Job ID = 12265175 SRX = SRX3104592 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 42554815 spots for SRR5946197/SRR5946197.sra Written 42554815 spots for SRR5946197/SRR5946197.sra fastq に変換しました。 bowtie でマッピング中... Your job 12265721 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:09:10 42554815 reads; of these: 42554815 (100.00%) were paired; of these: 12555884 (29.51%) aligned concordantly 0 times 24024989 (56.46%) aligned concordantly exactly 1 time 5973942 (14.04%) aligned concordantly >1 times ---- 12555884 pairs aligned concordantly 0 times; of these: 6093829 (48.53%) aligned discordantly 1 time ---- 6462055 pairs aligned 0 times concordantly or discordantly; of these: 12924110 mates make up the pairs; of these: 10003447 (77.40%) aligned 0 times 1084954 (8.39%) aligned exactly 1 time 1835709 (14.20%) aligned >1 times 88.25% overall alignment rate Time searching: 01:09:10 Overall time: 01:09:10 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 32 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 5338638 / 35900296 = 0.1487 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 08:14:18: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX3104592/SRX3104592.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX3104592/SRX3104592.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX3104592/SRX3104592.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX3104592/SRX3104592.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 08:14:18: #1 read tag files... INFO @ Sat, 03 Apr 2021 08:14:18: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 08:14:24: 1000000 INFO @ Sat, 03 Apr 2021 08:14:29: 2000000 INFO @ Sat, 03 Apr 2021 08:14:35: 3000000 INFO @ Sat, 03 Apr 2021 08:14:41: 4000000 WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 08:14:47: 5000000 INFO @ Sat, 03 Apr 2021 08:14:48: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX3104592/SRX3104592.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX3104592/SRX3104592.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX3104592/SRX3104592.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX3104592/SRX3104592.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 08:14:48: #1 read tag files... INFO @ Sat, 03 Apr 2021 08:14:48: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 08:14:54: 6000000 INFO @ Sat, 03 Apr 2021 08:14:54: 1000000 INFO @ Sat, 03 Apr 2021 08:15:01: 7000000 INFO @ Sat, 03 Apr 2021 08:15:01: 2000000 INFO @ Sat, 03 Apr 2021 08:15:07: 8000000 INFO @ Sat, 03 Apr 2021 08:15:08: 3000000 INFO @ Sat, 03 Apr 2021 08:15:14: 9000000 INFO @ Sat, 03 Apr 2021 08:15:14: 4000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 08:15:18: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX3104592/SRX3104592.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX3104592/SRX3104592.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX3104592/SRX3104592.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX3104592/SRX3104592.