Job ID = 12265182 SRX = SRX3282115 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 50087614 spots for SRR6171266/SRR6171266.sra Written 50087614 spots for SRR6171266/SRR6171266.sra fastq に変換しました。 bowtie でマッピング中... Your job 12266623 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 02:16:48 50087614 reads; of these: 50087614 (100.00%) were paired; of these: 19169658 (38.27%) aligned concordantly 0 times 16834811 (33.61%) aligned concordantly exactly 1 time 14083145 (28.12%) aligned concordantly >1 times ---- 19169658 pairs aligned concordantly 0 times; of these: 3455431 (18.03%) aligned discordantly 1 time ---- 15714227 pairs aligned 0 times concordantly or discordantly; of these: 31428454 mates make up the pairs; of these: 25874273 (82.33%) aligned 0 times 908082 (2.89%) aligned exactly 1 time 4646099 (14.78%) aligned >1 times 74.17% overall alignment rate Time searching: 02:16:48 Overall time: 02:16:48 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 32 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 11322299 / 34080263 = 0.3322 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 09:29:13: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX3282115/SRX3282115.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX3282115/SRX3282115.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX3282115/SRX3282115.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX3282115/SRX3282115.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 09:29:13: #1 read tag files... INFO @ Sat, 03 Apr 2021 09:29:13: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 09:29:24: 1000000 INFO @ Sat, 03 Apr 2021 09:29:33: 2000000 WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 09:29:43: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX3282115/SRX3282115.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX3282115/SRX3282115.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX3282115/SRX3282115.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX3282115/SRX3282115.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 09:29:43: #1 read tag files... INFO @ Sat, 03 Apr 2021 09:29:43: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 09:29:43: 3000000 INFO @ Sat, 03 Apr 2021 09:29:55: 1000000 INFO @ Sat, 03 Apr 2021 09:29:55: 4000000 INFO @ Sat, 03 Apr 2021 09:30:07: 2000000 INFO @ Sat, 03 Apr 2021 09:30:07: 5000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 09:30:13: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX3282115/SRX3282115.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX3282115/SRX3282115.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX3282115/SRX3282115.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX3282115/SRX3282115.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 09:30:13: #1 read tag files... INFO @ Sat, 03 Apr 2021 09:30:13: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 09:30:18: 6000000 INFO @ Sat, 03 Apr 2021 09:30:19: 3000000 INFO @ Sat, 03 Apr 2021 09:30:24: 1000000 INFO @ Sat, 03 Apr 2021 09:30:31: 7000000 INFO @ Sat, 03 Apr 2021 09:30:31: 4000000 INFO @ Sat, 03 Apr 2021 09:30:36: 2000000 INFO @ Sat, 03 Apr 2021 09:30:43: 5000000 INFO @ Sat, 03 Apr 2021 09:30:43: 8000000 INFO @ Sat, 03 Apr 2021 09:30:49: 