06%) aligned concordantly 0 times 19131106 (62.29%) aligned concordantly exactly 1 time 6957505 (22.65%) aligned concordantly >1 times ---- 4625753 pairs aligned concordantly 0 times; of these: 295844 (6.40%) aligned discordantly 1 time ---- 4329909 pairs aligned 0 times concordantly or discordantly; of these: 8659818 mates make up the pairs; of these: 6455063 (74.54%) aligned 0 times 971264 (11.22%) aligned exactly 1 time 1233491 (14.24%) aligned >1 times 89.49% overall alignment rate Time searching: 01:15:27 Overall time: 01:15:27 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 20 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 2142182 / 26357780 = 0.0813 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Mon, 03 Jun 2019 15:38:09: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX3393668/SRX3393668.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX3393668/SRX3393668.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX3393668/SRX3393668.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX3393668/SRX3393668.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Mon, 03 Jun 2019 15:38:09: #1 read tag files... INFO @ Mon, 03 Jun 2019 15:38:09: #1 read treatment tags... INFO @ Mon, 03 Jun 2019 15:38:09: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX3393668/SRX3393668.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX3393668/SRX3393668.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX3393668/SRX3393668.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX3393668/SRX3393668.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Mon, 03 Jun 2019 15:38:09: #1 read tag files... INFO @ Mon, 03 Jun 2019 15:38:09: #1 read treatment tags... INFO @ Mon, 03 Jun 2019 15:38:09: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX3393668/SRX3393668.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX3393668/SRX3393668.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX3393668/SRX3393668.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX3393668/SRX3393668.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Mon, 03 Jun 2019 15:38:09: #1 read tag files... INFO @ Mon, 03 Jun 2019 15:38:09: #1 read treatment tags... INFO @ Mon, 03 Jun 2019 15:38:15: 1000000 INFO @ Mon, 03 Jun 2019 15:38:17: 1000000 INFO @ Mon, 03 Jun 2019 15:38:17: 1000000 INFO @ Mon, 03 Jun 2019 15:38:21: 2000000 INFO @ Mon, 03 Jun 2019 15:38:24: 2000000 INFO @ Mon, 03 Jun 2019 15:38:26: 2000000 INFO @ Mon, 03 Jun 2019 15:38:27: 3000000 INFO @ Mon, 03 Jun 2019 15:38:32: 3000000 INFO @ Mon, 03 Jun 2019 15:38:34: 4000000 INFO @ Mon, 03 Jun 2019 15:38:35: 3000000 INFO @ Mon, 03 Jun 2019 15:38:40: 4000000 INFO @ Mon, 03 Jun 2019 15:38:40: 5000000 INFO @ Mon, 03 Jun 2019 15:38:44: 4000000 INFO @ Mon, 03 Jun 2019 15:38:46: 6000000 INFO @ Mon, 03 Jun 2019 15:38:47: 5000000 INFO @ Mon, 03 Jun 2019 15:38:52: 7000000 INFO @ Mon, 03 Jun 2019 15:38:53: 5000000 INFO @ Mon, 03 Jun 2019 