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 08:15:18: #1 read tag files... INFO @ Sat, 03 Apr 2021 08:15:18: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 08:15:21: 10000000 INFO @ Sat, 03 Apr 2021 08:15:21: 5000000 INFO @ Sat, 03 Apr 2021 08:15:24: 1000000 INFO @ Sat, 03 Apr 2021 08:15:27: 11000000 INFO @ Sat, 03 Apr 2021 08:15:28: 6000000 INFO @ Sat, 03 Apr 2021 08:15:31: 2000000 INFO @ Sat, 03 Apr 2021 08:15:34: 12000000 INFO @ Sat, 03 Apr 2021 08:15:35: 7000000 INFO @ Sat, 03 Apr 2021 08:15:38: 3000000 INFO @ Sat, 03 Apr 2021 08:15:40: 13000000 INFO @ Sat, 03 Apr 2021 08:15:42: 8000000 INFO @ Sat, 03 Apr 2021 08:15:45: 4000000 INFO @ Sat, 03 Apr 2021 08:15:47: 14000000 INFO @ Sat, 03 Apr 2021 08:15:48: 9000000 INFO @ Sat, 03 Apr 2021 08:15:52: 5000000 INFO @ Sat, 03 Apr 2021 08:15:54: 15000000 INFO @ Sat, 03 Apr 2021 08:15:55: 10000000 INFO @ Sat, 03 Apr 2021 08:15:58: 6000000 INFO @ Sat, 03 Apr 2021 08:16:00: 16000000 INFO @ Sat, 03 Apr 2021 08:16:02: 11000000 INFO @ Sat, 03 Apr 2021 08:16:05: 7000000 INFO @ Sat, 03 Apr 2021 08:16:07: 17000000 INFO @ Sat, 03 Apr 2021 08:16:09: 12000000 INFO @ Sat, 03 Apr 2021 08:16:12: 8000000 INFO @ Sat, 03 Apr 2021 08:16:14: 18000000 INFO @ Sat, 03 Apr 2021 08:16:16: 13000000 INFO @ Sat, 03 Apr 2021 08:16:19: 9000000 INFO @ Sat, 03 Apr 2021 08:16:20: 19000000 INFO @ Sat, 03 Apr 2021 08:16:23: 14000000 INFO @ Sat, 03 Apr 2021 08:16:26: 10000000 INFO @ Sat, 03 Apr 2021 08:16:27: 20000000 INFO @ Sat, 03 Apr 2021 08:16:30: 15000000 INFO @ Sat, 03 Apr 2021 08:16:32: 11000000 INFO @ Sat, 03 Apr 2021 08:16:34: 21000000 INFO @ Sat, 03 Apr 2021 08:16:36: 16000000 INFO @ Sat, 03 Apr 2021 08:16:39: 12000000 INFO @ Sat, 03 Apr 2021 08:16:40: 22000000 INFO @ Sat, 03 Apr 2021 08:16:43: 17000000 INFO @ Sat, 03 Apr 2021 08:16:46: 13000000 INFO @ Sat, 03 Apr 2021 08:16:47: 23000000 INFO @ Sat, 03 Apr 2021 08:16:50: 18000000 INFO @ Sat, 03 Apr 2021 08:16:53: 14000000 INFO @ Sat, 03 Apr 2021 08:16:54: 24000000 INFO @ Sat, 03 Apr 2021 08:16:57: 19000000 INFO @ Sat, 03 Apr 2021 08:17:00: 15000000 INFO @ Sat, 03 Apr 2021 08:17:00: 25000000 INFO @ Sat, 03 Apr 2021 08:17:04: 20000000 INFO @ Sat, 03 Apr 2021 08:17:06: 16000000 INFO @ Sat, 03 Apr 2021 08:17:07: 26000000 INFO @ Sat, 03 Apr 2021 08:17:11: 21000000 INFO @ Sat, 03 Apr 2021 08:17:13: 17000000 INFO @ Sat, 03 Apr 2021 08:17:14: 27000000 INFO @ Sat, 03 Apr 2021 08:17:17: 22000000 INFO @ Sat, 03 Apr 2021 08:17:20: 18000000 INFO @ Sat, 03 Apr 2021 08:17:20: 28000000 INFO @ Sat, 03 Apr 2021 08:17:24: 23000000 INFO @ Sat, 03 Apr 2021 08:17:27: 19000000 INFO @ Sat, 03 Apr 2021 08:17:27: 29000000 INFO @ Sat, 03 Apr 2021 08:17:31: 24000000 INFO @ Sat, 03 Apr 2021 08:17:33: 30000000 INFO @ Sat, 03 Apr 2021 08:17:34: 20000000 INFO @ Sat, 03 Apr 2021 08:17:38: 25000000 INFO @ Sat, 03 Apr 2021 08:17:40: 31000000 INFO @ Sat, 03 Apr 2021 08:17:41: 21000000 INFO @ Sat, 03 Apr 2021 08:17:45: 26000000 INFO @ Sat, 03 Apr 2021 08:17:47: 32000000 INFO @ Sat, 03 Apr 2021 08:17:47: 22000000 INFO @ Sat, 03 Apr 2021 08:17:52: 27000000 INFO @ Sat, 03 Apr 2021 08:17:53: 33000000 INFO @ Sat, 03 Apr 2021 08:17:54: 23000000 INFO @ Sat, 03 Apr 2021 08:17:58: 28000000 INFO @ Sat, 03 Apr 2021 08:18:00: 34000000 INFO @ Sat, 03 Apr 2021 08:18:01: 24000000 INFO @ Sat, 03 Apr 2021 08:18:05: 29000000 INFO @ Sat, 03 Apr 2021 08:18:06: 35000000 INFO @ Sat, 03 Apr 2021 08:18:08: 25000000 INFO @ Sat, 03 Apr 2021 08:18:12: 30000000 INFO @ Sat, 03 Apr 2021 08:18:13: 36000000 INFO @ Sat, 03 Apr 2021 08:18:15: 26000000 INFO @ Sat, 03 Apr 2021 08:18:19: 31000000 INFO @ Sat, 03 Apr 2021 08:18:20: 37000000 INFO @ Sat, 03 Apr 2021 08:18:22: 27000000 INFO @ Sat, 03 Apr 2021 08:18:26: 32000000 INFO @ Sat, 03 Apr 2021 08:18:26: 38000000 INFO @ Sat, 03 Apr 2021 08:18:29: 28000000 INFO @ Sat, 03 Apr 2021 08:18:33: 33000000 INFO @ Sat, 03 Apr 2021 08:18:33: 39000000 INFO @ Sat, 03 Apr 2021 08:18:35: 29000000 INFO @ Sat, 03 Apr 2021 08:18:39: 40000000 INFO @ Sat, 03 Apr 2021 08:18:39: 34000000 