Job ID = 1295417 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... spots read : 43,742,313 reads read : 87,484,626 reads written : 87,484,626 rm: cannot remove ‘[DSE]RR*’: No such file or directory rm: cannot remove ‘fastqDump_tmp*’: No such file or directory fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:07:34 43742313 reads; of these: 43742313 (100.00%) were paired; of these: 7211055 (16.49%) aligned concordantly 0 times 28500016 (65.15%) aligned concordantly exactly 1 time 8031242 (18.36%) aligned concordantly >1 times ---- 7211055 pairs aligned concordantly 0 times; of these: 77033 (1.07%) aligned discordantly 1 time ---- 7134022 pairs aligned 0 times concordantly or discordantly; of these: 14268044 mates make up the pairs; of these: 12807501 (89.76%) aligned 0 times 879877 (6.17%) aligned exactly 1 time 580666 (4.07%) aligned >1 times 85.36% overall alignment rate Time searching: 01:07:34 Overall time: 01:07:34 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 28 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 1147168 / 36563650 = 0.0314 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Mon, 03 Jun 2019 15:36:53: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX3393636/SRX3393636.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX3393636/SRX3393636.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX3393636/SRX3393636.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX3393636/SRX3393636.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Mon, 03 Jun 2019 15:36:53: #1 read tag files... INFO @ Mon, 03 Jun 2019 15:36:53: #1 read treatment tags... INFO @ Mon, 03 Jun 2019 15:36:53: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX3393636/SRX3393636.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX3393636/SRX3393636.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX3393636/SRX3393636.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX3393636/SRX3393636.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Mon, 03 Jun 2019 15:36:53: #1 read tag files... INFO @ Mon, 03 Jun 2019 15:36:53: #1 read treatment tags... INFO @ Mon, 03 Jun 2019 15:36:53: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX3393636/SRX3393636.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX3393636/SRX3393636.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX3393636/SRX3393636.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX3393636/SRX3393636.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Mon, 03 Jun 2019 15:36:53: #1 read tag files... INFO @ Mon, 03 Jun 2019 15:36:53: #1 read treatment tags... INFO @ Mon, 03 Jun 2019 15:37:01: 1000000 INFO @ Mon, 03 Jun 2019 15:37:03: 1000000 INFO @ Mon, 03 Jun 2019 15:37:03: 1000000 INFO @ Mon, 03 Jun 2019 15:37:09: 2000000 INFO @ Mon, 03 Jun 2019 15:37:12: 2000000 INFO @ Mon, 03 Jun 2019 15:37:13: 2000000 INFO @ Mon, 03 Jun 2019 15:37:17: 3000000 INFO @ Mon, 03 Jun 2019 15:37:21: 3000000 INFO @ Mon, 03 Jun 2019 15:37:23: 3000000 INFO @ Mon, 03 Jun 2019 15:37:25: 4000000 INFO @ Mon, 03 Jun 2019 15:37:30: 4000000 INFO @ Mon, 03 Jun 2019 15:37:33: 4000000 INFO @ Mon, 03 Jun 2019 15:37:33: 5000000 INFO @ Mon, 03 Jun 2019 15:37:39: 5000000 INFO @ Mon, 03 Jun 2019 15:37:41: 6000000 INFO @ Mon, 03 Jun 2019 15:37:43: 5000000 INFO @ Mon, 03 Jun 2019 15:37:48: 6000000 INFO @ Mon, 03 Jun 2019 15:37:49: 7000000 INFO @ Mon, 03 Jun 2019 15:37:53: 6000000 INFO @ Mon, 03 Jun 2019 15:37:57: 8000000 INFO @ Mon, 03 Jun 2019 15:37:58: 7000000 INFO @ Mon, 03 Jun 2019 15:38:02: 7000000 INFO @ Mon, 03 Jun 2019 15:38:06: 9000000 INFO @ Mon, 03 Jun 2019 15:38:07: 8000000 INFO @ Mon, 03 Jun 2019 15:38:12: 8000000 INFO @ Mon, 03 Jun 2019 15:38:14: 10000000 INFO @ Mon, 03 Jun 2019 15:38:16: 9000000 INFO @ Mon, 03 Jun 2019 15:38:22: 9000000 INFO @ Mon, 03 Jun 2019 15:38:23: 11000000 INFO @ Mon, 03 Jun 2019 15:38:24: 10000000 INFO @ Mon, 03 Jun 2019 15:38:31: 12000000 INFO @ Mon, 03 Jun 2019 15:38:32: 10000000 INFO @ Mon, 03 Jun 2019 15:38:34: 11000000 INFO @ Mon, 03 Jun 2019 15:38:40: 13000000 INFO @ Mon, 03 Jun 2019 15:38:41: 11000000 INFO @ Mon, 03 Jun 2019 15:38:43: 12000000 INFO @ Mon, 03 Jun 2019 15:38:48: 14000000 INFO @ Mon, 03 Jun 2019 15:38:51: 12000000 INFO @ Mon, 03 Jun 2019 15:38:52: 13000000 INFO @ Mon, 03 Jun 2019 15:38:57: 15000000 INFO @ Mon, 03 Jun 2019 15:39:00: 14000000 INFO @ Mon, 03 Jun 2019 15:39:01: 13000000 INFO @ Mon, 03 Jun 2019 15:39:05: 16000000 INFO @ Mon, 03 Jun 2019 15:39:09: 15000000 INFO @ Mon, 03 Jun 2019 15:39:11: 14000000 INFO @ Mon, 03 Jun 2019 15:39:13: 17000000 INFO @ Mon, 03 Jun 2019 15:39:18: 16000000 INFO @ Mon, 03 Jun 2019 15:39:20: 15000000 INFO @ Mon, 03 Jun 2019 15:39:21: 18000000 INFO @ Mon, 03 Jun 2019 15:39:27: 17000000 INFO @ Mon, 03 Jun 2019 15:39:29: 19000000 INFO @ Mon, 03 Jun 2019 15:39:30: 16000000 INFO @ Mon, 03 Jun 2019 15:39:36: 18000000 INFO @ Mon, 03 Jun 2019 15:39:37: 20000000 INFO @ Mon, 03 Jun 2019 15:39:40: 17000000 INFO @ Mon, 03 Jun 2019 15:39:45: 21000000 INFO @ Mon, 03 Jun 2019 15:39:45: 19000000 INFO @ Mon, 03 Jun 2019 15:39:49: 18000000 INFO @ Mon, 03 Jun 2019 15:39:52: 22000000 INFO @ Mon, 03 Jun 2019 15:39:54: 20000000 INFO @ Mon, 03 Jun 2019 15:39:59: 19000000 INFO @ Mon, 03 Jun 2019 15:40:00: 23000000 INFO @ Mon, 03 Jun 2019 15:40:03: 21000000 INFO @ Mon, 03 Jun 2019 15:40:08: 24000000 INFO @ Mon, 03 Jun 2019 15:40:08: 20000000 INFO @ Mon, 03 Jun 2019 15:40:12: 22000000 INFO @ Mon, 03 Jun 2019 15:40:16: 25000000 INFO @ Mon, 03 Jun 2019 15:40:18: 21000000 INFO @ Mon, 03 Jun 2019 15:40:21: 23000000 INFO @ Mon, 03 Jun 2019 15:40:24: 26000000 INFO @ Mon, 03 Jun 2019 15:40:28: 22000000 INFO @ Mon, 03 Jun 2019 15:40:30: 24000000 INFO @ Mon, 03 Jun 2019 15:40:31: 27000000 INFO @ Mon, 03 Jun 2019 15:40:38: 23000000 INFO @ Mon, 03 Jun 2019 15:40:39: 25000000 INFO @ Mon, 03 Jun 2019 15:40:40: 28000000 INFO @ Mon, 03 Jun 2019 15:40:48: 24000000 INFO @ Mon, 03 Jun 2019 15:40:48: 26000000 INFO @ Mon, 03 Jun 2019 15:40:48: 