Job ID = 10175297 sra ファイルのダウンロード中... Completed: 1563726K bytes transferred in 90 seconds (141065K bits/sec), in 1 file. sra ファイルのダウンロードが完了しました。 Read layout: SINGLE fastq に変換中... Written 85937956 spots for /home/okishinya/chipatlas/results/dm3/SRX3159495/SRR6004225.sra Written 85937956 spots total rm: cannot remove `[DSE]RX*': そのようなファイルやディレクトリはありません rm: cannot remove `[DSE]RR*.fastq': そのようなファイルやディレクトリはありません fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:38:28 85937956 reads; of these: 85937956 (100.00%) were unpaired; of these: 1886653 (2.20%) aligned 0 times 58197466 (67.72%) aligned exactly 1 time 25853837 (30.08%) aligned >1 times 97.80% overall alignment rate Time searching: 00:38:28 Overall time: 00:38:28 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 36 files... [bam_rmdupse_core] 19479706 / 84051303 = 0.2318 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Mon, 06 Nov 2017 13:14:32: # Command line: callpeak -t SRX3159495.bam -f BAM -g dm -n SRX3159495.20 -q 1e-20 # ARGUMENTS LIST: # name = SRX3159495.20 # format = BAM # ChIP-seq file = ['SRX3159495.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Mon, 06 Nov 2017 13:14:32: # Command line: callpeak -t SRX3159495.bam -f BAM -g dm -n SRX3159495.10 -q 1e-10 # ARGUMENTS LIST: # name = SRX3159495.10 # format = BAM # ChIP-seq file = ['SRX3159495.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Mon, 06 Nov 2017 13:14:32: #1 read tag files... INFO @ Mon, 06 Nov 2017 13:14:32: #1 read tag files... INFO @ Mon, 06 Nov 2017 13:14:32: #1 read treatment tags... INFO @ Mon, 06 Nov 2017 13:14:32: #1 read treatment tags... INFO @ Mon, 06 Nov 2017 13:14:32: # Command line: callpeak -t SRX3159495.bam -f BAM -g dm -n SRX3159495.05 -q 1e-05 # ARGUMENTS LIST: # name = SRX3159495.05 # format = BAM # ChIP-seq file = ['SRX3159495.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Mon, 06 Nov 2017 13:14:32: #1 read tag files... INFO @ Mon, 06 Nov 2017 13:14:32: #1 read treatment tags... INFO @ Mon, 06 Nov 2017 13:14:39: 1000000 INFO @ Mon, 06 Nov 2017 13:14:39: 1000000 INFO @ Mon, 06 Nov 2017 13:14:39: 1000000 INFO @ Mon, 06 Nov 2017 13:14:45: 2000000 INFO @ Mon, 06 Nov 2017 13:14:45: 2000000 INFO @ Mon, 06 Nov 2017 13:14:46: 2000000 INFO @ Mon, 06 Nov 2017 13:14:52: 3000000 INFO @ Mon, 06 Nov 2017 13:14:52: 3000000 INFO @ Mon, 06 Nov 2017 13:14:52: 3000000 INFO @ Mon, 06 Nov 2017 13:14:59: 4000000 INFO @ Mon, 06 Nov 2017 13:14:59: 4000000 INFO @ Mon, 06 Nov 2017 13:14:59: 4000000 INFO @ Mon, 06 Nov 2017 13:15:05: 5000000 INFO @ Mon, 06 Nov 2017 13:15:06: 5000000 INFO @ Mon, 06 Nov 2017 13:15:06: 5000000 INFO @ Mon, 06 Nov 2017 13:15:12: 6000000 INFO @ Mon, 06 Nov 2017 13:15:12: 6000000 INFO @ Mon, 06 Nov 2017 13:15:12: 6000000 INFO @ Mon, 06 Nov 2017 13:15:19: 7000000 