Job ID = 1295414 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... spots read : 40,071,216 reads read : 80,142,432 reads written : 80,142,432 rm: cannot remove ‘[DSE]RR*’: No such file or directory rm: cannot remove ‘fastqDump_tmp*’: No such file or directory fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:59:42 40071216 reads; of these: 40071216 (100.00%) were paired; of these: 7832178 (19.55%) aligned concordantly 0 times 25358726 (63.28%) aligned concordantly exactly 1 time 6880312 (17.17%) aligned concordantly >1 times ---- 7832178 pairs aligned concordantly 0 times; of these: 55864 (0.71%) aligned discordantly 1 time ---- 7776314 pairs aligned 0 times concordantly or discordantly; of these: 15552628 mates make up the pairs; of these: 14219858 (91.43%) aligned 0 times 796847 (5.12%) aligned exactly 1 time 535923 (3.45%) aligned >1 times 82.26% overall alignment rate Time searching: 00:59:42 Overall time: 00:59:42 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 28 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 844807 / 32261078 = 0.0262 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Mon, 03 Jun 2019 15:22:06: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX3393634/SRX3393634.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX3393634/SRX3393634.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX3393634/SRX3393634.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX3393634/SRX3393634.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Mon, 03 Jun 2019 15:22:06: #1 read tag files... INFO @ Mon, 03 Jun 2019 15:22:06: #1 read treatment tags... INFO @ Mon, 03 Jun 2019 15:22:06: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX3393634/SRX3393634.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX3393634/SRX3393634.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX3393634/SRX3393634.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX3393634/SRX3393634.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Mon, 03 Jun 2019 15:22:06: #1 read tag files... INFO @ Mon, 03 Jun 2019 15:22:06: #1 read treatment tags... INFO @ Mon, 03 Jun 2019 15:22:06: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX3393634/SRX3393634.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX3393634/SRX3393634.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX3393634/SRX3393634.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX3393634/SRX3393634.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Mon, 03 Jun 2019 15:22:06: #1 read tag files... INFO @ Mon, 03 Jun 2019 15:22:06: #1 read treatment tags... INFO @ Mon, 03 Jun 2019 15:22:13: 1000000 INFO @ Mon, 03 Jun 2019 15:22:15: 1000000 INFO @ Mon, 03 Jun 2019 15:22:15: 1000000 INFO @ Mon, 03 Jun 2019 15:22:21: 2000000 INFO @ Mon, 03 Jun 2019 15:22:23: 2000000 INFO @ Mon, 03 Jun 2019 15:22:24: 2000000 INFO @ Mon, 03 Jun 2019 15:22:28: 3000000 INFO @ Mon, 03 Jun 2019 15:22:31: 3000000 INFO @ Mon, 03 Jun 2019 15:22:32: 3000000 INFO @ Mon, 03 Jun 2019 15:22:35: 4000000 INFO @ Mon, 03 Jun 2019 15:22:39: 4000000 INFO @ Mon, 03 Jun 2019 15:22:40: 4000000 INFO @ Mon, 03 Jun 2019 15:22:42: 5000000 INFO @ Mon, 03 Jun 2019 15:22:47: 5000000 INFO @ Mon, 03 Jun 2019 15:22:48: 5000000 INFO @ Mon, 03 Jun 2019 15:22:49: 6000000 INFO @ Mon, 03 Jun 2019 15:22:55: 6000000 INFO @ Mon, 03 Jun 2019 15:22:56: 7000000 INFO @ Mon, 03 Jun 2019 15:22:57: 6000000 INFO @ Mon, 03 Jun 2019 15:23:03: 7000000 INFO @ Mon, 03 Jun 2019 15:23:03: 8000000 INFO @ Mon, 03 Jun 2019 15:23:05: 7000000 INFO @ Mon, 03 Jun 2019 15:23:11: 9000000 INFO @ Mon, 03 Jun 2019 15:23:11: 8000000 INFO @ Mon, 03 Jun 2019 15:23:14: 8000000 INFO @ Mon, 03 Jun 2019 15:23:18: 10000000 INFO @ Mon, 03 Jun 2019 15:23:19: 9000000 INFO @ Mon, 03 Jun 2019 15:23:22: 9000000 INFO @ Mon, 03 Jun 2019 15:23:25: 11000000 INFO @ Mon, 03 Jun 2019 15:23:28: 10000000 INFO @ Mon, 03 Jun 2019 15:23:30: 10000000 INFO @ Mon, 03 Jun 2019 15:23:33: 12000000 INFO @ Mon, 03 Jun 2019 15:23:36: 11000000 INFO @ Mon, 03 Jun 2019 15:23:39: 11000000 INFO @ Mon, 03 Jun 2019 15:23:41: 13000000 INFO @ Mon, 03 Jun 2019 15:23:44: 12000000 INFO @ Mon, 03 Jun 2019 15:23:47: 12000000 INFO @ Mon, 03 Jun 2019 15:23:49: 14000000 INFO @ Mon, 03 Jun 2019 15:23:52: 13000000 INFO @ Mon, 03 Jun 2019 15:23:56: 13000000 INFO @ Mon, 03 Jun 2019 15:23:57: 15000000 INFO @ Mon, 03 Jun 2019 15:24:00: 14000000 INFO @ Mon, 03 Jun 2019 15:24:04: 14000000 INFO @ Mon, 03 Jun 2019 15:24:05: 16000000 INFO @ Mon, 03 Jun 2019 15:24:08: 15000000 INFO @ Mon, 03 Jun 2019 15:24:13: 17000000 INFO @ Mon, 03 Jun 2019 15:24:13: 15000000 INFO @ Mon, 03 Jun 2019 15:24:17: 16000000 INFO @ Mon, 03 Jun 2019 15:24:21: 18000000 INFO @ Mon, 03 Jun 2019 15:24:22: 16000000 INFO @ Mon, 03 Jun 2019 15:24:25: 17000000 INFO @ Mon, 03 Jun 2019 15:24:29: 19000000 INFO @ Mon, 03 Jun 2019 15:24:30: 17000000 INFO @ Mon, 03 Jun 2019 15:24:33: 18000000 INFO @ Mon, 03 Jun 2019 15:24:37: 20000000 INFO @ Mon, 03 Jun 2019 15:24:39: 18000000 INFO @ Mon, 03 Jun 2019 15:24:41: 19000000 INFO @ Mon, 03 Jun 2019 15:24:45: 21000000 INFO @ Mon, 03 Jun 2019 15:24:50: 20000000 INFO @ Mon, 03 Jun 2019 15:24:50: 19000000 INFO @ Mon, 03 Jun 2019 15:24:53: 22000000 INFO @ Mon, 03 Jun 2019 15:24:58: 21000000 INFO @ Mon, 03 Jun 2019 15:24:58: 20000000 INFO @ Mon, 03 Jun 2019 15:25:01: 23000000 INFO @ Mon, 03 Jun 2019 15:25:06: 22000000 INFO @ Mon, 03 Jun 2019 15:25:07: 21000000 INFO @ Mon, 03 Jun 2019 15:25:10: 24000000 INFO @ Mon, 03 Jun 2019 15:25:14: 23000000 INFO @ Mon, 03 Jun 2019 15:25:16: 22000000 INFO @ Mon, 03 Jun 2019 15:25:18: 25000000 INFO @ Mon, 03 Jun 2019 15:25:23: 