29000000 INFO @ Mon, 03 Jun 2019 15:40:57: 30000000 INFO @ Mon, 03 Jun 2019 15:40:57: 27000000 INFO @ Mon, 03 Jun 2019 15:40:57: 25000000 INFO @ Mon, 03 Jun 2019 15:41:05: 31000000 INFO @ Mon, 03 Jun 2019 15:41:06: 28000000 INFO @ Mon, 03 Jun 2019 15:41:07: 26000000 INFO @ Mon, 03 Jun 2019 15:41:14: 32000000 INFO @ Mon, 03 Jun 2019 15:41:15: 29000000 INFO @ Mon, 03 Jun 2019 15:41:16: 27000000 INFO @ Mon, 03 Jun 2019 15:41:22: 33000000 INFO @ Mon, 03 Jun 2019 15:41:24: 30000000 INFO @ Mon, 03 Jun 2019 15:41:26: 28000000 INFO @ Mon, 03 Jun 2019 15:41:31: 34000000 INFO @ Mon, 03 Jun 2019 15:41:33: 31000000 INFO @ Mon, 03 Jun 2019 15:41:35: 29000000 INFO @ Mon, 03 Jun 2019 15:41:39: 35000000 INFO @ Mon, 03 Jun 2019 15:41:41: 32000000 INFO @ Mon, 03 Jun 2019 15:41:45: 30000000 INFO @ Mon, 03 Jun 2019 15:41:48: 36000000 INFO @ Mon, 03 Jun 2019 15:41:50: 33000000 INFO @ Mon, 03 Jun 2019 15:41:54: 31000000 INFO @ Mon, 03 Jun 2019 15:41:56: 37000000 INFO @ Mon, 03 Jun 2019 15:41:59: 34000000 INFO @ Mon, 03 Jun 2019 15:42:04: 32000000 INFO @ Mon, 03 Jun 2019 15:42:05: 38000000 INFO @ Mon, 03 Jun 2019 15:42:08: 35000000 INFO @ Mon, 03 Jun 2019 15:42:13: 33000000 INFO @ Mon, 03 Jun 2019 15:42:13: 39000000 INFO @ Mon, 03 Jun 2019 15:42:17: 36000000 INFO @ Mon, 03 Jun 2019 15:42:22: 40000000 INFO @ Mon, 03 Jun 2019 15:42:23: 34000000 INFO @ Mon, 03 Jun 2019 15:42:26: 37000000 INFO @ Mon, 03 Jun 2019 15:42:31: 41000000 INFO @ Mon, 03 Jun 2019 15:42:34: 35000000 INFO @ Mon, 03 Jun 2019 15:42:35: 38000000 INFO @ Mon, 03 Jun 2019 15:42:39: 42000000 INFO @ Mon, 03 Jun 2019 15:42:43: 36000000 INFO @ Mon, 03 Jun 2019 15:42:44: 39000000 INFO @ Mon, 03 Jun 2019 15:42:48: 43000000 INFO @ Mon, 03 Jun 2019 15:42:53: 37000000 INFO @ Mon, 03 Jun 2019 15:42:54: 40000000 INFO @ Mon, 03 Jun 2019 15:42:56: 44000000 INFO @ Mon, 03 Jun 2019 15:43:02: 38000000 INFO @ Mon, 03 Jun 2019 15:43:03: 41000000 INFO @ Mon, 03 Jun 2019 15:43:05: 45000000 INFO @ Mon, 03 Jun 2019 15:43:12: 42000000 INFO @ Mon, 03 Jun 2019 15:43:13: 39000000 INFO @ Mon, 03 Jun 2019 15:43:13: 46000000 INFO @ Mon, 03 Jun 2019 15:43:21: 43000000 INFO @ Mon, 03 Jun 2019 15:43:22: 47000000 INFO @ Mon, 03 Jun 2019 15:43:22: 40000000 INFO @ Mon, 03 Jun 2019 15:43:30: 44000000 INFO @ Mon, 03 Jun 2019 15:43:31: 48000000 INFO @ Mon, 03 Jun 2019 15:43:32: 41000000 INFO @ Mon, 03 Jun 2019 15:43:39: 45000000 INFO @ Mon, 03 Jun 2019 15:43:39: 49000000 INFO @ Mon, 03 Jun 2019 15:43:41: 42000000 INFO @ Mon, 03 Jun 2019 15:43:48: 50000000 INFO @ Mon, 03 Jun 2019 15:43:48: 46000000 INFO @ Mon, 03 Jun 2019 15:43:51: 43000000 INFO @ Mon, 03 Jun 2019 15:43:56: 51000000 INFO @ Mon, 03 Jun 2019 15:43:57: 47000000 INFO @ Mon, 03 Jun 2019 15:44:01: 44000000 INFO @ Mon, 03 Jun 2019 15:44:04: 52000000 INFO @ Mon, 03 Jun 2019 15:44:06: 48000000 INFO @ Mon, 03 Jun 2019 15:44:11: 45000000 INFO @ Mon, 03 Jun 2019 15:44:12: 53000000 INFO @ Mon, 03 Jun 2019 15:44:15: 49000000 INFO @ Mon, 03 Jun 2019 15:44:20: 54000000 