Job ID = 12265173 SRX = SRX3104590 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 36262439 spots for SRR5946195/SRR5946195.sra Written 36262439 spots for SRR5946195/SRR5946195.sra fastq に変換しました。 bowtie でマッピング中... Your job 12265631 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:44:59 36262439 reads; of these: 36262439 (100.00%) were paired; of these: 12268931 (33.83%) aligned concordantly 0 times 20819338 (57.41%) aligned concordantly exactly 1 time 3174170 (8.75%) aligned concordantly >1 times ---- 12268931 pairs aligned concordantly 0 times; of these: 4384344 (35.74%) aligned discordantly 1 time ---- 7884587 pairs aligned 0 times concordantly or discordantly; of these: 15769174 mates make up the pairs; of these: 13779211 (87.38%) aligned 0 times 886902 (5.62%) aligned exactly 1 time 1103061 (7.00%) aligned >1 times 81.00% overall alignment rate Time searching: 00:44:59 Overall time: 00:44:59 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 24 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 2777236 / 28144137 = 0.0987 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 07:45:19: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX3104590/SRX3104590.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX3104590/SRX3104590.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX3104590/SRX3104590.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX3104590/SRX3104590.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 07:45:19: #1 read tag files... INFO @ Sat, 03 Apr 2021 07:45:19: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 07:45:24: 1000000 INFO @ Sat, 03 Apr 2021 07:45:30: 2000000 INFO @ Sat, 03 Apr 2021 07:45:35: 3000000 INFO @ Sat, 03 Apr 2021 07:45:41: 4000000 INFO @ Sat, 03 Apr 2021 07:45:46: 5000000 WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 07:45:49: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX3104590/SRX3104590.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX3104590/SRX3104590.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX3104590/SRX3104590.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX3104590/SRX3104590.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 07:45:49: #1 read tag files... INFO @ Sat, 03 Apr 2021 07:45:49: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 07:45:52: 6000000 INFO @ Sat, 03 Apr 2021 07:45:54: 1000000 INFO @ Sat, 03 Apr 2021 07:45:57: 7000000 INFO @ Sat, 03 Apr 2021 07:46:00: 2000000 INFO @ Sat, 03 Apr 2021 07:46:03: 8000000 INFO @ Sat, 03 Apr 2021 07:46:06: 3000000 INFO @ Sat, 03 Apr 2021 07:46:09: 9000000 INFO @ Sat, 03 Apr 2021 07:46:11: 4000000 INFO @ Sat, 03 Apr 2021 07:46:15: 10000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 07:46:17: 5000000 INFO @ Sat, 03 Apr 2021 07:46:19: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX3104590/SRX3104590.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX3104590/SRX3104590.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX3104590/SRX3104590.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX3104590/SRX3104590.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 07:46:19: #1 read tag files... INFO @ Sat, 03 Apr 2021 07:46:19: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 07:46:21: 11000000 INFO @ Sat, 03 Apr 2021 07:46:23: 6000000 INFO @ Sat, 03 Apr 2021 07:46:25: 1000000 INFO @ Sat, 03 Apr 2021 07:46:27: 12000000 INFO @ Sat, 03 Apr 2021 07:46:29: 7000000 INFO @ Sat, 03 Apr 2021 07:46:31: 2000000 INFO @ Sat, 03 Apr 2021 07:46:33: 13000000 INFO @ Sat, 03 Apr 2021 07:46:35: 8000000 INFO @ Sat, 03 Apr 2021 07:46:38: 3000000 INFO @ Sat, 03 Apr 2021 07:46:39: 14000000 INFO @ Sat, 03 Apr 2021 07:46:41: 9000000 INFO @ Sat, 03 Apr 2021 07:46:44: 4000000 INFO @ Sat, 03 Apr 2021 07:46:45: 15000000 INFO @ Sat, 03 Apr 2021 07:46:47: 10000000 INFO @ Sat, 03 Apr 2021 07:46:51: 5000000 INFO @ Sat, 03 Apr 2021 07:46:51: 16000000 INFO @ Sat, 03 Apr 2021 07:46:53: 11000000 INFO @ Sat, 03 Apr 2021 07:46:57: 17000000 INFO @ Sat, 03 Apr 2021 07:46:57: 6000000 INFO @ Sat, 03 Apr 2021 07:46:59: 12000000 INFO @ Sat, 03 Apr 2021 07:47:03: 18000000 INFO @ Sat, 03 Apr 2021 07:47:04: 7000000 INFO @ Sat, 03 Apr 2021 07:47:05: 13000000 INFO @ Sat, 03 Apr 2021 07:47:09: 19000000 INFO @ Sat, 03 Apr 2021 07:47:11: 8000000 INFO @ Sat, 03 Apr 2021 07:47:11: 14000000 INFO @ Sat, 03 Apr 2021 07:47:15: 20000000 INFO @ Sat, 03 Apr 2021 07:47:17: 15000000 INFO @ Sat, 03 Apr 2021 07:47:17: 9000000 INFO @ Sat, 03 Apr 2021 07:47:21: 21000000 INFO @ Sat, 03 Apr 2021 07:47:23: 16000000 INFO @ Sat, 03 Apr 2021 07:47:24: 10000000 INFO @ Sat, 03 Apr 2021 07:47:27: 22000000 INFO @ Sat, 03 Apr 2021 07:47:29: 17000000 INFO @ Sat, 03 Apr 2021 07:47:30: 11000000 INFO @ Sat, 03 Apr 2021 07:47:33: 23000000 INFO @ Sat, 03 Apr 2021 07:47:35: 18000000 INFO @ Sat, 03 Apr 2021 07:47:37: 12000000 INFO @ Sat, 03 Apr 2021 07:47:39: 24000000 INFO @ Sat, 03 Apr 2021 07:47:41: 19000000 INFO @ Sat, 03 Apr 2021 07:47:44: 13000000 INFO @ Sat, 03 Apr 2021 07:47:45: 25000000 INFO @ Sat, 03 Apr 2021 07:47:47: 20000000 INFO @ Sat, 03 Apr 2021 07:47:50: 14000000 INFO @ Sat, 03 Apr 2021 07:47:51: 26000000 INFO @ Sat, 03 Apr 2021 07:47:53: 21000000 INFO @ Sat, 03 Apr 2021 07:47:57: 27000000 INFO @ Sat, 03 Apr 2021 07:47:57: 15000000 INFO @ Sat, 03 Apr 2021 07:47:59: 22000000 INFO @ Sat, 03 Apr 2021 07:48:03: 28000000 INFO @ Sat, 03 Apr 2021 07:48:04: 16000000 INFO @ Sat, 03 Apr 2021 07:48:05: 23000000 INFO @ Sat, 03 Apr 2021 07:48:09: 29000000 INFO @ Sat, 03 Apr 2021 07:48:11: 17000000 INFO @ Sat, 03 Apr 2021 07:48:11: 24000000 INFO @ Sat, 03 Apr 2021 07:48:15: 30000000 INFO @ Sat, 03 Apr 2021 07:48:17: 25000000 INFO @ Sat, 03 Apr 2021 07:48:18: 18000000 INFO @ Sat, 03 Apr 2021 07:48:20: 31000000 INFO @ Sat, 03 Apr 2021 07:48:23: 26000000 INFO @ Sat, 03 Apr 2021 07:48:25: 19000000 INFO @ Sat, 03 Apr 2021 07:48:26: 32000000 INFO @ Sat, 03 Apr 2021 07:48:29: 27000000 INFO @ Sat, 03 Apr 2021 07:48:31: 20000000 INFO @ Sat, 03 Apr 2021 07:48:32: 33000000 INFO @ Sat, 03 Apr 2021 07:48:35: 28000000 INFO @ Sat, 03 Apr 2021 07:48:38: 34000000 INFO @ Sat, 03 Apr 2021 07:48:38: 21000000 INFO @ Sat, 03 Apr 2021 07:48:40: 29000000 INFO @ Sat, 03 Apr 2021 07:48:44: 35000000 INFO @ Sat, 03 Apr 2021 07:48:45: 22000000 INFO @ Sat, 03 Apr 2021 07:48:46: 30000000 INFO @ Sat, 03 Apr 2021 07:48:50: 36000000 INFO @ Sat, 03 Apr 2021 07:48:52: 23000000 INFO @ Sat, 03 Apr 2021 07:48:52: 31000000 INFO @ Sat, 03 Apr 2021 07:48:56: 37000000 INFO @ Sat, 03 Apr 2021 07:48:58: 32000000 INFO @ Sat, 03 Apr 2021 07:48:58: 24000000 INFO @ Sat, 03 Apr 2021 07:49:01: 38000000 INFO @ Sat, 03 Apr 2021 07:49:03: 33000000 INFO @ Sat, 03 Apr 2021 07:49:05: 25000000 INFO @ Sat, 03 Apr 2021 07:49:07: 39000000 INFO @ Sat, 03 Apr 2021 07:49:09: 34000000 INFO @ Sat, 03 Apr 2021 07:49:11: 26000000 INFO @ Sat, 03 Apr 2021 07:49:13: 40000000 INFO @ Sat, 03 Apr 2021 07:49:15: 35000000 INFO @ Sat, 03 Apr 2021 07:49:18: 27000000 INFO @ Sat, 03 Apr 2021 07:49:18: 41000000 INFO @ Sat, 03 Apr 2021 07:49:20: 36000000 INFO @ Sat, 03 Apr 2021 07:49:24: 42000000 INFO @ Sat, 03 Apr 2021 07:49:24: 28000000 INFO @ Sat, 03 Apr 2021 07:49:26: 37000000 INFO @ Sat, 03 Apr 2021 07:49:30: 43000000 INFO @ Sat, 03 Apr 2021 07:49:31: 29000000 INFO @ Sat, 03 Apr 2021 07:49:32: 38000000 INFO @ Sat, 03 Apr 2021 07:49:36: 44000000 INFO @ Sat, 03 Apr 2021 07:49:37: 30000000 INFO @ Sat, 03 Apr 2021 07:49:38: 39000000 INFO @ Sat, 03 Apr 2021 07:49:41: 45000000 INFO @ Sat, 03 Apr 2021 07:49:43: 40000000 INFO @ Sat, 03 Apr 2021 07:49:44: 31000000 INFO @ Sat, 03 Apr 2021 07:49:47: 46000000 INFO @ Sat, 03 Apr 2021 07:49:49: 41000000 INFO @ Sat, 03 Apr 2021 07:49:50: 32000000 INFO @ Sat, 03 Apr 2021 07:49:53: 47000000 INFO @ Sat, 03 Apr 2021 07:49:55: 42000000 INFO @ Sat, 03 Apr 2021 07:49:57: 33000000 INFO @ Sat, 03 Apr 2021 07:49:58: 48000000 INFO @ Sat, 03 Apr 2021 07:50:00: 43000000 INFO @ Sat, 03 Apr 2021 07:50:03: 34000000 INFO @ Sat, 03 Apr 2021 07:50:04: 49000000 INFO @ Sat, 03 Apr 2021 07:50:06: 44000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Sat, 03 Apr 2021 07:50:10: 50000000 INFO @ Sat, 03 Apr 2021 07:50:10: 35000000 INFO @ Sat, 03 Apr 2021 07:50:12: 45000000 INFO @ Sat, 03 Apr 2021 07:50:15: 51000000 INFO @ Sat, 03 Apr 2021 07:50:16: 36000000 INFO @ Sat, 03 Apr 2021 07:50:18: 46000000 INFO @ Sat, 03 Apr 2021 07:50:21: 52000000 INFO @ Sat, 03 Apr 2021 07:50:23: 37000000 INFO @ Sat, 03 Apr 2021 07:50:24: 47000000 INFO @ Sat, 03 Apr 2021 07:50:27: 53000000 INFO @ Sat, 03 Apr 2021 07:50:28: #1 tag size is determined as 76 bps INFO @ Sat, 03 Apr 2021 07:50:28: #1 tag size = 76 INFO @ Sat, 03 Apr 2021 07:50:28: #1 total tags in treatment: 21665234 INFO @ Sat, 03 Apr 2021 07:50:28: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 07:50:28: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 07:50:28: #1 tags after filtering in treatment: 14487458 INFO @ Sat, 03 Apr 2021 07:50:28: #1 Redundant rate of treatment: 0.33 INFO @ Sat, 03 Apr 2021 07:50:28: #1 finished! INFO @ Sat, 03 Apr 2021 07:50:28: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 07:50:28: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 07:50:29: 38000000 INFO @ Sat, 03 Apr 2021 07:50:29: 48000000 INFO @ Sat, 03 Apr 2021 07:50:30: #2 number of paired peaks: 1659 INFO @ Sat, 03 Apr 2021 07:50:30: start model_add_line... INFO @ Sat, 03 Apr 2021 07:50:30: start X-correlation... INFO @ Sat, 03 Apr 2021 07:50:30: end of X-cor INFO @ Sat, 03 Apr 2021 07:50:30: #2 finished! INFO @ Sat, 03 Apr 2021 07:50:30: #2 predicted fragment length is 108 bps INFO @ Sat, 03 Apr 2021 07:50:30: #2 alternative fragment