24000000 INFO @ Mon, 03 Jun 2019 15:25:25: 23000000 INFO @ Mon, 03 Jun 2019 15:25:26: 26000000 INFO @ Mon, 03 Jun 2019 15:25:31: 25000000 INFO @ Mon, 03 Jun 2019 15:25:34: 24000000 INFO @ Mon, 03 Jun 2019 15:25:34: 27000000 INFO @ Mon, 03 Jun 2019 15:25:39: 26000000 INFO @ Mon, 03 Jun 2019 15:25:42: 28000000 INFO @ Mon, 03 Jun 2019 15:25:42: 25000000 INFO @ Mon, 03 Jun 2019 15:25:47: 27000000 INFO @ Mon, 03 Jun 2019 15:25:50: 29000000 INFO @ Mon, 03 Jun 2019 15:25:51: 26000000 INFO @ Mon, 03 Jun 2019 15:25:56: 28000000 INFO @ Mon, 03 Jun 2019 15:25:58: 30000000 INFO @ Mon, 03 Jun 2019 15:26:00: 27000000 INFO @ Mon, 03 Jun 2019 15:26:04: 29000000 INFO @ Mon, 03 Jun 2019 15:26:06: 31000000 INFO @ Mon, 03 Jun 2019 15:26:09: 28000000 INFO @ Mon, 03 Jun 2019 15:26:12: 30000000 INFO @ Mon, 03 Jun 2019 15:26:14: 32000000 INFO @ Mon, 03 Jun 2019 15:26:18: 29000000 INFO @ Mon, 03 Jun 2019 15:26:20: 31000000 INFO @ Mon, 03 Jun 2019 15:26:22: 33000000 INFO @ Mon, 03 Jun 2019 15:26:27: 30000000 INFO @ Mon, 03 Jun 2019 15:26:28: 32000000 INFO @ Mon, 03 Jun 2019 15:26:30: 34000000 INFO @ Mon, 03 Jun 2019 15:26:37: 31000000 INFO @ Mon, 03 Jun 2019 15:26:37: 33000000 INFO @ Mon, 03 Jun 2019 15:26:38: 35000000 INFO @ Mon, 03 Jun 2019 15:26:45: 34000000 INFO @ Mon, 03 Jun 2019 15:26:46: 32000000 INFO @ Mon, 03 Jun 2019 15:26:47: 36000000 INFO @ Mon, 03 Jun 2019 15:26:53: 35000000 INFO @ Mon, 03 Jun 2019 15:26:54: 33000000 INFO @ Mon, 03 Jun 2019 15:26:55: 37000000 INFO @ Mon, 03 Jun 2019 15:27:01: 36000000 INFO @ Mon, 03 Jun 2019 15:27:03: 38000000 INFO @ Mon, 03 Jun 2019 15:27:03: 34000000 INFO @ Mon, 03 Jun 2019 15:27:10: 37000000 INFO @ Mon, 03 Jun 2019 15:27:11: 39000000 INFO @ Mon, 03 Jun 2019 15:27:13: 35000000 INFO @ Mon, 03 Jun 2019 15:27:18: 38000000 INFO @ Mon, 03 Jun 2019 15:27:20: 40000000 INFO @ Mon, 03 Jun 2019 15:27:21: 36000000 INFO @ Mon, 03 Jun 2019 15:27:26: 39000000 INFO @ Mon, 03 Jun 2019 15:27:28: 41000000 INFO @ Mon, 03 Jun 2019 15:27:30: 37000000 INFO @ Mon, 03 Jun 2019 15:27:34: 40000000 INFO @ Mon, 03 Jun 2019 15:27:36: 42000000 INFO @ Mon, 03 Jun 2019 15:27:39: 38000000 INFO @ Mon, 03 Jun 2019 15:27:43: 41000000 INFO @ Mon, 03 Jun 2019 15:27:44: 43000000 INFO @ Mon, 03 Jun 2019 15:27:48: 39000000 INFO @ Mon, 03 Jun 2019 15:27:51: 42000000 INFO @ Mon, 03 Jun 2019 15:27:52: 44000000 INFO @ Mon, 03 Jun 2019 15:27:57: 40000000 INFO @ Mon, 03 Jun 2019 15:27:59: 43000000 INFO @ Mon, 03 Jun 2019 15:28:00: 45000000 INFO @ Mon, 03 Jun 2019 15:28:06: 41000000 INFO @ Mon, 03 Jun 2019 15:28:07: 44000000 INFO @ Mon, 03 Jun 2019 15:28:08: 46000000 INFO @ Mon, 03 Jun 2019 15:28:15: 42000000 INFO @ Mon, 03 Jun 2019 15:28:15: 45000000 INFO @ Mon, 03 Jun 2019 15:28:17: 47000000 INFO @ Mon, 03 Jun 2019 15:28:24: 46000000 INFO @ Mon, 03 Jun 2019 15:28:24: 43000000 