3000000 INFO @ Sat, 03 Apr 2021 09:30:56: 6000000 INFO @ Sat, 03 Apr 2021 09:30:56: 9000000 INFO @ Sat, 03 Apr 2021 09:31:03: 4000000 INFO @ Sat, 03 Apr 2021 09:31:08: 10000000 INFO @ Sat, 03 Apr 2021 09:31:09: 7000000 INFO @ Sat, 03 Apr 2021 09:31:14: 5000000 INFO @ Sat, 03 Apr 2021 09:31:20: 11000000 INFO @ Sat, 03 Apr 2021 09:31:22: 8000000 INFO @ Sat, 03 Apr 2021 09:31:27: 6000000 INFO @ Sat, 03 Apr 2021 09:31:33: 12000000 INFO @ Sat, 03 Apr 2021 09:31:34: 9000000 INFO @ Sat, 03 Apr 2021 09:31:39: 7000000 INFO @ Sat, 03 Apr 2021 09:31:44: 13000000 INFO @ Sat, 03 Apr 2021 09:31:45: 10000000 INFO @ Sat, 03 Apr 2021 09:31:52: 8000000 INFO @ Sat, 03 Apr 2021 09:31:56: 14000000 INFO @ Sat, 03 Apr 2021 09:31:58: 11000000 INFO @ Sat, 03 Apr 2021 09:32:03: 9000000 INFO @ Sat, 03 Apr 2021 09:32:07: 15000000 INFO @ Sat, 03 Apr 2021 09:32:09: 12000000 INFO @ Sat, 03 Apr 2021 09:32:15: 10000000 INFO @ Sat, 03 Apr 2021 09:32:19: 16000000 INFO @ Sat, 03 Apr 2021 09:32:21: 13000000 INFO @ Sat, 03 Apr 2021 09:32:27: 11000000 INFO @ Sat, 03 Apr 2021 09:32:30: 17000000 INFO @ Sat, 03 Apr 2021 09:32:33: 14000000 INFO @ Sat, 03 Apr 2021 09:32:39: 12000000 INFO @ Sat, 03 Apr 2021 09:32:42: 18000000 INFO @ Sat, 03 Apr 2021 09:32:45: 15000000 INFO @ Sat, 03 Apr 2021 09:32:50: 13000000 INFO @ Sat, 03 Apr 2021 09:32:54: 19000000 INFO @ Sat, 03 Apr 2021 09:32:57: 16000000 INFO @ Sat, 03 Apr 2021 09:33:03: 14000000 INFO @ Sat, 03 Apr 2021 09:33:05: 20000000 INFO @ Sat, 03 Apr 2021 09:33:08: 17000000 INFO @ Sat, 03 Apr 2021 09:33:13: 15000000 INFO @ Sat, 03 Apr 2021 09:33:15: 21000000 INFO @ Sat, 03 Apr 2021 09:33:19: 18000000 INFO @ Sat, 03 Apr 2021 09:33:25: 16000000 INFO @ Sat, 03 Apr 2021 09:33:27: 22000000 INFO @ Sat, 03 Apr 2021 09:33:30: 19000000 INFO @ Sat, 03 Apr 2021 09:33:36: 17000000 INFO @ Sat, 03 Apr 2021 09:33:38: 23000000 INFO @ Sat, 03 Apr 2021 09:33:42: 20000000 INFO @ Sat, 03 Apr 2021 09:33:49: 18000000 INFO @ Sat, 03 Apr 2021 09:33:51: 24000000 INFO @ Sat, 03 Apr 2021 09:33:54: 21000000 INFO @ Sat, 03 Apr 2021 09:33:59: 19000000 INFO @ Sat, 03 Apr 2021 09:34:01: 25000000 INFO @ Sat, 03 Apr 2021 09:34:05: 22000000 INFO @ Sat, 03 Apr 2021 09:34:11: 20000000 INFO @ Sat, 03 Apr 2021 09:34:12: 26000000 INFO @ Sat, 03 Apr 2021 09:34:16: 23000000 INFO @ Sat, 03 Apr 2021 09:34:22: 21000000 INFO @ Sat, 03 Apr 2021 09:34:24: 27000000 INFO @ Sat, 03 Apr 2021 09:34:28: 24000000 INFO @ Sat, 03 Apr 2021 09:34:34: 22000000 INFO @ Sat, 03 Apr 2021 09:34:35: 28000000 INFO @ Sat, 03 Apr 2021 09:34:40: 25000000 INFO @ Sat, 03 Apr 2021 09:34:45: 23000000 INFO @ Sat, 03 Apr 2021 09:34:47: 29000000 INFO @ Sat, 03 Apr 2021 09:34:50: 26000000 INFO @ Sat, 03 Apr 2021 09:34:56: 24000000 INFO @ Sat, 03 Apr 2021 09:34:58: 30000000 INFO @ Sat, 03 Apr 2021 09:35:02: 27000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Sat, 03 Apr 2021 09:35:07: 25000000 INFO @ Sat, 03 Apr 2021 09:35:08: 31000000 INFO @ Sat, 03 Apr 2021 09:35:13: 28000000 INFO @ Sat, 03 Apr 2021 09:35:17: 26000000 INFO @ Sat, 03 Apr 2021 09:35:19: 32000000 INFO @ Sat, 03 Apr 2021 09:35:24: 29000000 INFO @ Sat, 03 Apr 2021 09:35:30: 27000000 INFO @ Sat, 03 Apr 2021 09:35:32: 33000000 INFO @ Sat, 03 Apr 2021 09:35:37: 30000000 INFO @ Sat, 03 Apr 2021 09:35:42: 28000000 INFO @ Sat, 03 Apr 2021 09:35:43: 34000000 INFO @ Sat, 03 Apr 2021 09:35:49: 31000000 INFO @ Sat, 03 Apr 2021 09:35:53: 29000000 INFO @ Sat, 03 Apr 2021 09:35:54: 35000000 INFO @ Sat, 03 Apr 2021 09:36:00: 32000000 INFO @ Sat, 03 Apr 2021 09:36:04: 36000000 INFO @ Sat, 03 Apr 2021 09:36:04: 30000000 INFO @ Sat, 03 Apr 2021 09:36:11: 33000000 INFO @ Sat, 03 Apr 2021 09:36:16: 37000000 INFO @ Sat, 03 Apr 2021 09:36:17: 31000000 INFO @ Sat, 03 Apr 2021 09:36:23: 34000000 INFO @ Sat, 03 Apr 2021 09:36:27: 38000000 INFO @ Sat, 03 Apr 2021 09:36:28: 32000000 INFO @ Sat, 03 Apr 2021 09:36:34: 35000000 INFO @ Sat, 03 Apr 2021 09:36:38: 39000000 INFO @ Sat, 03 Apr 2021 09:36:39: 33000000 BigWig に変換しました。 INFO @ Sat, 03 Apr 2021 09:36:45: 36000000 INFO @ Sat, 03 Apr 2021 09:36:50: 40000000 INFO @ Sat, 03 Apr 2021 09:36:51: 34000000 INFO @ Sat, 03 Apr 2021 09:36:56: 37000000 INFO @ Sat, 03 Apr 2021 09:37:00: 41000000 INFO @ Sat, 03 Apr 2021 09:37:00: 35000000 INFO @ Sat, 03 Apr 2021 09:37:06: 38000000 INFO @ Sat, 03 Apr 2021 09:37:09: 36000000 INFO @ Sat, 03 Apr 2021 09:37:10: 42000000 INFO @ Sat, 03 Apr 2021 09:37:14: 39000000 INFO @ Sat, 03 Apr 2021 09:37:19: 37000000 INFO @ Sat, 03 Apr 2021 09:37:20: 43000000 INFO @ Sat, 03 Apr 2021 09:37:26: 40000000 INFO @ Sat, 03 Apr 2021 09:37:30: 38000000 INFO @ Sat, 03 Apr 2021 09:37:31: 44000000 INFO @ Sat, 03 Apr 2021 09:37:38: 41000000 INFO @ Sat, 03 Apr 2021 09:37:42: 39000000 INFO @ Sat, 03 Apr 2021 09:37:44: 45000000 INFO @ Sat, 03 Apr 2021 09:37:50: 42000000 INFO @ Sat, 03 Apr 2021 09:37:54: 40000000 INFO @ Sat, 03 Apr 2021 09:37:57: 46000000 INFO @ Sat, 03 Apr 2021 09:38:02: 43000000 INFO @ Sat, 03 Apr 2021 09:38:05: 41000000 INFO @ Sat, 03 Apr 2021 09:38:08: 47000000 INFO @ Sat, 03 Apr 2021 09:38:12: 44000000 INFO @ Sat, 03 Apr 2021 09:38:16: 42000000 INFO @ Sat, 03 Apr 2021 09:38:19: 48000000 INFO @ Sat, 03 Apr 2021 09:38:23: 45000000 INFO @ Sat, 03 Apr 2021 09:38:26: 43000000 INFO @ Sat, 03 Apr 2021 09:38:30: 49000000 INFO @ Sat, 03 Apr 2021 09:38:35: 46000000 INFO @ Sat, 03 Apr 2021 09:38:36: 44000000 INFO @ Sat, 03 Apr 2021 09:38:41: 50000000 INFO @ Sat, 03 Apr 2021 09:38:46: 47000000 INFO @ Sat, 03 Apr 2021 09:38:47: 45000000 INFO @ Sat, 03 Apr 2021 09:38:51: 51000000 INFO @ Sat, 03 Apr 2021 09:38:57: 48000000 INFO @ Sat, 03 Apr 2021 09:38:58: 46000000 INFO @ Sat, 03 Apr 2021 09:38:58: #1 tag size is determined as 100 bps INFO @ Sat, 03 Apr 2021 09:38:58: #1 tag size = 100 INFO @ Sat, 03 Apr 2021 09:38:58: #1 total tags in treatment: 19976751 INFO @ Sat, 03 Apr 2021 09:38:58: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 09:38:58: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 09:38:59: #1 tags after filtering in treatment: 15186850 INFO @ Sat, 03 Apr 2021 09:38:59: #1 Redundant rate of treatment: 0.24 INFO @ Sat, 03 Apr 2021 09:38:59: #1 finished! INFO @ Sat, 03 Apr 2021 09:38:59: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 09:38:59: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 09:39:00: #2 number of paired peaks: 180 WARNING @ Sat, 03 Apr 2021 09:39:00: Fewer paired peaks (180) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 180 pairs to build model! INFO @ Sat, 03 Apr 