INFO @ Mon, 03 Jun 2019 15:44:20: 46000000 INFO @ Mon, 03 Jun 2019 15:44:24: 50000000 INFO @ Mon, 03 Jun 2019 15:44:27: 55000000 INFO @ Mon, 03 Jun 2019 15:44:30: 47000000 INFO @ Mon, 03 Jun 2019 15:44:33: 51000000 INFO @ Mon, 03 Jun 2019 15:44:35: 56000000 INFO @ Mon, 03 Jun 2019 15:44:40: 48000000 INFO @ Mon, 03 Jun 2019 15:44:42: 52000000 INFO @ Mon, 03 Jun 2019 15:44:43: 57000000 INFO @ Mon, 03 Jun 2019 15:44:50: 49000000 INFO @ Mon, 03 Jun 2019 15:44:51: 53000000 INFO @ Mon, 03 Jun 2019 15:44:51: 58000000 INFO @ Mon, 03 Jun 2019 15:44:59: 59000000 INFO @ Mon, 03 Jun 2019 15:44:59: 50000000 INFO @ Mon, 03 Jun 2019 15:45:00: 54000000 INFO @ Mon, 03 Jun 2019 15:45:07: 60000000 INFO @ Mon, 03 Jun 2019 15:45:09: 51000000 INFO @ Mon, 03 Jun 2019 15:45:10: 55000000 INFO @ Mon, 03 Jun 2019 15:45:15: 61000000 INFO @ Mon, 03 Jun 2019 15:45:19: 52000000 INFO @ Mon, 03 Jun 2019 15:45:19: 56000000 INFO @ Mon, 03 Jun 2019 15:45:23: 62000000 INFO @ Mon, 03 Jun 2019 15:45:28: 57000000 INFO @ Mon, 03 Jun 2019 15:45:29: 53000000 INFO @ Mon, 03 Jun 2019 15:45:31: 63000000 INFO @ Mon, 03 Jun 2019 15:45:37: 58000000 INFO @ Mon, 03 Jun 2019 15:45:38: 54000000 INFO @ Mon, 03 Jun 2019 15:45:39: 64000000 INFO @ Mon, 03 Jun 2019 15:45:47: 59000000 INFO @ Mon, 03 Jun 2019 15:45:47: 65000000 INFO @ Mon, 03 Jun 2019 15:45:48: 55000000 INFO @ Mon, 03 Jun 2019 15:45:55: 66000000 INFO @ Mon, 03 Jun 2019 15:45:56: 60000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Mon, 03 Jun 2019 15:45:58: 56000000 INFO @ Mon, 03 Jun 2019 15:46:02: 67000000 INFO @ Mon, 03 Jun 2019 15:46:05: 61000000 INFO @ Mon, 03 Jun 2019 15:46:08: 57000000 INFO @ Mon, 03 Jun 2019 15:46:10: 68000000 INFO @ Mon, 03 Jun 2019 15:46:14: 62000000 INFO @ Mon, 03 Jun 2019 15:46:18: 58000000 INFO @ Mon, 03 Jun 2019 15:46:18: 69000000 INFO @ Mon, 03 Jun 2019 15:46:23: 63000000 INFO @ Mon, 03 Jun 2019 15:46:26: 70000000 INFO @ Mon, 03 Jun 2019 15:46:28: 59000000 INFO @ Mon, 03 Jun 2019 15:46:32: 64000000 INFO @ Mon, 03 Jun 2019 15:46:34: 71000000 INFO @ Mon, 03 Jun 2019 15:46:37: 60000000 INFO @ Mon, 03 Jun 2019 15:46:41: 65000000 INFO @ Mon, 03 Jun 2019 15:46:42: 72000000 INFO @ Mon, 03 Jun 2019 15:46:45: #1 tag size is determined as 42 bps INFO @ Mon, 03 Jun 2019 15:46:45: #1 tag size = 42 INFO @ Mon, 03 Jun 2019 15:46:45: #1 total tags in treatment: 35384599 INFO @ Mon, 03 Jun 2019 15:46:45: #1 user defined the maximum tags... INFO @ Mon, 03 Jun 2019 15:46:45: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Mon, 03 Jun 2019 15:46:46: #1 tags after filtering in treatment: 19524833 INFO @ Mon, 03 Jun 2019 15:46:46: #1 Redundant rate of treatment: 0.45 INFO @ Mon, 03 Jun 2019 15:46:46: #1 finished! INFO @ Mon, 03 Jun 2019 15:46:46: #2 Build Peak Model... INFO @ Mon, 03 Jun 2019 15:46:46: #2 looking for paired plus/minus strand peaks... INFO @ Mon, 03 Jun 2019 15:46:47: 61000000 INFO @ Mon, 03 Jun 2019 15:46:49: #2 number of paired peaks: 11590 INFO @ Mon, 03 Jun 2019 15:46:49: start model_add_line... INFO @ Mon, 03 Jun 2019 15:46:50: 66000000 INFO @ Mon, 03 Jun 2019 15:46:50: start X-correlation... INFO @ Mon, 03 Jun 2019 15:46:50: end of X-cor INFO @ Mon, 03 Jun 2019 15:46:50: #2 finished! INFO @ Mon, 03 Jun 2019 15:46:50: #2 predicted fragment length is 106 bps INFO @ Mon, 03 Jun 2019 15:46:50: #2 alternative fragment length(s) may be 106 bps INFO @ Mon, 03 Jun 2019 15:46:50: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX3393636/SRX3393636.10_model.r INFO @ Mon, 03 Jun 2019 15:46:50: #3 Call peaks... INFO @ Mon, 03 Jun 2019 15:46:50: #3 Pre-compute pvalue-qvalue table... INFO @ Mon, 03 Jun 2019 15:46:57: 62000000 INFO @ Mon, 03 Jun 2019 15:46:59: 67000000 INFO @ Mon, 03 Jun 2019 15:47:07: 63000000 INFO @ Mon, 03 Jun 2019 15:47:08: 68000000 BigWig に変換しました。 INFO @ Mon, 03 Jun 2019 15:47:16: 69000000 INFO @ Mon, 03 Jun 2019 15:47:17: 64000000 INFO @ Mon, 03 Jun 2019 15:47:25: 70000000 INFO @ Mon, 03 Jun 2019 15:47:26: 65000000 INFO @ Mon, 03 Jun 2019 15:47:34: 71000000 INFO @ Mon, 03 Jun 2019 15:47:36: 66000000 INFO @ Mon, 03 Jun 2019 15:47:43: 72000000 INFO @ Mon, 03 Jun 2019 15:47:44: #3 Call peaks for each chromosome... INFO @ Mon, 03 Jun 2019 15:47:45: 67000000 INFO @ Mon, 03 Jun 2019 15:47:47: #1 tag size is determined as 42 bps INFO @ Mon, 03 Jun 2019 15:47:47: #1 tag size = 42 INFO @ Mon, 03 Jun 2019 15:47:47: #1 total tags in treatment: 35384599 INFO @ Mon, 03 Jun 2019 15:47:47: #1 user defined the maximum tags... INFO @ Mon, 03 Jun 2019 15:47:47: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Mon, 03 Jun 2019 15:47:47: #1 tags after filtering in treatment: 19524833 INFO @ Mon, 03 Jun 2019 15:47:47: #1 Redundant rate of treatment: 0.45 INFO @ Mon, 03 Jun 2019 15:47:47: #1 finished! INFO @ Mon, 03 Jun 2019 15:47:47: #2 Build Peak Model... INFO @ Mon, 03 Jun 2019 15:47:47: #2 looking for paired plus/minus strand peaks... INFO @ Mon, 03 Jun 2019 15:47:51: #2 number of paired peaks: 11590 INFO @ Mon, 03 Jun 2019 15:47:51: start model_add_line... INFO @ Mon, 03 Jun 2019 15:47:51: start X-correlation... INFO @ Mon, 03 Jun 2019 15:47:51: end of X-cor INFO @ Mon, 03 Jun 2019 15:47:51: #2 finished! INFO @ Mon, 03 Jun 2019 15:47:51: #2 predicted fragment length is 106 bps INFO @ Mon, 03 Jun 2019 15:47:51: #2 alternative fragment length(s) may be 106 bps INFO @ Mon, 03 Jun 2019 15:47:51: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX3393636/SRX3393636.05_model.r INFO @ Mon, 03 Jun 2019 15:47:51: #3 Call peaks... INFO @ Mon, 03 Jun 2019 15:47:51: #3 Pre-compute pvalue-qvalue table... INFO @ Mon, 03 Jun 2019 15:47:55: 68000000 INFO @ Mon, 03 Jun 2019 15:48:04: 69000000 INFO @ Mon, 03 Jun 2019 15:48:06: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX3393636/SRX3393636.10_peaks.xls INFO @ Mon, 03 Jun 2019 15:48:06: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX3393636/SRX3393636.10_peaks.narrowPeak INFO @ Mon, 03 Jun 2019 15:48:06: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX3393636/SRX3393636.10_summits.bed