INFO @ Mon, 06 Nov 2017 13:15:19: 7000000 INFO @ Mon, 06 Nov 2017 13:15:19: 7000000 INFO @ Mon, 06 Nov 2017 13:15:26: 8000000 INFO @ Mon, 06 Nov 2017 13:15:26: 8000000 INFO @ Mon, 06 Nov 2017 13:15:26: 8000000 INFO @ Mon, 06 Nov 2017 13:15:32: 9000000 INFO @ Mon, 06 Nov 2017 13:15:33: 9000000 INFO @ Mon, 06 Nov 2017 13:15:33: 9000000 INFO @ Mon, 06 Nov 2017 13:15:39: 10000000 INFO @ Mon, 06 Nov 2017 13:15:40: 10000000 INFO @ Mon, 06 Nov 2017 13:15:40: 10000000 INFO @ Mon, 06 Nov 2017 13:15:46: 11000000 INFO @ Mon, 06 Nov 2017 13:15:46: 11000000 INFO @ Mon, 06 Nov 2017 13:15:47: 11000000 INFO @ Mon, 06 Nov 2017 13:15:53: 12000000 INFO @ Mon, 06 Nov 2017 13:15:53: 12000000 INFO @ Mon, 06 Nov 2017 13:15:54: 12000000 INFO @ Mon, 06 Nov 2017 13:16:00: 13000000 INFO @ Mon, 06 Nov 2017 13:16:00: 13000000 INFO @ Mon, 06 Nov 2017 13:16:00: 13000000 INFO @ Mon, 06 Nov 2017 13:16:07: 14000000 INFO @ Mon, 06 Nov 2017 13:16:07: 14000000 INFO @ Mon, 06 Nov 2017 13:16:07: 14000000 INFO @ Mon, 06 Nov 2017 13:16:14: 15000000 INFO @ Mon, 06 Nov 2017 13:16:14: 15000000 INFO @ Mon, 06 Nov 2017 13:16:14: 15000000 INFO @ Mon, 06 Nov 2017 13:16:20: 16000000 INFO @ Mon, 06 Nov 2017 13:16:20: 16000000 INFO @ Mon, 06 Nov 2017 13:16:21: 16000000 INFO @ Mon, 06 Nov 2017 13:16:26: 17000000 INFO @ Mon, 06 Nov 2017 13:16:27: 17000000 INFO @ Mon, 06 Nov 2017 13:16:27: 17000000 INFO @ Mon, 06 Nov 2017 13:16:33: 18000000 INFO @ Mon, 06 Nov 2017 13:16:33: 18000000 INFO @ Mon, 06 Nov 2017 13:16:34: 18000000 INFO @ Mon, 06 Nov 2017 13:16:39: 19000000 INFO @ Mon, 06 Nov 2017 13:16:39: 19000000 INFO @ Mon, 06 Nov 2017 13:16:41: 19000000 INFO @ Mon, 06 Nov 2017 13:16:46: 20000000 INFO @ Mon, 06 Nov 2017 13:16:46: 20000000 INFO @ Mon, 06 Nov 2017 13:16:47: 20000000 INFO @ Mon, 06 Nov 2017 13:16:52: 21000000 INFO @ Mon, 06 Nov 2017 13:16:52: 21000000 INFO @ Mon, 06 Nov 2017 13:16:54: 21000000 INFO @ Mon, 06 Nov 2017 13:16:58: 22000000 INFO @ Mon, 06 Nov 2017 13:16:59: 22000000 INFO @ Mon, 06 Nov 2017 13:17:00: 22000000 INFO @ Mon, 06 Nov 2017 13:17:05: 23000000 INFO @ Mon, 06 Nov 2017 13:17:05: 23000000 INFO @ Mon, 06 Nov 2017 13:17:07: 23000000 INFO @ Mon, 06 Nov 2017 13:17:11: 24000000 INFO @ Mon, 06 Nov 2017 13:17:11: 24000000 INFO @ Mon, 06 Nov 2017 13:17:14: 24000000 INFO @ Mon, 06 Nov 2017 13:17:18: 25000000 INFO @ Mon, 06 Nov 2017 13:17:18: 25000000 INFO @ Mon, 06 Nov 2017 13:17:20: 25000000 INFO @ Mon, 06 Nov 2017 13:17:24: 26000000 INFO @ Mon, 06 Nov 2017 13:17:24: 26000000 INFO @ Mon, 06 Nov 2017 13:17:27: 26000000 INFO @ Mon, 06 Nov 2017 13:17:30: 27000000 INFO @ Mon, 06 Nov 2017 13:17:30: 27000000 INFO @ Mon, 06 Nov 2017 13:17:33: 27000000 INFO @ Mon, 06 Nov 2017 13:17:37: 28000000 INFO @ Mon, 06 Nov 2017 13:17:37: 28000000 INFO @ Mon, 06 Nov 2017 13:17:40: 