2021 09:39:00: start model_add_line... INFO @ Sat, 03 Apr 2021 09:39:00: start X-correlation... INFO @ Sat, 03 Apr 2021 09:39:00: end of X-cor INFO @ Sat, 03 Apr 2021 09:39:00: #2 finished! INFO @ Sat, 03 Apr 2021 09:39:00: #2 predicted fragment length is 120 bps INFO @ Sat, 03 Apr 2021 09:39:00: #2 alternative fragment length(s) may be 120 bps INFO @ Sat, 03 Apr 2021 09:39:00: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX3282115/SRX3282115.05_model.r WARNING @ Sat, 03 Apr 2021 09:39:00: #2 Since the d (120) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 09:39:00: #2 You may need to consider one of the other alternative d(s): 120 WARNING @ Sat, 03 Apr 2021 09:39:00: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 09:39:00: #3 Call peaks... INFO @ Sat, 03 Apr 2021 09:39:00: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 09:39:08: 49000000 INFO @ Sat, 03 Apr 2021 09:39:09: 47000000 INFO @ Sat, 03 Apr 2021 09:39:19: 50000000 INFO @ Sat, 03 Apr 2021 09:39:20: 48000000 INFO @ Sat, 03 Apr 2021 09:39:29: 51000000 INFO @ Sat, 03 Apr 2021 09:39:30: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 09:39:30: 49000000 INFO @ Sat, 03 Apr 2021 09:39:36: #1 tag size is determined as 100 bps INFO @ Sat, 03 Apr 2021 09:39:36: #1 tag size = 100 INFO @ Sat, 03 Apr 2021 09:39:36: #1 total tags in treatment: 19976751 INFO @ Sat, 03 Apr 2021 09:39:36: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 09:39:36: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 09:39:36: #1 tags after filtering in treatment: 15186850 INFO @ Sat, 03 Apr 2021 09:39:36: #1 Redundant rate of treatment: 0.24 INFO @ Sat, 03 Apr 2021 09:39:36: #1 finished! INFO @ Sat, 03 Apr 2021 09:39:36: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 09:39:36: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 09:39:37: #2 number of paired peaks: 180 WARNING @ Sat, 03 Apr 2021 09:39:37: Fewer paired peaks (180) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 180 pairs to build model! INFO @ Sat, 03 Apr 2021 09:39:37: start model_add_line... INFO @ Sat, 03 Apr 2021 09:39:38: start X-correlation... INFO @ Sat, 03 Apr 2021 09:39:38: end of X-cor INFO @ Sat, 03 Apr 2021 09:39:38: #2 finished! INFO @ Sat, 03 Apr 2021 09:39:38: #2 predicted fragment length is 120 bps INFO @ Sat, 03 Apr 2021 09:39:38: #2 alternative fragment length(s) may be 120 bps INFO @ Sat, 03 Apr 2021 09:39:38: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX3282115/SRX3282115.10_model.r WARNING @ Sat, 03 Apr 2021 09:39:38: #2 Since the d (120) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 09:39:38: #2 You may need to consider one of the other alternative d(s): 120 WARNING @ Sat, 03 Apr 2021 09:39:38: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 09:39:38: #3 Call peaks... INFO @ Sat, 03 Apr 2021 09:39:38: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 09:39:40: 50000000 INFO @ Sat, 03 Apr 2021 09:39:45: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX3282115/SRX3282115.05_peaks.xls INFO @ Sat, 03 Apr 2021 09:39:45: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX3282115/SRX3282115.05_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 09:39:45: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX3282115/SRX3282115.05_summits.bed INFO @ Sat, 03 Apr 2021 09:39:45: Done! pass1 - making usageList (15 chroms): 2 millis pass2 - checking and writing primary data (6626 records, 4 fields): 10 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 09:39:48: 51000000 INFO @ Sat, 03 Apr 2021 09:39:55: #1 tag size is determined as 100 bps INFO @ Sat, 03 Apr 2021 09:39:55: #1 tag size = 100 INFO @ Sat, 03 Apr 2021 09:39:55: #1 total tags in treatment: 19976751 INFO @ Sat, 03 Apr 2021 09:39:55: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 09:39:55: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 09:39:55: #1 tags after filtering in treatment: 15186850 INFO @ Sat, 03 Apr 2021 09:39:55: #1 Redundant rate of treatment: 0.24 INFO @ Sat, 03 Apr 2021 09:39:55: #1 finished! INFO @ Sat, 03 Apr 2021 09:39:55: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 09:39:55: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 09:39:56: #2 number of paired peaks: 180 WARNING @ Sat, 03 Apr 2021 09:39:56: Fewer paired peaks (180) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 180 pairs to build model! INFO @ Sat, 03 Apr 2021 09:39:56: start model_add_line... INFO @ Sat, 03 Apr 2021 09:39:56: start X-correlation... INFO @ Sat, 03 Apr 2021 09:39:56: end of X-cor INFO @ Sat, 03 Apr 2021 09:39:56: #2 finished! INFO @ Sat, 03 Apr 2021 09:39:56: #2 predicted fragment length is 120 bps INFO @ Sat, 03 Apr 2021 09:39:56: #2 alternative fragment length(s) may be 120 bps INFO @ Sat, 03 Apr 2021 09:39:56: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX3282115/SRX3282115.20_model.r WARNING @ Sat, 03 Apr 2021 09:39:56: #2 Since the d (120) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 09:39:56: #2 You may need to consider one of the other alternative d(s): 120 WARNING @ Sat, 03 Apr 2021 09:39:56: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 09:39:56: #3 Call peaks... INFO @ Sat, 03 Apr 2021 09:39:56: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 09:40:06: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 09:40:21: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX3282115/SRX3282115.10_peaks.xls INFO @ Sat, 03 Apr 2021 09:40:21: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX3282115/SRX3282115.10_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 09:40:21: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX3282115/SRX3282115.10_summits.bed INFO @ Sat, 03 Apr 2021 09:40:21: Done! pass1 - making usageList (15 chroms): 1 millis pass2 - checking and writing primary data (3438 records, 4 fields): 6 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 09:40:25: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 09:40:39: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX3282115/SRX3282115.20_peaks.xls INFO @ Sat, 03 Apr 2021 09:40:39: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX3282115/SRX3282115.20_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 09:40:39: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX3282115/SRX3282115.20_summits.bed INFO @ Sat, 03 Apr 2021 09:40:39: Done! pass1 - making usageList (13 chroms): 1 millis pass2 - checking and writing primary data (1243 records, 4 fields): 3 millis CompletedMACS2peakCalling