Job ID = 12264996 SRX = SRX3088440 Genome = dm3 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... Read 5584 spots for SRR5928118/SRR5928118.sra Written 5584 spots for SRR5928118/SRR5928118.sra fastq に変換しました。 bowtie でマッピング中... Your job 12265151 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:01 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:00:00 5584 reads; of these: 5584 (100.00%) were unpaired; of these: 4059 (72.69%) aligned 0 times 1179 (21.11%) aligned exactly 1 time 346 (6.20%) aligned >1 times 27.31% overall alignment rate Time searching: 00:00:01 Overall time: 00:00:01 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_rmdupse_core] 533 / 1525 = 0.3495 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 06:04:00: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX3088440/SRX3088440.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX3088440/SRX3088440.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX3088440/SRX3088440.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX3088440/SRX3088440.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 06:04:00: #1 read tag files... INFO @ Sat, 03 Apr 2021 06:04:00: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 06:04:00: #1 tag size is determined as 73 bps INFO @ Sat, 03 Apr 2021 06:04:00: #1 tag size = 73 INFO @ Sat, 03 Apr 2021 06:04:00: #1 total tags in treatment: 992 INFO @ Sat, 03 Apr 2021 06:04:00: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 06:04:00: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 06:04:00: #1 tags after filtering in treatment: 991 INFO @ Sat, 03 Apr 2021 06:04:00: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 03 Apr 2021 06:04:00: #1 finished! INFO @ Sat, 03 Apr 2021 06:04:00: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 06:04:00: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 06:04:00: #2 number of paired peaks: 0 WARNING @ Sat, 03 Apr 2021 06:04:00: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sat, 03 Apr 2021 06:04:00: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/dm3/SRX3088440/SRX3088440.05_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/dm3/SRX3088440/SRX3088440.05_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/dm3/SRX3088440/SRX3088440.05_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/dm3/SRX3088440/SRX3088440.05_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 06:04:31: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX3088440/SRX3088440.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX3088440/SRX3088440.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX3088440/SRX3088440.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX3088440/SRX3088440.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 06:04:31: #1 read tag files... INFO @ Sat, 03 Apr 2021 06:04:31: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 06:04:31: #1 tag size is determined as 73 bps INFO @ Sat, 03 Apr 2021 06:04:31: #1 tag size = 73 INFO @ Sat, 03 Apr 2021 06:04:31: #1 total tags in treatment: 992 INFO @ Sat, 03 Apr 2021 06:04:31: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 06:04:31: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 06:04:31: #1 tags after filtering in treatment: 991 INFO @ Sat, 03 Apr 2021 06:04:31: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 03 Apr 2021 06:04:31: #1 finished! INFO @ Sat, 03 Apr 2021 06:04:31: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 06:04:31: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 06:04:31: #2 number of paired peaks: 0 WARNING @ Sat, 03 Apr 2021 06:04:31: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sat, 03 Apr 2021 06:04:31: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/dm3/SRX3088440/SRX3088440.10_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/dm3/SRX3088440/SRX3088440.10_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/dm3/SRX3088440/SRX3088440.10_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/dm3/SRX3088440/SRX3088440.10_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。 INFO @ Sat, 03 Apr 2021 06:05:01: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX3088440/SRX3088440.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX3088440/SRX3088440.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX3088440/SRX3088440.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX3088440/SRX3088440.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 06:05:01: #1 read tag files... INFO @ Sat, 03 Apr 2021 06:05:01: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 06:05:01: #1 tag size is determined as 73 bps INFO @ Sat, 03 Apr 2021 06:05:01: #1 tag size = 73 INFO @ Sat, 03 Apr 2021 06:05:01: #1 total tags in treatment: 992 INFO @ Sat, 03 Apr 2021 06:05:01: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 06:05:01: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 06:05:01: #1 tags after filtering in treatment: 991 INFO @ Sat, 03 Apr 2021 06:05:01: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 03 Apr 2021 06:05:01: #1 finished! INFO @ Sat, 03 Apr 2021 06:05:01: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 06:05:01: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 06:05:01: #2 number of paired peaks: 0 WARNING @ Sat, 03 Apr 2021 06:05:01: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sat, 03 Apr 2021 06:05:01: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/dm3/SRX3088440/SRX3088440.20_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 2 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/dm3/SRX3088440/SRX3088440.20_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/dm3/SRX3088440/SRX3088440.20_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/dm3/SRX3088440/SRX3088440.20_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling