Job ID = 12265171 SRX = SRX3104588 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 39248886 spots for SRR5946193/SRR5946193.sra Written 39248886 spots for SRR5946193/SRR5946193.sra fastq に変換しました。 bowtie でマッピング中... Your job 12265661 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:01 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:58:20 39248886 reads; of these: 39248886 (100.00%) were paired; of these: 12404238 (31.60%) aligned concordantly 0 times 23845782 (60.76%) aligned concordantly exactly 1 time 2998866 (7.64%) aligned concordantly >1 times ---- 12404238 pairs aligned concordantly 0 times; of these: 4996060 (40.28%) aligned discordantly 1 time ---- 7408178 pairs aligned 0 times concordantly or discordantly; of these: 14816356 mates make up the pairs; of these: 12966865 (87.52%) aligned 0 times 884307 (5.97%) aligned exactly 1 time 965184 (6.51%) aligned >1 times 83.48% overall alignment rate Time searching: 00:58:21 Overall time: 00:58:21 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 28 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 3752016 / 31654154 = 0.1185 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 08:03:53: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX3104588/SRX3104588.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX3104588/SRX3104588.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX3104588/SRX3104588.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX3104588/SRX3104588.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 08:03:53: #1 read tag files... INFO @ Sat, 03 Apr 2021 08:03:53: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 08:04:01: 1000000 INFO @ Sat, 03 Apr 2021 08:04:10: 2000000 INFO @ Sat, 03 Apr 2021 08:04:18: 3000000 WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 08:04:23: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX3104588/SRX3104588.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX3104588/SRX3104588.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX3104588/SRX3104588.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX3104588/SRX3104588.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 08:04:23: #1 read tag files... INFO @ Sat, 03 Apr 2021 08:04:23: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 08:04:27: 4000000 INFO @ Sat, 03 Apr 2021 08:04:35: 1000000 INFO @ Sat, 03 Apr 2021 08:04:35: 5000000 INFO @ Sat, 03 Apr 2021 08:04:44: 6000000 INFO @ Sat, 03 Apr 2021 08:04:46: 2000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 08:04:52: 7000000 INFO @ Sat, 03 Apr 2021 08:04:53: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX3104588/SRX3104588.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX3104588/SRX3104588.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX3104588/SRX3104588.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX3104588/SRX3104588.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 08:04:53: #1 read tag files... INFO @ Sat, 03 Apr 2021 08:04:53: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 08:04:58: 3000000 INFO @ Sat, 03 Apr 2021 08:05:01: 8000000 INFO @ Sat, 03 Apr 2021 08:05:05: 1000000 INFO @ Sat, 03 Apr 2021 08:05:10: 9000000 INFO @ Sat, 03 Apr 2021 08:05:11: 4000000 INFO @ Sat, 03 Apr 2021 08:05:17: 2000000 INFO @ Sat, 03 Apr 2021 08:05:19: 10000000 INFO @ Sat, 03 Apr 2021 08:05:22: 5000000 INFO @ Sat, 03 Apr 2021 08:05:27: 11000000 INFO @ Sat, 03 Apr 2021 08:05:29: 3000000 INFO @ Sat, 03 Apr 2021 08:05:35: 6000000 INFO @ Sat, 03 Apr 2021 08:05:36: 12000000 INFO @ Sat, 03 Apr 2021 08:05:41: 4000000 INFO @ Sat, 03 Apr 2021 08:05:45: 13000000 INFO @ Sat, 03 Apr 2021 08:05:47: 7000000 INFO @ Sat, 03 Apr 2021 08:05:52: 5000000 INFO @ Sat, 03 Apr 2021 08:05:54: 14000000 INFO @ Sat, 03 Apr 2021 08:06:00: 8000000 INFO @ Sat, 03 Apr 2021 08:06:03: 15000000 INFO @ Sat, 03 Apr 2021 08:06:03: 6000000 INFO @ Sat, 03 Apr 2021 08:06:11: 16000000 INFO @ Sat, 03 Apr 2021 08:06:12: 9000000 INFO @ Sat, 03 Apr 2021 08:06:14: 7000000 INFO @ Sat, 03 Apr 2021 08:06:20: 17000000 INFO @ Sat, 03 Apr 2021 08:06:25: 10000000 INFO @ Sat, 03 Apr 2021 08:06:26: 8000000 INFO @ Sat, 03 Apr 2021 08:06:29: 18000000 INFO @ Sat, 03 Apr 2021 08:06:37: 9000000 INFO @ Sat, 03 Apr 2021 08:06:37: 11000000 INFO @ Sat, 03 Apr 2021 08:06:37: 19000000 INFO @ Sat, 03 Apr 2021 08:06:46: 20000000 INFO @ Sat, 03 Apr 2021 08:06:49: 10000000 INFO @ Sat, 03 Apr 2021 08:06:49: 12000000 INFO @ Sat, 03 Apr 2021 08:06:55: 21000000 INFO @ Sat, 03 Apr 2021 08:07:00: 13000000 INFO @ Sat, 03 Apr 2021 08:07:01: 11000000 INFO @ Sat, 03 Apr 2021 08:07:04: 22000000 INFO @ Sat, 03 Apr 2021 08:07:11: 14000000 INFO @ Sat, 03 Apr 2021 08:07:12: 12000000 INFO @ Sat, 03 Apr 2021 08:07:13: 23000000 INFO @ Sat, 03 Apr 2021 08:07:22: 24000000 INFO @ Sat, 03 Apr 2021 08:07:22: 15000000 INFO @ Sat, 03 Apr 2021 08:07:24: 13000000 INFO @ Sat, 03 Apr 2021 08:07:31: 25000000 INFO @ Sat, 03 Apr 2021 08:07:33: 16000000 INFO @ Sat, 03 Apr 2021 08:07:35: 14000000 INFO @ Sat, 03 Apr 2021 08:07:40: 26000000 INFO @ Sat, 03 Apr 2021 08:07:45: 17000000 INFO @ Sat, 03 Apr 2021 08:07:46: 15000000 INFO @ Sat, 03 Apr 2021 08:07:48: 27000000 INFO @ Sat, 03 Apr 2021 08:07:56: 18000000 INFO @ Sat, 03 Apr 2021 08:07:56: 28000000 INFO @ Sat, 03 Apr 2021 08:07:57: 16000000 INFO @ Sat, 03 Apr 2021 08:08:05: 29000000 INFO @ Sat, 03 Apr 2021 08:08:06: 19000000 INFO @ Sat, 03 Apr 2021 08:08:08: 17000000 INFO @ Sat, 03 Apr 2021 08:08:14: 30000000 INFO @ Sat, 03 Apr 2021 08:08:17: 20000000 INFO @ Sat, 03 Apr 2021 08:08:19: 18000000 INFO @ Sat, 03 Apr 2021 08:08:22: 31000000 INFO @ Sat, 03 Apr 2021 08:08:28: 21000000 INFO @ Sat, 03 Apr 2021 08:08:29: 19000000 INFO @ Sat, 03 Apr 2021 08:08:31: 32000000 INFO @ Sat, 03 Apr 2021 08:08:38: 22000000 INFO @ Sat, 03 Apr 2021 08:08:39: 33000000 INFO @ Sat, 03 Apr 2021 08:08:40: 20000000 INFO @ Sat, 03 Apr 2021 08:08:47: 34000000 INFO @ Sat, 03 Apr 2021 08:08:49: 23000000 INFO @ Sat, 03 Apr 2021 08:08:51: 21000000 INFO @ Sat, 03 Apr 2021 08:08:55: 35000000 INFO @ Sat, 03 Apr 2021 08:09:00: 24000000 INFO @ Sat, 03 Apr 2021 08:09:01: 22000000 INFO @ Sat, 03 Apr 2021 08:09:03: 36000000 INFO @ Sat, 03 Apr 2021 08:09:11: 25000000 INFO @ Sat, 03 Apr 2021 08:09:12: 37000000 INFO @ Sat, 03 Apr 2021 08:09:12: 23000000 INFO @ Sat, 03 Apr 2021 08:09:21: 38000000 INFO @ Sat, 03 Apr 2021 08:09:22: 26000000 INFO @ Sat, 03 Apr 2021 08:09:23: 24000000 INFO @ Sat, 03 Apr 2021 08:09:31: 39000000 INFO @ Sat, 03 Apr 2021 08:09:33: 27000000 INFO @ Sat, 03 Apr 2021 08:09:34: 25000000 INFO @ Sat, 03 Apr 2021 08:09:39: 40000000 INFO @ Sat, 03 Apr 2021 08:09:44: 28000000 INFO @ Sat, 03 Apr 2021 08:09:44: 26000000 INFO @ Sat, 03 Apr 2021 08:09:47: 41000000 INFO @ Sat, 03 Apr 2021 08:09:55: 42000000 INFO @ Sat, 03 Apr 2021 08:09:56: 29000000 INFO @ Sat, 03 Apr 2021 08:09:56: 27000000 INFO @ Sat, 03 Apr 2021 08:10:03: 43000000 INFO @ Sat, 03 Apr 2021 08:10:07: 30000000 INFO @ Sat, 03 Apr 2021 08:10:07: 28000000 INFO @ Sat, 03 Apr 2021 08:10:12: 44000000 INFO @ Sat, 03 Apr 2021 08:10:18: 31000000 INFO @ Sat, 03 Apr 2021 08:10:18: 29000000 INFO @ Sat, 03 Apr 2021 08:10:20: 45000000 INFO @ Sat, 03 Apr 2021 08:10:28: 46000000 INFO @ Sat, 03 Apr 2021 08:10:29: 32000000 INFO @ Sat, 03 Apr 2021 08:10:29: 30000000 INFO @ Sat, 03 Apr 2021 08:10:36: 47000000 INFO @ Sat, 03 Apr 2021 08:10:41: 31000000 INFO @ Sat, 03 Apr 2021 08:10:41: 33000000 INFO @ Sat, 03 Apr 2021 08:10:44: 48000000 INFO @ Sat, 03 Apr 2021 08:10:52: 49000000 INFO @ Sat, 03 Apr 2021 08:10:52: 32000000 INFO @ Sat, 03 Apr 2021 08:10:53: 34000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Sat, 03 Apr 2021 08:11:00: 50000000 INFO @ Sat, 03 Apr 2021 08:11:04: 33000000 INFO @ Sat, 03 Apr 2021 08:11:05: 35000000 INFO @ Sat, 03 Apr 2021 08:11:08: 51000000 INFO @ Sat, 03 Apr 2021 08:11:16: 52000000 INFO @ Sat, 03 Apr 2021 08:11:17: 34000000 INFO @ Sat, 03 Apr 2021 08:11:17: 36000000 INFO @ Sat, 03 Apr 2021 08:11:24: 53000000 INFO @ Sat, 03 Apr 2021 08:11:28: 37000000 INFO @ Sat, 03 Apr 2021 08:11:28: 35000000 INFO @ Sat, 03 Apr 2021 08:11:31: 54000000 INFO @ Sat, 03 Apr 2021 08:11:37: 38000000 INFO @ Sat, 03 Apr 2021 08:11:39: 55000000 INFO @ Sat, 03 Apr 2021 08:11:39: 36000000 INFO @ Sat, 03 Apr 2021 08:11:46: 56000000 INFO @ Sat, 03 Apr 2021 08:11:46: 39000000 INFO @ Sat, 03 Apr 2021 08:11:49: 37000000 INFO @ Sat, 03 Apr 2021 08:11:53: 57000000 INFO @ Sat, 03 Apr 2021 08:11:57: 40000000 INFO @ Sat, 03 Apr 2021 08:11:59: 38000000 INFO @ Sat, 03 Apr 2021 08:12:00: 58000000 INFO @ Sat, 03 Apr 2021 08:12:01: #1 tag size is determined as 76 bps INFO @ Sat, 03 Apr 2021 08:12:01: #1 tag size = 76 INFO @ Sat, 03 Apr 2021 08:12:01: #1 total tags in treatment: 23529542 INFO @ Sat, 03 Apr 2021 08:12:01: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 08:12:01: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 08:12:02: #1 tags after filtering in treatment: 14553086 INFO @ Sat, 03 Apr 2021 08:12:02: #1 Redundant rate of treatment: 0.38 INFO @ Sat, 03 Apr 2021 08:12:02: #1 finished! INFO @ Sat, 03 Apr 2021 08:12:02: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 08:12:02: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 08:12:03: #2 number of paired peaks: 2426 INFO @ Sat, 03 Apr 2021 08:12:03: start model_add_line... INFO @ Sat, 03 Apr 2021 08:12:03: start X-correlation... INFO @ Sat, 03 Apr 2021 08:12:03: end of X-cor INFO @ Sat, 03 Apr 2021 08:12:03: #2 finished! INFO @ Sat, 03 Apr 2021 08:12:03: #2 predicted fragment length is 122 bps INFO @ Sat, 03 Apr 2021 08:12:03: #2 alternative fragment length(s) may be 122 bps INFO @ Sat, 03 Apr 2021 08:12:03: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX3104588/SRX3104588.05_model.r WARNING @ Sat, 03 Apr 2021 08:12:03: #2 Since the d (122) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 08:12:03: #2 You may need to consider one of the other alternative d(s): 122 WARNING @ Sat, 03 Apr 2021 08:12:03: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 08:12:03: #3 Call peaks... INFO @ Sat, 03 Apr 2021 08:12:03: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 08:12:08: 41000000 INFO @ Sat, 03 Apr 2021 08:12:08: 39000000 INFO @ Sat, 03 Apr 2021 08:12:19: 42000000 INFO @ Sat, 03 Apr 2021 08:12:20: 40000000 BigWig に変換しました。 INFO @ Sat, 03 Apr 2021 08:12:30: 41000000 INFO @ Sat, 03 Apr 2021 08:12:32: 43000000 INFO @ Sat, 03 Apr 2021 08:12:41: 42000000 INFO @ Sat, 03 Apr 2021 08:12:44: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 08:12:46: 44000000 INFO @ Sat, 03 Apr 2021 08:12:54: 43000000 INFO @ Sat, 03 Apr 2021 08:12:58: 45000000 INFO @ Sat, 03 Apr 2021 08:13:06: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX3104588/SRX3104588.05_peaks.xls INFO @ Sat, 03 Apr 2021 08:13:06: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX3104588/SRX3104588.05_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 08:13:06: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX3104588/SRX3104588.05_summits.bed INFO @ Sat, 03 Apr 2021 08:13:06: Done! pass1 - making usageList (15 chroms): 6 millis pass2 - checking and writing primary data (13520 records, 4 fields): 22 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 08:13:08: 44000000 INFO @ Sat, 03 Apr 2021 08:13:10: 46000000 INFO @ Sat, 03 Apr 2021 08:13:20: 45000000 INFO @ Sat, 03 Apr 2021 08:13:22: 47000000 INFO @ Sat, 03 Apr 2021 08:13:33: 46000000 INFO @ Sat, 03 Apr 2021 08:13:35: 48000000 INFO @ Sat, 03 Apr 2021 08:13:45: 47000000 INFO @ Sat, 03 Apr 2021 08:13:47: 49000000 INFO @ Sat, 03 Apr 2021 08:13:58: 48000000 INFO @ Sat, 03 Apr 2021 08:14:00: 50000000 INFO @ Sat, 03 Apr 2021 08:14:10: 49000000 INFO @ Sat, 03 Apr 2021 08:14:12: 51000000 INFO @ Sat, 03 Apr 2021 08:14:22: 50000000 INFO @ Sat, 03 Apr 2021 08:14:24: 52000000 INFO @ Sat, 03 Apr 2021 08:14:35: 51000000 INFO @ Sat, 03 Apr 2021 08:14:36: 53000000 INFO @ Sat, 03 Apr 2021 08:14:46: 52000000 INFO @ Sat, 03 Apr 2021 08:14:48: 54000000 INFO @ Sat, 03 Apr 2021 08:14:58: 53000000 INFO @ Sat, 03 Apr 2021 08:15:00: 55000000 INFO @ Sat, 03 Apr 2021 08:15:10: 54000000 INFO @ Sat, 03 Apr 2021 08:15:12: 56000000 INFO @ Sat, 03 Apr 2021 08:15:22: 55000000 INFO @ Sat, 03 Apr 2021 08:15:24: 57000000 INFO @ Sat, 03 Apr 2021 08:15:34: 56000000 INFO @ Sat, 03 Apr 2021 08:15:35: 58000000 INFO @ Sat, 03 Apr 2021 08:15:36: #1 tag size is determined as 76 bps INFO @ Sat, 03 Apr 2021 08:15:36: #1 tag size = 76 INFO @ Sat, 03 Apr 2021 08:15:36: #1 total tags in treatment: 23529542 INFO @ Sat, 03 Apr 2021 08:15:36: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 08:15:36: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 08:15:37: #1 tags after filtering in treatment: 14553086 INFO @ Sat, 03 Apr 2021 08:15:37: #1 Redundant rate of treatment: 0.38 INFO @ Sat, 03 Apr 2021 08:15:37: #1 finished! INFO @ Sat, 03 Apr 2021 08:15:37: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 08:15:37: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 08:15:38: #2 number of paired peaks: 2426 INFO @ Sat, 03 Apr 2021 08:15:38: start model_add_line... INFO @ Sat, 03 Apr 2021 08:15:38: start X-correlation... INFO @ Sat, 03 Apr 2021 08:15:38: end of X-cor INFO @ Sat, 03 Apr 2021 08:15:38: #2 finished! INFO @ Sat, 03 Apr 2021 08:15:38: #2 predicted fragment length is 122 bps INFO @ Sat, 03 Apr 2021 08:15:38: #2 alternative fragment length(s) may be 122 bps INFO @ Sat, 03 Apr 2021 