INFO @ Sat, 03 Apr 2021 08:18:42: 30000000 INFO @ Sat, 03 Apr 2021 08:18:46: 41000000 INFO @ Sat, 03 Apr 2021 08:18:46: 35000000 INFO @ Sat, 03 Apr 2021 08:18:49: 31000000 INFO @ Sat, 03 Apr 2021 08:18:52: 42000000 INFO @ Sat, 03 Apr 2021 08:18:53: 36000000 INFO @ Sat, 03 Apr 2021 08:18:56: 32000000 INFO @ Sat, 03 Apr 2021 08:18:59: 43000000 INFO @ Sat, 03 Apr 2021 08:18:59: 37000000 INFO @ Sat, 03 Apr 2021 08:19:03: 33000000 INFO @ Sat, 03 Apr 2021 08:19:06: 44000000 INFO @ Sat, 03 Apr 2021 08:19:06: 38000000 INFO @ Sat, 03 Apr 2021 08:19:09: 34000000 INFO @ Sat, 03 Apr 2021 08:19:12: 45000000 INFO @ Sat, 03 Apr 2021 08:19:13: 39000000 INFO @ Sat, 03 Apr 2021 08:19:16: 35000000 INFO @ Sat, 03 Apr 2021 08:19:19: 46000000 INFO @ Sat, 03 Apr 2021 08:19:20: 40000000 INFO @ Sat, 03 Apr 2021 08:19:23: 36000000 INFO @ Sat, 03 Apr 2021 08:19:25: 47000000 INFO @ Sat, 03 Apr 2021 08:19:26: 41000000 INFO @ Sat, 03 Apr 2021 08:19:29: 37000000 INFO @ Sat, 03 Apr 2021 08:19:32: 48000000 INFO @ Sat, 03 Apr 2021 08:19:33: 42000000 INFO @ Sat, 03 Apr 2021 08:19:36: 38000000 INFO @ Sat, 03 Apr 2021 08:19:38: 49000000 INFO @ Sat, 03 Apr 2021 08:19:39: 43000000 INFO @ Sat, 03 Apr 2021 08:19:43: 39000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Sat, 03 Apr 2021 08:19:45: 50000000 INFO @ Sat, 03 Apr 2021 08:19:46: 44000000 INFO @ Sat, 03 Apr 2021 08:19:49: 40000000 INFO @ Sat, 03 Apr 2021 08:19:51: 51000000 INFO @ Sat, 03 Apr 2021 08:19:53: 45000000 INFO @ Sat, 03 Apr 2021 08:19:56: 41000000 INFO @ Sat, 03 Apr 2021 08:19:58: 52000000 INFO @ Sat, 03 Apr 2021 08:19:59: 46000000 INFO @ Sat, 03 Apr 2021 08:20:03: 42000000 INFO @ Sat, 03 Apr 2021 08:20:04: 53000000 INFO @ Sat, 03 Apr 2021 08:20:06: 47000000 INFO @ Sat, 03 Apr 2021 08:20:09: 43000000 INFO @ Sat, 03 Apr 2021 08:20:11: 54000000 INFO @ Sat, 03 Apr 2021 08:20:12: 48000000 INFO @ Sat, 03 Apr 2021 08:20:16: 44000000 INFO @ Sat, 03 Apr 2021 08:20:18: 55000000 INFO @ Sat, 03 Apr 2021 08:20:19: 49000000 INFO @ Sat, 03 Apr 2021 08:20:22: 45000000 INFO @ Sat, 03 Apr 2021 08:20:25: 56000000 INFO @ Sat, 03 Apr 2021 08:20:25: 50000000 INFO @ Sat, 03 Apr 2021 08:20:29: 46000000 INFO @ Sat, 03 Apr 2021 08:20:31: 57000000 INFO @ Sat, 03 Apr 2021 08:20:32: 51000000 INFO @ Sat, 03 Apr 2021 08:20:35: 47000000 INFO @ Sat, 03 Apr 2021 08:20:38: 58000000 INFO @ Sat, 03 Apr 2021 08:20:39: 52000000 INFO @ Sat, 03 Apr 2021 08:20:41: 48000000 INFO @ Sat, 03 Apr 2021 08:20:45: 59000000 INFO @ Sat, 03 Apr 2021 08:20:45: 53000000 INFO @ Sat, 03 Apr 2021 08:20:48: 49000000 INFO @ Sat, 03 Apr 2021 08:20:51: 60000000 INFO @ Sat, 03 Apr 2021 08:20:52: 54000000 INFO @ Sat, 03 Apr 2021 08:20:55: 50000000 INFO @ Sat, 03 Apr 2021 08:20:58: 61000000 BigWig に変換しました。 INFO @ Sat, 03 Apr 2021 08:20:59: 55000000 INFO @ Sat, 03 Apr 2021 08:21:01: 51000000 INFO @ Sat, 03 Apr 2021 08:21:05: 62000000 INFO @ Sat, 03 Apr 2021 08:21:06: 56000000 INFO @ Sat, 03 Apr 2021 08:21:08: 52000000 INFO @ Sat, 03 Apr 2021 08:21:12: 63000000 INFO @ Sat, 03 Apr 2021 08:21:13: 57000000 INFO @ Sat, 03 Apr 2021 08:21:15: 53000000 INFO @ Sat, 03 Apr 2021 08:21:18: 64000000 INFO @ Sat, 03 Apr 2021 08:21:19: 58000000 INFO @ Sat, 03 Apr 2021 08:21:21: #1 tag size is determined as 76 bps INFO @ Sat, 03 Apr 2021 08:21:21: #1 tag size = 76 INFO @ Sat, 03 Apr 2021 08:21:21: #1 total tags in treatment: 25255202 INFO @ Sat, 03 Apr 2021 08:21:21: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 08:21:21: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 