28000000 INFO @ Mon, 06 Nov 2017 13:17:43: 29000000 INFO @ Mon, 06 Nov 2017 13:17:43: 29000000 INFO @ Mon, 06 Nov 2017 13:17:46: 29000000 INFO @ Mon, 06 Nov 2017 13:17:49: 30000000 INFO @ Mon, 06 Nov 2017 13:17:49: 30000000 INFO @ Mon, 06 Nov 2017 13:17:53: 30000000 INFO @ Mon, 06 Nov 2017 13:17:56: 31000000 INFO @ Mon, 06 Nov 2017 13:17:56: 31000000 INFO @ Mon, 06 Nov 2017 13:17:59: 31000000 INFO @ Mon, 06 Nov 2017 13:18:02: 32000000 INFO @ Mon, 06 Nov 2017 13:18:02: 32000000 INFO @ Mon, 06 Nov 2017 13:18:06: 32000000 INFO @ Mon, 06 Nov 2017 13:18:08: 33000000 INFO @ Mon, 06 Nov 2017 13:18:08: 33000000 INFO @ Mon, 06 Nov 2017 13:18:13: 33000000 INFO @ Mon, 06 Nov 2017 13:18:15: 34000000 INFO @ Mon, 06 Nov 2017 13:18:15: 34000000 INFO @ Mon, 06 Nov 2017 13:18:19: 34000000 INFO @ Mon, 06 Nov 2017 13:18:21: 35000000 INFO @ Mon, 06 Nov 2017 13:18:21: 35000000 INFO @ Mon, 06 Nov 2017 13:18:26: 35000000 INFO @ Mon, 06 Nov 2017 13:18:27: 36000000 INFO @ Mon, 06 Nov 2017 13:18:27: 36000000 INFO @ Mon, 06 Nov 2017 13:18:32: 36000000 INFO @ Mon, 06 Nov 2017 13:18:34: 37000000 INFO @ Mon, 06 Nov 2017 13:18:34: 37000000 INFO @ Mon, 06 Nov 2017 13:18:39: 37000000 INFO @ Mon, 06 Nov 2017 13:18:40: 38000000 INFO @ Mon, 06 Nov 2017 13:18:40: 38000000 INFO @ Mon, 06 Nov 2017 13:18:45: 38000000 INFO @ Mon, 06 Nov 2017 13:18:46: 39000000 INFO @ Mon, 06 Nov 2017 13:18:46: 39000000 INFO @ Mon, 06 Nov 2017 13:18:52: 39000000 INFO @ Mon, 06 Nov 2017 13:18:53: 40000000 INFO @ Mon, 06 Nov 2017 13:18:53: 40000000 INFO @ Mon, 06 Nov 2017 13:18:58: 40000000 INFO @ Mon, 06 Nov 2017 13:18:59: 41000000 INFO @ Mon, 06 Nov 2017 13:18:59: 41000000 INFO @ Mon, 06 Nov 2017 13:19:05: 41000000 INFO @ Mon, 06 Nov 2017 13:19:05: 42000000 INFO @ Mon, 06 Nov 2017 13:19:05: 42000000 INFO @ Mon, 06 Nov 2017 13:19:11: 42000000 INFO @ Mon, 06 Nov 2017 13:19:12: 43000000 INFO @ Mon, 06 Nov 2017 13:19:12: 43000000 INFO @ Mon, 06 Nov 2017 13:19:18: 43000000 INFO @ Mon, 06 Nov 2017 13:19:18: 44000000 INFO @ Mon, 06 Nov 2017 13:19:18: 44000000 INFO @ Mon, 06 Nov 2017 13:19:24: 45000000 INFO @ Mon, 06 Nov 2017 13:19:25: 45000000 INFO @ Mon, 06 Nov 2017 13:19:25: 44000000 INFO @ Mon, 06 Nov 2017 13:19:31: 46000000 INFO @ Mon, 06 Nov 2017 13:19:31: 46000000 INFO @ Mon, 06 Nov 2017 13:19:31: 45000000 INFO @ Mon, 06 Nov 2017 13:19:37: 47000000 INFO @ Mon, 06 Nov 2017 13:19:37: 47000000 INFO @ Mon, 06 Nov 2017 13:19:38: 46000000 INFO @ Mon, 06 Nov 2017 13:19:44: 48000000 INFO @ Mon, 06 Nov 2017 13:19:44: 48000000 INFO @ Mon, 06 Nov 2017 13:19:45: 47000000 INFO @ Mon, 06 Nov 2017 13:19:51: 49000000 INFO @ Mon, 06 Nov 2017 13:19:51: 49000000 INFO @ Mon, 06 Nov 2017 13:19:52: 48000000 INFO @ Mon, 06 Nov 2017 13:19:58: 50000000 INFO @ Mon, 06 Nov 2017 13:19:58: 50000000 INFO @ Mon, 06 