length(s) may be 108 bps INFO @ Sat, 03 Apr 2021 07:50:30: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX3104590/SRX3104590.05_model.r WARNING @ Sat, 03 Apr 2021 07:50:30: #2 Since the d (108) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 07:50:30: #2 You may need to consider one of the other alternative d(s): 108 WARNING @ Sat, 03 Apr 2021 07:50:30: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 07:50:30: #3 Call peaks... INFO @ Sat, 03 Apr 2021 07:50:30: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 07:50:35: 49000000 INFO @ Sat, 03 Apr 2021 07:50:36: 39000000 INFO @ Sat, 03 Apr 2021 07:50:41: 50000000 INFO @ Sat, 03 Apr 2021 07:50:42: 40000000 INFO @ Sat, 03 Apr 2021 07:50:46: 51000000 INFO @ Sat, 03 Apr 2021 07:50:49: 41000000 INFO @ Sat, 03 Apr 2021 07:50:52: 52000000 INFO @ Sat, 03 Apr 2021 07:50:55: 42000000 INFO @ Sat, 03 Apr 2021 07:50:58: 53000000 INFO @ Sat, 03 Apr 2021 07:50:59: #1 tag size is determined as 76 bps INFO @ Sat, 03 Apr 2021 07:50:59: #1 tag size = 76 INFO @ Sat, 03 Apr 2021 07:50:59: #1 total tags in treatment: 21665234 INFO @ Sat, 03 Apr 2021 07:50:59: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 07:50:59: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 07:51:00: #1 tags after filtering in treatment: 14487458 INFO @ Sat, 03 Apr 2021 07:51:00: #1 Redundant rate of treatment: 0.33 INFO @ Sat, 03 Apr 2021 07:51:00: #1 finished! INFO @ Sat, 03 Apr 2021 07:51:00: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 07:51:00: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 07:51:01: #2 number of paired peaks: 1659 INFO @ Sat, 03 Apr 2021 07:51:01: start model_add_line... INFO @ Sat, 03 Apr 2021 07:51:01: start X-correlation... INFO @ Sat, 03 Apr 2021 07:51:01: end of X-cor INFO @ Sat, 03 Apr 2021 07:51:01: #2 finished! INFO @ Sat, 03 Apr 2021 07:51:01: #2 predicted fragment length is 108 bps INFO @ Sat, 03 Apr 2021 07:51:01: #2 alternative fragment length(s) may be 108 bps INFO @ Sat, 03 Apr 2021 07:51:01: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX3104590/SRX3104590.10_model.r WARNING @ Sat, 03 Apr 2021 07:51:01: #2 Since the d (108) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 07:51:01: #2 You may need to consider one of the other alternative d(s): 108 WARNING @ Sat, 03 Apr 2021 07:51:01: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 07:51:01: #3 Call peaks... INFO @ Sat, 03 Apr 2021 07:51:01: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 07:51:02: 43000000 INFO @ Sat, 03 Apr 2021 07:51:03: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 07:51:08: 44000000 BigWig に変換しました。 INFO @ Sat, 03 Apr 2021 07:51:15: 45000000 INFO @ Sat, 03 Apr 2021 07:51:21: 46000000 INFO @ Sat, 03 Apr 2021 07:51:22: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX3104590/SRX3104590.05_peaks.xls INFO @ Sat, 03 Apr 2021 07:51:22: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX3104590/SRX3104590.05_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 07:51:22: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX3104590/SRX3104590.05_summits.bed INFO @ Sat, 03 Apr 2021 07:51:22: Done! pass1 - making usageList (15 chroms): 2 millis pass2 - checking and