15:38:54: 6000000 INFO @ Mon, 03 Jun 2019 15:38:59: 8000000 INFO @ Mon, 03 Jun 2019 15:39:01: 6000000 INFO @ Mon, 03 Jun 2019 15:39:02: 7000000 INFO @ Mon, 03 Jun 2019 15:39:05: 9000000 INFO @ Mon, 03 Jun 2019 15:39:09: 7000000 INFO @ Mon, 03 Jun 2019 15:39:10: 8000000 INFO @ Mon, 03 Jun 2019 15:39:11: 10000000 INFO @ Mon, 03 Jun 2019 15:39:17: 11000000 INFO @ Mon, 03 Jun 2019 15:39:18: 9000000 INFO @ Mon, 03 Jun 2019 15:39:18: 8000000 INFO @ Mon, 03 Jun 2019 15:39:23: 12000000 INFO @ Mon, 03 Jun 2019 15:39:25: 10000000 INFO @ Mon, 03 Jun 2019 15:39:27: 9000000 INFO @ Mon, 03 Jun 2019 15:39:29: 13000000 INFO @ Mon, 03 Jun 2019 15:39:33: 11000000 INFO @ Mon, 03 Jun 2019 15:39:36: 10000000 INFO @ Mon, 03 Jun 2019 15:39:36: 14000000 INFO @ Mon, 03 Jun 2019 15:39:41: 12000000 INFO @ Mon, 03 Jun 2019 15:39:42: 15000000 INFO @ Mon, 03 Jun 2019 15:39:44: 11000000 INFO @ Mon, 03 Jun 2019 15:39:48: 13000000 INFO @ Mon, 03 Jun 2019 15:39:49: 16000000 INFO @ Mon, 03 Jun 2019 15:39:53: 12000000 INFO @ Mon, 03 Jun 2019 15:39:55: 17000000 INFO @ Mon, 03 Jun 2019 15:39:56: 14000000 INFO @ Mon, 03 Jun 2019 15:40:01: 13000000 INFO @ Mon, 03 Jun 2019 15:40:01: 18000000 INFO @ Mon, 03 Jun 2019 15:40:03: 15000000 INFO @ Mon, 03 Jun 2019 15:40:07: 19000000 INFO @ Mon, 03 Jun 2019 15:40:09: 14000000 INFO @ Mon, 03 Jun 2019 15:40:10: 16000000 INFO @ Mon, 03 Jun 2019 15:40:13: 20000000 INFO @ Mon, 03 Jun 2019 15:40:18: 15000000 INFO @ Mon, 03 Jun 2019 15:40:18: 17000000 INFO @ Mon, 03 Jun 2019 15:40:19: 21000000 INFO @ Mon, 03 Jun 2019 15:40:25: 22000000 INFO @ Mon, 03 Jun 2019 15:40:25: 18000000 INFO @ Mon, 03 Jun 2019 15:40:25: 16000000 INFO @ Mon, 03 Jun 2019 15:40:31: 23000000 INFO @ Mon, 03 Jun 2019 15:40:32: 19000000 INFO @ Mon, 03 Jun 2019 15:40:33: 17000000 INFO @ Mon, 03 Jun 2019 15:40:37: 24000000 INFO @ Mon, 03 Jun 2019 15:40:40: 20000000 INFO @ Mon, 03 Jun 2019 15:40:41: 18000000 INFO @ Mon, 03 Jun 2019 15:40:43: 25000000 INFO @ Mon, 03 Jun 2019 15:40:47: 21000000 INFO @ Mon, 03 Jun 2019 15:40:49: 19000000 INFO @ Mon, 03 Jun 2019 15:40:49: 26000000 INFO @ Mon, 03 Jun 2019 15:40:54: 22000000 INFO @ Mon, 03 Jun 2019 15:40:55: 27000000 INFO @ Mon, 03 Jun 2019 15:40:57: 20000000 INFO @ Mon, 03 Jun 2019 15:41:01: 28000000 INFO @ Mon, 03 Jun 2019 15:41:02: 23000000 INFO @ Mon, 03 Jun 2019 15:41:04: 21000000 INFO @ Mon, 03 Jun 2019 15:41:07: 29000000 INFO @ Mon, 03 Jun 2019 15:41:09: 24000000 INFO @ Mon, 03 Jun 2019 15:41:12: 22000000 INFO @ Mon, 03 Jun 2019 15:41:13: 30000000 INFO @ Mon, 03 Jun 2019 15:41:16: 25000000 INFO @ Mon, 03 Jun 2019 15:41:19: 31000000 INFO @ Mon, 03 Jun 2019 15:41:19: 23000000 INFO @ Mon, 03 Jun 2019 15:41:23: 26000000 INFO @ Mon, 03 Jun 2019 15:41:25: 32000000 INFO @ Mon, 03 Jun 2019 15:41:27: 24000000 INFO @ Mon, 03 Jun 2019 15:41:31: 27000000 INFO @ Mon, 03 Jun 2019 15:41:32: 33000000 INFO @ Mon, 03 Jun 2019 15:41:34: 25000000 INFO @ Mon, 03 Jun 2019 