INFO @ Mon, 03 Jun 2019 15:28:25: 48000000 INFO @ Mon, 03 Jun 2019 15:28:32: 47000000 INFO @ Mon, 03 Jun 2019 15:28:32: 44000000 INFO @ Mon, 03 Jun 2019 15:28:33: 49000000 INFO @ Mon, 03 Jun 2019 15:28:40: 48000000 INFO @ Mon, 03 Jun 2019 15:28:41: 50000000 INFO @ Mon, 03 Jun 2019 15:28:41: 45000000 INFO @ Mon, 03 Jun 2019 15:28:48: 49000000 INFO @ Mon, 03 Jun 2019 15:28:49: 51000000 INFO @ Mon, 03 Jun 2019 15:28:50: 46000000 INFO @ Mon, 03 Jun 2019 15:28:57: 50000000 INFO @ Mon, 03 Jun 2019 15:28:57: 52000000 INFO @ Mon, 03 Jun 2019 15:28:59: 47000000 INFO @ Mon, 03 Jun 2019 15:29:05: 51000000 INFO @ Mon, 03 Jun 2019 15:29:05: 53000000 INFO @ Mon, 03 Jun 2019 15:29:08: 48000000 INFO @ Mon, 03 Jun 2019 15:29:13: 52000000 INFO @ Mon, 03 Jun 2019 15:29:13: 54000000 INFO @ Mon, 03 Jun 2019 15:29:17: 49000000 INFO @ Mon, 03 Jun 2019 15:29:21: 53000000 INFO @ Mon, 03 Jun 2019 15:29:21: 55000000 INFO @ Mon, 03 Jun 2019 15:29:26: 50000000 INFO @ Mon, 03 Jun 2019 15:29:29: 54000000 INFO @ Mon, 03 Jun 2019 15:29:30: 56000000 INFO @ Mon, 03 Jun 2019 15:29:35: 51000000 INFO @ Mon, 03 Jun 2019 15:29:38: 55000000 INFO @ Mon, 03 Jun 2019 15:29:38: 57000000 INFO @ Mon, 03 Jun 2019 15:29:43: 52000000 INFO @ Mon, 03 Jun 2019 15:29:46: 56000000 INFO @ Mon, 03 Jun 2019 15:29:46: 58000000 INFO @ Mon, 03 Jun 2019 15:29:52: 53000000 INFO @ Mon, 03 Jun 2019 15:29:54: 57000000 INFO @ Mon, 03 Jun 2019 15:29:54: 59000000 INFO @ Mon, 03 Jun 2019 15:30:01: 54000000 INFO @ Mon, 03 Jun 2019 15:30:02: 58000000 INFO @ Mon, 03 Jun 2019 15:30:02: 60000000 INFO @ Mon, 03 Jun 2019 15:30:10: 55000000 INFO @ Mon, 03 Jun 2019 15:30:11: 59000000 INFO @ Mon, 03 Jun 2019 15:30:11: 61000000 INFO @ Mon, 03 Jun 2019 15:30:18: 62000000 INFO @ Mon, 03 Jun 2019 15:30:19: 60000000 INFO @ Mon, 03 Jun 2019 15:30:19: 56000000 INFO @ Mon, 03 Jun 2019 15:30:26: 63000000 INFO @ Mon, 03 Jun 2019 15:30:27: 61000000 INFO @ Mon, 03 Jun 2019 15:30:28: 57000000 INFO @ Mon, 03 Jun 2019 15:30:33: 64000000 INFO @ Mon, 03 Jun 2019 15:30:35: 62000000 INFO @ Mon, 03 Jun 2019 15:30:36: #1 tag size is determined as 42 bps INFO @ Mon, 03 Jun 2019 15:30:36: #1 tag size = 42 INFO @ Mon, 03 Jun 2019 15:30:36: #1 total tags in treatment: 31394525 INFO @ Mon, 03 Jun 2019 15:30:36: #1 user defined the maximum tags... INFO @ Mon, 03 Jun 2019 15:30:36: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Mon, 03 Jun 2019 15:30:36: #1 tags after filtering in treatment: 18167610 INFO @ Mon, 03 Jun 2019 15:30:36: #1 Redundant rate of treatment: 0.42 INFO @ Mon, 03 Jun 2019 15:30:36: #1 finished! INFO @ Mon, 03 Jun 2019 15:30:36: #2 Build Peak Model... INFO @ Mon, 03 Jun 2019 15:30:36: #2 looking for paired plus/minus strand peaks... INFO @ Mon, 03 Jun 2019 15:30:37: 58000000 INFO @ Mon, 03 Jun 2019 15:30:39: #2 number of paired peaks: 12013 INFO @ Mon, 03 Jun 2019 15:30:39: start model_add_line... INFO @ Mon, 03 Jun 2019 15:30:40: start X-correlation... INFO @ Mon, 03 Jun 2019 15:30:40: end of X-cor INFO @ Mon, 03 Jun 2019 15:30:40: #2 finished! INFO @ Mon, 03 Jun 2019 15:30:40: #2 predicted fragment length is 111 bps INFO @ Mon, 03 Jun 2019 15:30:40: #2 alternative fragment length(s) may be 111 bps INFO @ Mon, 03 Jun 2019 15:30:40: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX3393634/SRX3393634.20_model.r INFO @ Mon, 03 Jun 2019 15:30:40: #3 Call peaks... INFO @ Mon, 03 Jun 2019 15:30:40: #3 Pre-compute pvalue-qvalue table... INFO @ Mon, 03 Jun 2019 15:30:43: 63000000 INFO @ Mon, 03 Jun 2019 15:30:46: 59000000 INFO @ Mon, 03 Jun 2019 15:30:51: 64000000 INFO @ Mon, 03 Jun 2019 15:30:53: #1 tag size is determined as 42 bps INFO @ Mon, 03 Jun 2019 15:30:53: #1 tag size = 42 INFO @ Mon, 03 Jun 2019 15:30:53: #1 total tags in treatment: 31394525 INFO @ Mon, 03 Jun 2019 15:30:53: #1 user defined the maximum tags... INFO @ Mon, 03 Jun 2019 15:30:53: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Mon, 03 Jun 2019 15:30:54: #1 tags after filtering in treatment: 18167610 INFO @ Mon, 03 Jun 2019 15:30:54: #1 Redundant rate of treatment: 0.42 INFO @ Mon, 03 Jun 2019 15:30:54: #1 finished! INFO @ Mon, 03 Jun 2019 15:30:54: #2 Build Peak Model... INFO @ Mon, 03 Jun 2019 15:30:54: #2 looking for paired plus/minus strand peaks... INFO @ Mon, 03 Jun 2019 15:30:55: 60000000 INFO @ Mon, 03 Jun 2019 15:30:57: #2 number of paired peaks: 12013 INFO @ Mon, 03 Jun 2019 15:30:57: start model_add_line... INFO @ Mon, 03 Jun 2019 15:30:57: start X-correlation... INFO @ Mon, 03 Jun 2019 15:30:58: end of X-cor INFO @ Mon, 03 Jun 2019 15:30:58: #2 finished! INFO @ Mon, 03 Jun 2019 15:30:58: #2 predicted fragment length is 111 bps INFO @ Mon, 03 Jun 2019 15:30:58: #2 alternative fragment length(s) may be 111 bps INFO @ Mon, 03 Jun 2019 15:30:58: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX3393634/SRX3393634.05_model.r INFO @ Mon, 03 Jun 2019 15:30:58: #3 Call peaks... INFO @ Mon, 03 Jun 2019 15:30:58: #3 Pre-compute pvalue-qvalue table... INFO @ Mon, 03 Jun 2019 15:31:02: 61000000 INFO @ Mon, 03 Jun 2019 15:31:11: 62000000 INFO @ Mon, 03 Jun 2019 15:31:19: 63000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Mon, 03 Jun 2019 15:31:28: 64000000 INFO @ Mon, 03 Jun 2019 15:31:30: #1 tag size is determined as 42 bps INFO @ Mon, 03 Jun 2019 15:31:30: #1 tag size = 42 INFO @ Mon, 03 Jun 2019 15:31:30: #1 total tags in treatment: 31394525 INFO @ Mon, 03 Jun 2019 15:31:30: #1 user defined the maximum tags... INFO @ Mon, 03 Jun 2019 15:31:30: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Mon, 03 Jun 2019 15:31:31: #1 tags after filtering in treatment: 18167610 INFO @ Mon, 03 Jun 2019 