Nov 2017 13:19:59: 49000000 INFO @ Mon, 06 Nov 2017 13:20:05: 51000000 INFO @ Mon, 06 Nov 2017 13:20:05: 51000000 INFO @ Mon, 06 Nov 2017 13:20:06: 50000000 INFO @ Mon, 06 Nov 2017 13:20:12: 52000000 INFO @ Mon, 06 Nov 2017 13:20:12: 52000000 INFO @ Mon, 06 Nov 2017 13:20:13: 51000000 INFO @ Mon, 06 Nov 2017 13:20:20: 53000000 INFO @ Mon, 06 Nov 2017 13:20:20: 53000000 INFO @ Mon, 06 Nov 2017 13:20:21: 52000000 INFO @ Mon, 06 Nov 2017 13:20:27: 54000000 INFO @ Mon, 06 Nov 2017 13:20:27: 54000000 INFO @ Mon, 06 Nov 2017 13:20:28: 53000000 INFO @ Mon, 06 Nov 2017 13:20:34: 55000000 INFO @ Mon, 06 Nov 2017 13:20:34: 55000000 INFO @ Mon, 06 Nov 2017 13:20:35: 54000000 INFO @ Mon, 06 Nov 2017 13:20:41: 56000000 INFO @ Mon, 06 Nov 2017 13:20:41: 56000000 INFO @ Mon, 06 Nov 2017 13:20:42: 55000000 INFO @ Mon, 06 Nov 2017 13:20:48: 57000000 INFO @ Mon, 06 Nov 2017 13:20:48: 57000000 INFO @ Mon, 06 Nov 2017 13:20:50: 56000000 INFO @ Mon, 06 Nov 2017 13:20:56: 58000000 INFO @ Mon, 06 Nov 2017 13:20:56: 58000000 INFO @ Mon, 06 Nov 2017 13:20:57: 57000000 INFO @ Mon, 06 Nov 2017 13:21:03: 59000000 INFO @ Mon, 06 Nov 2017 13:21:03: 59000000 INFO @ Mon, 06 Nov 2017 13:21:04: 58000000 INFO @ Mon, 06 Nov 2017 13:21:09: 60000000 INFO @ Mon, 06 Nov 2017 13:21:09: 60000000 INFO @ Mon, 06 Nov 2017 13:21:10: 59000000 INFO @ Mon, 06 Nov 2017 13:21:15: 61000000 INFO @ Mon, 06 Nov 2017 13:21:15: 61000000 INFO @ Mon, 06 Nov 2017 13:21:17: 60000000 INFO @ Mon, 06 Nov 2017 13:21:22: 62000000 INFO @ Mon, 06 Nov 2017 13:21:22: 62000000 INFO @ Mon, 06 Nov 2017 13:21:24: 61000000 INFO @ Mon, 06 Nov 2017 13:21:28: 63000000 INFO @ Mon, 06 Nov 2017 13:21:28: 63000000 INFO @ Mon, 06 Nov 2017 13:21:30: 62000000 INFO @ Mon, 06 Nov 2017 13:21:34: 64000000 INFO @ Mon, 06 Nov 2017 13:21:34: 64000000 INFO @ Mon, 06 Nov 2017 13:21:37: 63000000 INFO @ Mon, 06 Nov 2017 13:21:39: #1 tag size is determined as 51 bps INFO @ Mon, 06 Nov 2017 13:21:39: #1 tag size = 51 INFO @ Mon, 06 Nov 2017 13:21:39: #1 total tags in treatment: 64571597 INFO @ Mon, 06 Nov 2017 13:21:39: #1 user defined the maximum tags... INFO @ Mon, 06 Nov 2017 13:21:39: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Mon, 06 Nov 2017 13:21:39: #1 tag size is determined as 51 bps INFO @ Mon, 06 Nov 2017 13:21:39: #1 tag size = 51 INFO @ Mon, 06 Nov 2017 13:21:39: #1 total tags in treatment: 64571597 INFO @ Mon, 06 Nov 2017 13:21:39: #1 user defined the maximum tags... INFO @ Mon, 06 Nov 2017 13:21:39: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Mon, 06 Nov 2017 13:21:40: #1 tags after filtering in treatment: 64571597 INFO @ Mon, 06 Nov 2017 13:21:40: #1 Redundant rate of treatment: 0.00 INFO @ Mon, 06 Nov 2017 13:21:40: #1 tags after filtering in treatment: 64571597 INFO @ Mon, 06 Nov 2017 