08:15:38: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX3104588/SRX3104588.10_model.r WARNING @ Sat, 03 Apr 2021 08:15:38: #2 Since the d (122) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 08:15:38: #2 You may need to consider one of the other alternative d(s): 122 WARNING @ Sat, 03 Apr 2021 08:15:38: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 08:15:38: #3 Call peaks... INFO @ Sat, 03 Apr 2021 08:15:38: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 08:15:44: 57000000 INFO @ Sat, 03 Apr 2021 08:15:54: 58000000 INFO @ Sat, 03 Apr 2021 08:15:55: #1 tag size is determined as 76 bps INFO @ Sat, 03 Apr 2021 08:15:55: #1 tag size = 76 INFO @ Sat, 03 Apr 2021 08:15:55: #1 total tags in treatment: 23529542 INFO @ Sat, 03 Apr 2021 08:15:55: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 08:15:55: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 08:15:55: #1 tags after filtering in treatment: 14553086 INFO @ Sat, 03 Apr 2021 08:15:55: #1 Redundant rate of treatment: 0.38 INFO @ Sat, 03 Apr 2021 08:15:55: #1 finished! INFO @ Sat, 03 Apr 2021 08:15:55: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 08:15:55: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 08:15:57: #2 number of paired peaks: 2426 INFO @ Sat, 03 Apr 2021 08:15:57: start model_add_line... INFO @ Sat, 03 Apr 2021 08:15:57: start X-correlation... INFO @ Sat, 03 Apr 2021 08:15:57: end of X-cor INFO @ Sat, 03 Apr 2021 08:15:57: #2 finished! INFO @ Sat, 03 Apr 2021 08:15:57: #2 predicted fragment length is 122 bps INFO @ Sat, 03 Apr 2021 08:15:57: #2 alternative fragment length(s) may be 122 bps INFO @ Sat, 03 Apr 2021 08:15:57: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX3104588/SRX3104588.20_model.r WARNING @ Sat, 03 Apr 2021 08:15:57: #2 Since the d (122) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 08:15:57: #2 You may need to consider one of the other alternative d(s): 122 WARNING @ Sat, 03 Apr 2021 08:15:57: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 08:15:57: #3 Call peaks... INFO @ Sat, 03 Apr 2021 08:15:57: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 08:16:20: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 08:16:38: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 08:16:43: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX3104588/SRX3104588.10_peaks.xls INFO @ Sat, 03 Apr 2021 08:16:43: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX3104588/SRX3104588.10_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 08:16:43: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX3104588/SRX3104588.10_summits.bed INFO @ Sat, 03 Apr 2021 08:16:43: Done! pass1 - making usageList (15 chroms): 5 millis pass2 - checking and writing primary data (8996 records, 4 fields): 13 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 08:17:00: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX3104588/SRX3104588.20_peaks.xls INFO @ Sat, 03 Apr 2021 08:17:01: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX3104588/SRX3104588.20_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 08:17:01: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX3104588/SRX3104588.20_summits.bed INFO @ Sat, 03 Apr 2021 08:17:01: Done! pass1 - making usageList (14 chroms): 3 millis pass2 - checking and writing primary data (4136 records, 4 fields): 12 millis CompletedMACS2peakCalling