15:41:38: 34000000 INFO @ Mon, 03 Jun 2019 15:41:38: 28000000 INFO @ Mon, 03 Jun 2019 15:41:42: 26000000 INFO @ Mon, 03 Jun 2019 15:41:44: 35000000 INFO @ Mon, 03 Jun 2019 15:41:45: 29000000 INFO @ Mon, 03 Jun 2019 15:41:50: 36000000 INFO @ Mon, 03 Jun 2019 15:41:50: 27000000 INFO @ Mon, 03 Jun 2019 15:41:51: 30000000 INFO @ Mon, 03 Jun 2019 15:41:56: 37000000 INFO @ Mon, 03 Jun 2019 15:41:58: 28000000 INFO @ Mon, 03 Jun 2019 15:41:59: 31000000 INFO @ Mon, 03 Jun 2019 15:42:02: 38000000 INFO @ Mon, 03 Jun 2019 15:42:05: 29000000 INFO @ Mon, 03 Jun 2019 15:42:07: 32000000 INFO @ Mon, 03 Jun 2019 15:42:08: 39000000 INFO @ Mon, 03 Jun 2019 15:42:13: 30000000 INFO @ Mon, 03 Jun 2019 15:42:14: 33000000 INFO @ Mon, 03 Jun 2019 15:42:15: 40000000 INFO @ Mon, 03 Jun 2019 15:42:21: 41000000 INFO @ Mon, 03 Jun 2019 15:42:21: 31000000 INFO @ Mon, 03 Jun 2019 15:42:22: 34000000 INFO @ Mon, 03 Jun 2019 15:42:27: 42000000 INFO @ Mon, 03 Jun 2019 15:42:29: 32000000 INFO @ Mon, 03 Jun 2019 15:42:29: 35000000 INFO @ Mon, 03 Jun 2019 15:42:33: 43000000 INFO @ Mon, 03 Jun 2019 15:42:36: 36000000 INFO @ Mon, 03 Jun 2019 15:42:37: 33000000 INFO @ Mon, 03 Jun 2019 15:42:39: 44000000 INFO @ Mon, 03 Jun 2019 15:42:44: 37000000 INFO @ Mon, 03 Jun 2019 15:42:44: 34000000 INFO @ Mon, 03 Jun 2019 15:42:45: 45000000 INFO @ Mon, 03 Jun 2019 15:42:51: 46000000 INFO @ Mon, 03 Jun 2019 15:42:51: 38000000 INFO @ Mon, 03 Jun 2019 15:42:52: 35000000 INFO @ Mon, 03 Jun 2019 15:42:57: 47000000 INFO @ Mon, 03 Jun 2019 15:42:59: 39000000 INFO @ Mon, 03 Jun 2019 15:43:00: 36000000 INFO @ Mon, 03 Jun 2019 15:43:03: 48000000 INFO @ Mon, 03 Jun 2019 15:43:06: 40000000 INFO @ Mon, 03 Jun 2019 15:43:08: 37000000 INFO @ Mon, 03 Jun 2019 15:43:09: 49000000 INFO @ Mon, 03 Jun 2019 15:43:13: 41000000 INFO @ Mon, 03 Jun 2019 15:43:15: 50000000 INFO @ Mon, 03 Jun 2019 15:43:16: 38000000 INFO @ Mon, 03 Jun 2019 15:43:20: #1 tag size is determined as 42 bps INFO @ Mon, 03 Jun 2019 15:43:20: #1 tag size = 42 INFO @ Mon, 03 Jun 2019 15:43:20: #1 total tags in treatment: 23953314 INFO @ Mon, 03 Jun 2019 15:43:20: #1 user defined the maximum tags... INFO @ Mon, 03 Jun 2019 15:43:20: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Mon, 03 Jun 2019 15:43:20: 42000000 INFO @ Mon, 03 Jun 2019 15:43:20: #1 tags after filtering in treatment: 13683021 INFO @ Mon, 03 Jun 2019 15:43:20: #1 Redundant rate of treatment: 0.43 INFO @ Mon, 03 Jun 2019 15:43:20: #1 finished! INFO @ Mon, 03 Jun 2019 15:43:20: #2 Build Peak Model... INFO @ Mon, 03 Jun 2019 15:43:20: #2 looking for paired plus/minus strand peaks... INFO @ Mon, 03 Jun 2019 15:43:22: #2 number of paired peaks: 8022 INFO @ Mon, 03 Jun 2019 15:43:22: start model_add_line... INFO @ Mon, 03 Jun 2019 15:43:23: start X-correlation... INFO @ Mon, 03 Jun 2019 15:43:23: end of X-cor INFO @ Mon, 03 Jun 2019 15:43:23: #2 finished! INFO @ Mon, 03 Jun 2019 15:43:23: #2 predicted fragment