INFO @ Mon, 03 Jun 2019 15:48:06: Done! pass1 - making usageList (14 chroms): 5 millis pass2 - checking and writing primary data (12082 records, 4 fields): 22 millis CompletedMACS2peakCalling INFO @ Mon, 03 Jun 2019 15:48:13: 70000000 INFO @ Mon, 03 Jun 2019 15:48:22: 71000000 INFO @ Mon, 03 Jun 2019 15:48:32: 72000000 INFO @ Mon, 03 Jun 2019 15:48:36: #1 tag size is determined as 42 bps INFO @ Mon, 03 Jun 2019 15:48:36: #1 tag size = 42 INFO @ Mon, 03 Jun 2019 15:48:36: #1 total tags in treatment: 35384599 INFO @ Mon, 03 Jun 2019 15:48:36: #1 user defined the maximum tags... INFO @ Mon, 03 Jun 2019 15:48:36: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Mon, 03 Jun 2019 15:48:37: #1 tags after filtering in treatment: 19524833 INFO @ Mon, 03 Jun 2019 15:48:37: #1 Redundant rate of treatment: 0.45 INFO @ Mon, 03 Jun 2019 15:48:37: #1 finished! INFO @ Mon, 03 Jun 2019 15:48:37: #2 Build Peak Model... INFO @ Mon, 03 Jun 2019 15:48:37: #2 looking for paired plus/minus strand peaks... INFO @ Mon, 03 Jun 2019 15:48:40: #2 number of paired peaks: 11590 INFO @ Mon, 03 Jun 2019 15:48:40: start model_add_line... INFO @ Mon, 03 Jun 2019 15:48:40: start X-correlation... INFO @ Mon, 03 Jun 2019 15:48:40: end of X-cor INFO @ Mon, 03 Jun 2019 15:48:40: #2 finished! INFO @ Mon, 03 Jun 2019 15:48:40: #2 predicted fragment length is 106 bps INFO @ Mon, 03 Jun 2019 15:48:40: #2 alternative fragment length(s) may be 106 bps INFO @ Mon, 03 Jun 2019 15:48:40: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX3393636/SRX3393636.20_model.r INFO @ Mon, 03 Jun 2019 15:48:40: #3 Call peaks... INFO @ Mon, 03 Jun 2019 15:48:40: #3 Pre-compute pvalue-qvalue table... INFO @ Mon, 03 Jun 2019 15:48:45: #3 Call peaks for each chromosome... INFO @ Mon, 03 Jun 2019 15:49:08: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX3393636/SRX3393636.05_peaks.xls INFO @ Mon, 03 Jun 2019 15:49:08: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX3393636/SRX3393636.05_peaks.narrowPeak INFO @ Mon, 03 Jun 2019 15:49:08: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX3393636/SRX3393636.05_summits.bed INFO @ Mon, 03 Jun 2019 15:49:08: Done! pass1 - making usageList (14 chroms): 3 millis pass2 - checking and writing primary data (13903 records, 4 fields): 19 millis CompletedMACS2peakCalling INFO @ Mon, 03 Jun 2019 15:49:34: #3 Call peaks for each chromosome... INFO @ Mon, 03 Jun 2019 15:49:57: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX3393636/SRX3393636.20_peaks.xls INFO @ Mon, 03 Jun 2019 15:49:57: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX3393636/SRX3393636.20_peaks.narrowPeak INFO @ Mon, 03 Jun 2019 15:49:57: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX3393636/SRX3393636.20_summits.bed INFO @ Mon, 03 Jun 2019 15:49:57: Done! pass1 - making usageList (14 chroms): 2 millis pass2 - checking and writing primary data (9740 records, 4 fields): 21 millis CompletedMACS2peakCalling