15:31:31: #1 Redundant rate of treatment: 0.42 INFO @ Mon, 03 Jun 2019 15:31:31: #1 finished! INFO @ Mon, 03 Jun 2019 15:31:31: #2 Build Peak Model... INFO @ Mon, 03 Jun 2019 15:31:31: #2 looking for paired plus/minus strand peaks... INFO @ Mon, 03 Jun 2019 15:31:32: #3 Call peaks for each chromosome... INFO @ Mon, 03 Jun 2019 15:31:34: #2 number of paired peaks: 12013 INFO @ Mon, 03 Jun 2019 15:31:34: start model_add_line... INFO @ Mon, 03 Jun 2019 15:31:34: start X-correlation... INFO @ Mon, 03 Jun 2019 15:31:34: end of X-cor INFO @ Mon, 03 Jun 2019 15:31:34: #2 finished! INFO @ Mon, 03 Jun 2019 15:31:34: #2 predicted fragment length is 111 bps INFO @ Mon, 03 Jun 2019 15:31:34: #2 alternative fragment length(s) may be 111 bps INFO @ Mon, 03 Jun 2019 15:31:34: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX3393634/SRX3393634.10_model.r INFO @ Mon, 03 Jun 2019 15:31:34: #3 Call peaks... INFO @ Mon, 03 Jun 2019 15:31:34: #3 Pre-compute pvalue-qvalue table... INFO @ Mon, 03 Jun 2019 15:31:53: #3 Call peaks for each chromosome... INFO @ Mon, 03 Jun 2019 15:31:53: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX3393634/SRX3393634.20_peaks.xls INFO @ Mon, 03 Jun 2019 15:31:53: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX3393634/SRX3393634.20_peaks.narrowPeak INFO @ Mon, 03 Jun 2019 15:31:53: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX3393634/SRX3393634.20_summits.bed INFO @ Mon, 03 Jun 2019 15:31:53: Done! pass1 - making usageList (14 chroms): 5 millis pass2 - checking and writing primary data (9769 records, 4 fields): 16 millis CompletedMACS2peakCalling INFO @ Mon, 03 Jun 2019 15:32:15: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX3393634/SRX3393634.05_peaks.xls INFO @ Mon, 03 Jun 2019 15:32:15: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX3393634/SRX3393634.05_peaks.narrowPeak INFO @ Mon, 03 Jun 2019 15:32:15: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX3393634/SRX3393634.05_summits.bed INFO @ Mon, 03 Jun 2019 15:32:15: Done! pass1 - making usageList (14 chroms): 3 millis pass2 - checking and writing primary data (13784 records, 4 fields): 19 millis CompletedMACS2peakCalling INFO @ Mon, 03 Jun 2019 15:32:27: #3 Call peaks for each chromosome... BigWig に変換しました。 INFO @ Mon, 03 Jun 2019 15:32:48: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX3393634/SRX3393634.10_peaks.xls INFO @ Mon, 03 Jun 2019 15:32:48: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX3393634/SRX3393634.10_peaks.narrowPeak INFO @ Mon, 03 Jun 2019 15:32:49: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX3393634/SRX3393634.10_summits.bed INFO @ Mon, 03 Jun 2019 15:32:49: Done! pass1 - making usageList (14 chroms): 6 millis pass2 - checking and writing primary data (12022 records, 4 fields): 17 millis CompletedMACS2peakCalling