length is 218 bps INFO @ Mon, 03 Jun 2019 15:43:23: #2 alternative fragment length(s) may be 218 bps INFO @ Mon, 03 Jun 2019 15:43:23: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX3393668/SRX3393668.05_model.r INFO @ Mon, 03 Jun 2019 15:43:23: #3 Call peaks... INFO @ Mon, 03 Jun 2019 15:43:23: #3 Pre-compute pvalue-qvalue table... INFO @ Mon, 03 Jun 2019 15:43:24: 39000000 INFO @ Mon, 03 Jun 2019 15:43:29: 43000000 INFO @ Mon, 03 Jun 2019 15:43:32: 40000000 INFO @ Mon, 03 Jun 2019 15:43:36: 44000000 INFO @ Mon, 03 Jun 2019 15:43:40: 41000000 INFO @ Mon, 03 Jun 2019 15:43:42: 45000000 INFO @ Mon, 03 Jun 2019 15:43:49: 42000000 INFO @ Mon, 03 Jun 2019 15:43:50: 46000000 INFO @ Mon, 03 Jun 2019 15:43:57: 47000000 INFO @ Mon, 03 Jun 2019 15:43:57: 43000000 INFO @ Mon, 03 Jun 2019 15:44:04: 48000000 INFO @ Mon, 03 Jun 2019 15:44:05: 44000000 INFO @ Mon, 03 Jun 2019 15:44:11: 49000000 INFO @ Mon, 03 Jun 2019 15:44:13: 45000000 INFO @ Mon, 03 Jun 2019 15:44:18: 50000000 INFO @ Mon, 03 Jun 2019 15:44:19: #3 Call peaks for each chromosome... INFO @ Mon, 03 Jun 2019 15:44:21: 46000000 INFO @ Mon, 03 Jun 2019 15:44:23: #1 tag size is determined as 42 bps INFO @ Mon, 03 Jun 2019 15:44:23: #1 tag size = 42 INFO @ Mon, 03 Jun 2019 15:44:23: #1 total tags in treatment: 23953314 INFO @ Mon, 03 Jun 2019 15:44:23: #1 user defined the maximum tags... INFO @ Mon, 03 Jun 2019 15:44:23: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Mon, 03 Jun 2019 15:44:24: #1 tags after filtering in treatment: 13683021 INFO @ Mon, 03 Jun 2019 15:44:24: #1 Redundant rate of treatment: 0.43 INFO @ Mon, 03 Jun 2019 15:44:24: #1 finished! INFO @ Mon, 03 Jun 2019 15:44:24: #2 Build Peak Model... INFO @ Mon, 03 Jun 2019 15:44:24: #2 looking for paired plus/minus strand peaks... INFO @ Mon, 03 Jun 2019 15:44:26: #2 number of paired peaks: 8022 INFO @ Mon, 03 Jun 2019 15:44:26: start model_add_line... INFO @ Mon, 03 Jun 2019 15:44:26: start X-correlation... INFO @ Mon, 03 Jun 2019 15:44:26: end of X-cor INFO @ Mon, 03 Jun 2019 15:44:26: #2 finished! INFO @ Mon, 03 Jun 2019 15:44:26: #2 predicted fragment length is 218 bps INFO @ Mon, 03 Jun 2019 15:44:26: #2 alternative fragment length(s) may be 218 bps INFO @ Mon, 03 Jun 2019 15:44:26: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX3393668/SRX3393668.10_model.r INFO @ Mon, 03 Jun 2019 15:44:26: #3 Call peaks... INFO @ Mon, 03 Jun 2019 15:44:26: #3 Pre-compute pvalue-qvalue table... INFO @ Mon, 03 Jun 2019 15:44:30: 47000000 INFO @ Mon, 03 Jun 2019 15:44:37: 48000000 INFO @ Mon, 03 Jun 2019 15:44:41: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX3393668/SRX3393668.05_peaks.xls INFO @ Mon, 03 Jun 2019 15:44:41: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX3393668/SRX3393668.05_peaks.narrowPeak INFO @ Mon, 03 Jun 2019 15:44:41: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX3393668/SRX3393668.05_summits.bed INFO @ Mon, 03 