writing primary data (14783 records, 4 fields): 16 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 07:51:27: 47000000 INFO @ Sat, 03 Apr 2021 07:51:34: 48000000 INFO @ Sat, 03 Apr 2021 07:51:35: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 07:51:40: 49000000 INFO @ Sat, 03 Apr 2021 07:51:46: 50000000 INFO @ Sat, 03 Apr 2021 07:51:52: 51000000 INFO @ Sat, 03 Apr 2021 07:51:52: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX3104590/SRX3104590.10_peaks.xls INFO @ Sat, 03 Apr 2021 07:51:52: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX3104590/SRX3104590.10_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 07:51:52: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX3104590/SRX3104590.10_summits.bed INFO @ Sat, 03 Apr 2021 07:51:52: Done! pass1 - making usageList (15 chroms): 1 millis pass2 - checking and writing primary data (9458 records, 4 fields): 11 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 07:51:58: 52000000 INFO @ Sat, 03 Apr 2021 07:52:04: 53000000 INFO @ Sat, 03 Apr 2021 07:52:06: #1 tag size is determined as 76 bps INFO @ Sat, 03 Apr 2021 07:52:06: #1 tag size = 76 INFO @ Sat, 03 Apr 2021 07:52:06: #1 total tags in treatment: 21665234 INFO @ Sat, 03 Apr 2021 07:52:06: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 07:52:06: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 07:52:06: #1 tags after filtering in treatment: 14487458 INFO @ Sat, 03 Apr 2021 07:52:06: #1 Redundant rate of treatment: 0.33 INFO @ Sat, 03 Apr 2021 07:52:06: #1 finished! INFO @ Sat, 03 Apr 2021 07:52:06: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 07:52:06: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 07:52:07: #2 number of paired peaks: 1659 INFO @ Sat, 03 Apr 2021 07:52:07: start model_add_line... INFO @ Sat, 03 Apr 2021 07:52:07: start X-correlation... INFO @ Sat, 03 Apr 2021 07:52:07: end of X-cor INFO @ Sat, 03 Apr 2021 07:52:07: #2 finished! INFO @ Sat, 03 Apr 2021 07:52:07: #2 predicted fragment length is 108 bps INFO @ Sat, 03 Apr 2021 07:52:07: #2 alternative fragment length(s) may be 108 bps INFO @ Sat, 03 Apr 2021 07:52:07: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX3104590/SRX3104590.20_model.r WARNING @ Sat, 03 Apr 2021 07:52:07: #2 Since the d (108) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 07:52:07: #2 You may need to consider one of the other alternative d(s): 108 WARNING @ Sat, 03 Apr 2021 07:52:07: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 07:52:07: #3 Call peaks... INFO @ Sat, 03 Apr 2021 07:52:07: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 07:52:41: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 07:52:59: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX3104590/SRX3104590.20_peaks.xls INFO @ Sat, 03 Apr 2021 07:52:59: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX3104590/SRX3104590.20_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 07:52:59: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX3104590/SRX3104590.20_summits.bed INFO @ Sat, 03 Apr 2021 07:52:59: Done! pass1 - making usageList (14 chroms): 1 millis pass2 - checking and writing primary data (4036 records, 4 fields): 6 millis CompletedMACS2peakCalling