08:21:22: 54000000 INFO @ Sat, 03 Apr 2021 08:21:22: #1 tags after filtering in treatment: 16313974 INFO @ Sat, 03 Apr 2021 08:21:22: #1 Redundant rate of treatment: 0.35 INFO @ Sat, 03 Apr 2021 08:21:22: #1 finished! INFO @ Sat, 03 Apr 2021 08:21:22: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 08:21:22: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 08:21:23: #2 number of paired peaks: 1185 INFO @ Sat, 03 Apr 2021 08:21:23: start model_add_line... INFO @ Sat, 03 Apr 2021 08:21:23: start X-correlation... INFO @ Sat, 03 Apr 2021 08:21:23: end of X-cor INFO @ Sat, 03 Apr 2021 08:21:23: #2 finished! INFO @ Sat, 03 Apr 2021 08:21:23: #2 predicted fragment length is 103 bps INFO @ Sat, 03 Apr 2021 08:21:23: #2 alternative fragment length(s) may be 103 bps INFO @ Sat, 03 Apr 2021 08:21:23: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX3104592/SRX3104592.05_model.r WARNING @ Sat, 03 Apr 2021 08:21:23: #2 Since the d (103) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 08:21:23: #2 You may need to consider one of the other alternative d(s): 103 WARNING @ Sat, 03 Apr 2021 08:21:23: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 08:21:23: #3 Call peaks... INFO @ Sat, 03 Apr 2021 08:21:23: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 08:21:26: 59000000 INFO @ Sat, 03 Apr 2021 08:21:28: 55000000 INFO @ Sat, 03 Apr 2021 08:21:33: 60000000 INFO @ Sat, 03 Apr 2021 08:21:35: 56000000 INFO @ Sat, 03 Apr 2021 08:21:40: 61000000 INFO @ Sat, 03 Apr 2021 08:21:42: 57000000 INFO @ Sat, 03 Apr 2021 08:21:47: 62000000 INFO @ Sat, 03 Apr 2021 08:21:49: 58000000 INFO @ Sat, 03 Apr 2021 08:21:53: 63000000 INFO @ Sat, 03 Apr 2021 08:21:56: 59000000 INFO @ Sat, 03 Apr 2021 08:21:59: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 08:22:00: 64000000 INFO @ Sat, 03 Apr 2021 08:22:03: 60000000 INFO @ Sat, 03 Apr 2021 08:22:04: #1 tag size is determined as 76 bps INFO @ Sat, 03 Apr 2021 08:22:04: #1 tag size = 76 INFO @ Sat, 03 Apr 2021 08:22:04: #1 total tags in treatment: 25255202 INFO @ Sat, 03 Apr 2021 08:22:04: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 08:22:04: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 08:22:04: #1 tags after filtering in treatment: 16313974 INFO @ Sat, 03 Apr 2021 08:22:04: #1 Redundant rate of treatment: 0.35 INFO @ Sat, 03 Apr 2021 08:22:04: #1 finished! INFO @ Sat, 03 Apr 2021 08:22:04: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 08:22:04: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 08:22:05: #2 number of paired peaks: 1185 INFO @ Sat, 03 Apr 2021 08:22:05: start model_add_line... INFO @ Sat, 03 Apr 2021 08:22:05: start X-correlation... INFO @ Sat, 03 Apr 2021 08:22:05: end of X-cor INFO @ Sat, 03 Apr 2021 08:22:05: #2 finished! INFO @ Sat, 03 Apr 2021 08:22:05: #2 predicted fragment length is 103 bps INFO @ Sat, 03 Apr 2021 08:22:05: #2 alternative fragment length(s) may be 103 bps INFO @ Sat, 03 Apr 2021 08:22:05: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX3104592/SRX3104592.10_model.r WARNING @ Sat, 03 Apr 2021 08:22:05: #2 Since the d (103) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 08:22:05: #2 You may need to consider one of the other alternative d(s): 103 WARNING @ Sat, 03 Apr 2021 08:22:05: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 08:22:05: #3 Call peaks... INFO @ Sat, 03 Apr 2021 08:22:05: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 08:22:09: 61000000 INFO @ Sat, 03 Apr 2021 08:22:15: 