Jun 2019 15:44:41: Done! pass1 - making usageList (15 chroms): 6 millis pass2 - checking and writing primary data (10119 records, 4 fields): 17 millis CompletedMACS2peakCalling INFO @ Mon, 03 Jun 2019 15:44:45: 49000000 INFO @ Mon, 03 Jun 2019 15:44:53: 50000000 INFO @ Mon, 03 Jun 2019 15:45:00: #1 tag size is determined as 42 bps INFO @ Mon, 03 Jun 2019 15:45:00: #1 tag size = 42 INFO @ Mon, 03 Jun 2019 15:45:00: #1 total tags in treatment: 23953314 INFO @ Mon, 03 Jun 2019 15:45:00: #1 user defined the maximum tags... INFO @ Mon, 03 Jun 2019 15:45:00: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Mon, 03 Jun 2019 15:45:00: #1 tags after filtering in treatment: 13683021 INFO @ Mon, 03 Jun 2019 15:45:00: #1 Redundant rate of treatment: 0.43 INFO @ Mon, 03 Jun 2019 15:45:00: #1 finished! INFO @ Mon, 03 Jun 2019 15:45:00: #2 Build Peak Model... INFO @ Mon, 03 Jun 2019 15:45:00: #2 looking for paired plus/minus strand peaks... INFO @ Mon, 03 Jun 2019 15:45:03: #2 number of paired peaks: 8022 INFO @ Mon, 03 Jun 2019 15:45:03: start model_add_line... INFO @ Mon, 03 Jun 2019 15:45:03: start X-correlation... INFO @ Mon, 03 Jun 2019 15:45:03: end of X-cor INFO @ Mon, 03 Jun 2019 15:45:03: #2 finished! INFO @ Mon, 03 Jun 2019 15:45:03: #2 predicted fragment length is 218 bps INFO @ Mon, 03 Jun 2019 15:45:03: #2 alternative fragment length(s) may be 218 bps INFO @ Mon, 03 Jun 2019 15:45:03: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX3393668/SRX3393668.20_model.r INFO @ Mon, 03 Jun 2019 15:45:03: #3 Call peaks... INFO @ Mon, 03 Jun 2019 15:45:03: #3 Pre-compute pvalue-qvalue table... INFO @ Mon, 03 Jun 2019 15:45:22: #3 Call peaks for each chromosome... INFO @ Mon, 03 Jun 2019 15:45:43: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX3393668/SRX3393668.10_peaks.xls INFO @ Mon, 03 Jun 2019 15:45:43: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX3393668/SRX3393668.10_peaks.narrowPeak INFO @ Mon, 03 Jun 2019 15:45:43: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX3393668/SRX3393668.10_summits.bed INFO @ Mon, 03 Jun 2019 15:45:43: Done! pass1 - making usageList (15 chroms): 4 millis pass2 - checking and writing primary data (8995 records, 4 fields): 16 millis CompletedMACS2peakCalling INFO @ Mon, 03 Jun 2019 15:45:59: #3 Call peaks for each chromosome... BedGraph に変換しました。 BigWig に変換中... INFO @ Mon, 03 Jun 2019 15:46:19: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX3393668/SRX3393668.20_peaks.xls INFO @ Mon, 03 Jun 2019 15:46:20: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX3393668/SRX3393668.20_peaks.narrowPeak INFO @ Mon, 03 Jun 2019 15:46:20: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX3393668/SRX3393668.20_summits.bed INFO @ Mon, 03 Jun 2019 15:46:20: Done! pass1 - making usageList (15 chroms): 3 millis pass2 - checking and writing primary data (7602 records, 4 fields): 12 millis CompletedMACS2peakCalling BigWig に変換しました。