13:21:40: #1 finished! INFO @ Mon, 06 Nov 2017 13:21:40: #1 Redundant rate of treatment: 0.00 INFO @ Mon, 06 Nov 2017 13:21:40: #2 Build Peak Model... INFO @ Mon, 06 Nov 2017 13:21:40: #1 finished! INFO @ Mon, 06 Nov 2017 13:21:40: #2 Build Peak Model... INFO @ Mon, 06 Nov 2017 13:21:40: #2 looking for paired plus/minus strand peaks... INFO @ Mon, 06 Nov 2017 13:21:40: #2 looking for paired plus/minus strand peaks... INFO @ Mon, 06 Nov 2017 13:21:43: 64000000 INFO @ Mon, 06 Nov 2017 13:21:44: #2 number of paired peaks: 0 WARNING @ Mon, 06 Nov 2017 13:21:44: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Mon, 06 Nov 2017 13:21:44: Process for pairing-model is terminated! cat: SRX3159495.20_peaks.narrowPeak: そのようなファイルやディレクトリはありません pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX3159495.20_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX3159495.20_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX3159495.20_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling INFO @ Mon, 06 Nov 2017 13:21:46: #2 number of paired peaks: 0 WARNING @ Mon, 06 Nov 2017 13:21:46: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Mon, 06 Nov 2017 13:21:46: Process for pairing-model is terminated! cat: SRX3159495.05_peaks.narrowPeak: そのようなファイルやディレクトリはありません pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX3159495.05_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX3159495.05_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX3159495.05_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling INFO @ Mon, 06 Nov 2017 13:21:47: #1 tag size is determined as 51 bps INFO @ Mon, 06 Nov 2017 13:21:47: #1 tag size = 51 INFO @ Mon, 06 Nov 2017 13:21:47: #1 total tags in treatment: 64571597 INFO @ Mon, 06 Nov 2017 13:21:47: #1 user defined the maximum tags... INFO @ Mon, 06 Nov 2017 13:21:47: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Mon, 06 Nov 2017 13:21:49: #1 tags after filtering in treatment: 64571597 INFO @ Mon, 06 Nov 2017 13:21:49: #1 Redundant rate of treatment: 0.00 INFO @ Mon, 06 Nov 2017 13:21:49: #1 finished! INFO @ Mon, 06 Nov 2017 13:21:49: #2 Build Peak Model... INFO @ Mon, 06 Nov 2017 13:21:49: #2 looking for paired plus/minus strand peaks... INFO @ Mon, 06 Nov 2017 13:21:53: #2 number of paired peaks: 0 WARNING @ Mon, 06 Nov 2017 13:21:53: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Mon, 06 Nov 2017 13:21:53: Process for pairing-model is terminated! cat: SRX3159495.10_peaks.narrowPeak: そのようなファイルやディレクトリはありません pass1 - making usageList (0 chroms): 0 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX3159495.10_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX3159495.10_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX3159495.10_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。