62000000 INFO @ Sat, 03 Apr 2021 08:22:19: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX3104592/SRX3104592.05_peaks.xls INFO @ Sat, 03 Apr 2021 08:22:20: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX3104592/SRX3104592.05_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 08:22:20: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX3104592/SRX3104592.05_summits.bed INFO @ Sat, 03 Apr 2021 08:22:20: Done! pass1 - making usageList (15 chroms): 3 millis pass2 - checking and writing primary data (15154 records, 4 fields): 15 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 08:22:22: 63000000 INFO @ Sat, 03 Apr 2021 08:22:28: 64000000 INFO @ Sat, 03 Apr 2021 08:22:31: #1 tag size is determined as 76 bps INFO @ Sat, 03 Apr 2021 08:22:31: #1 tag size = 76 INFO @ Sat, 03 Apr 2021 08:22:31: #1 total tags in treatment: 25255202 INFO @ Sat, 03 Apr 2021 08:22:31: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 08:22:31: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 08:22:31: #1 tags after filtering in treatment: 16313974 INFO @ Sat, 03 Apr 2021 08:22:31: #1 Redundant rate of treatment: 0.35 INFO @ Sat, 03 Apr 2021 08:22:31: #1 finished! INFO @ Sat, 03 Apr 2021 08:22:31: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 08:22:31: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 08:22:33: #2 number of paired peaks: 1185 INFO @ Sat, 03 Apr 2021 08:22:33: start model_add_line... INFO @ Sat, 03 Apr 2021 08:22:33: start X-correlation... INFO @ Sat, 03 Apr 2021 08:22:33: end of X-cor INFO @ Sat, 03 Apr 2021 08:22:33: #2 finished! INFO @ Sat, 03 Apr 2021 08:22:33: #2 predicted fragment length is 103 bps INFO @ Sat, 03 Apr 2021 08:22:33: #2 alternative fragment length(s) may be 103 bps INFO @ Sat, 03 Apr 2021 08:22:33: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX3104592/SRX3104592.20_model.r WARNING @ Sat, 03 Apr 2021 08:22:33: #2 Since the d (103) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 08:22:33: #2 You may need to consider one of the other alternative d(s): 103 WARNING @ Sat, 03 Apr 2021 08:22:33: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 08:22:33: #3 Call peaks... INFO @ Sat, 03 Apr 2021 08:22:33: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 08:22:43: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 08:23:03: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX3104592/SRX3104592.10_peaks.xls INFO @ Sat, 03 Apr 2021 08:23:03: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX3104592/SRX3104592.10_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 08:23:03: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX3104592/SRX3104592.10_summits.bed INFO @ Sat, 03 Apr 2021 08:23:03: Done! pass1 - making usageList (15 chroms): 2 millis pass2 - checking and writing primary data (9756 records, 4 fields): 10 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 08:23:09: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 08:23:29: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX3104592/SRX3104592.20_peaks.xls INFO @ Sat, 03 Apr 2021 08:23:29: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX3104592/SRX3104592.20_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 08:23:29: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX3104592/SRX3104592.20_summits.bed INFO @ Sat, 03 Apr 2021 08:23:29: Done! pass1 - making usageList (14 chroms): 2 millis pass2 - checking and writing primary data (3900 records, 4 fields): 5 millis CompletedMACS2peakCalling