Job ID = 10202003 sra ファイルのダウンロード中... Completed: 2876884K bytes transferred in 225 seconds (104655K bits/sec), in 1 file. sra ファイルのダウンロードが完了しました。 Read layout: PAIRED fastq に変換中... Written 32856524 spots for /home/okishinya/chipatlas/results/dm3/SRX2965247/SRR5765705.sra Written 32856524 spots total rm: cannot remove `[DSE]RX*': No such file or directory rm: cannot remove `[DSE]RR*.fastq': No such file or directory fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 03:32:03 32856524 reads; of these: 32856524 (100.00%) were paired; of these: 11445656 (34.84%) aligned concordantly 0 times 15981148 (48.64%) aligned concordantly exactly 1 time 5429720 (16.53%) aligned concordantly >1 times ---- 11445656 pairs aligned concordantly 0 times; of these: 4583619 (40.05%) aligned discordantly 1 time ---- 6862037 pairs aligned 0 times concordantly or discordantly; of these: 13724074 mates make up the pairs; of these: 10344051 (75.37%) aligned 0 times 715056 (5.21%) aligned exactly 1 time 2664967 (19.42%) aligned >1 times 84.26% overall alignment rate Time searching: 03:32:03 Overall time: 03:32:03 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 40 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 963912 / 25694204 = 0.0375 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Mon, 13 Nov 2017 17:24:33: # Command line: callpeak -t SRX2965247.bam -f BAM -g dm -n SRX2965247.10 -q 1e-10 # ARGUMENTS LIST: # name = SRX2965247.10 # format = BAM # ChIP-seq file = ['SRX2965247.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Mon, 13 Nov 2017 17:24:33: # Command line: callpeak -t SRX2965247.bam -f BAM -g dm -n SRX2965247.05 -q 1e-05 # ARGUMENTS LIST: # name = SRX2965247.05 # format = BAM # ChIP-seq file = ['SRX2965247.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Mon, 13 Nov 2017 17:24:33: #1 read tag files... INFO @ Mon, 13 Nov 2017 17:24:33: # Command line: callpeak -t SRX2965247.bam -f BAM -g dm -n SRX2965247.20 -q 1e-20 # ARGUMENTS LIST: # name = SRX2965247.20 # format = BAM # ChIP-seq file = ['SRX2965247.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Mon, 13 Nov 2017 17:24:33: #1 read treatment tags... INFO @ Mon, 13 Nov 2017 17:24:33: #1 read tag files... INFO @ Mon, 13 Nov 2017 17:24:33: #1 read tag files... INFO @ Mon, 13 Nov 2017 17:24:33: #1 read treatment tags... INFO @ Mon, 13 Nov 2017 17:24:33: #1 read treatment tags... INFO @ Mon, 13 Nov 2017 17:24:51: 1000000 INFO @ Mon, 13 Nov 2017 17:24:53: 1000000 INFO @ Mon, 13 Nov 2017 17:24:59: 1000000 INFO @ Mon, 13 Nov 2017 17:25:14: 2000000 INFO @ Mon, 13 Nov 2017 17:25:16: 2000000 INFO @ Mon, 13 Nov 2017 17:25:24: 2000000 INFO @ Mon, 13 Nov 2017 17:25:37: 3000000 INFO @ Mon, 13 Nov 2017 17:25:38: 3000000 INFO @ Mon, 13 Nov 2017 17:25:48: 3000000 INFO @ Mon, 13 Nov 2017 17:25:58: 4000000 INFO @ Mon, 13 Nov 2017 17:25:59: 4000000 INFO @ Mon, 13 Nov 2017 17:26:11: 4000000 INFO @ Mon, 13 Nov 2017 17:26:17: 5000000 INFO @ Mon, 13 Nov 2017 17:26:17: 5000000 INFO @ Mon, 13 Nov 2017 17:26:34: 6000000 INFO @ Mon, 13 Nov 2017 17:26:34: 6000000 INFO @ Mon, 13 Nov 2017 17:26:36: 5000000 INFO @ Mon, 13 Nov 2017 17:26:54: 7000000 INFO @ Mon, 13 Nov 2017 17:26:54: 7000000 INFO @ Mon, 13 Nov 2017 17:26:58: 6000000 INFO @ Mon, 13 Nov 2017 17:27:19: 8000000 INFO @ Mon, 13 Nov 2017 17:27:20: 8000000 INFO @ Mon, 13 Nov 2017 17:27:21: 7000000 INFO @ Mon, 13 Nov 2017 17:27:41: 9000000 INFO @ Mon, 13 Nov 2017 17:27:42: 9000000 INFO @ Mon, 13 Nov 2017 17:27:45: 8000000 INFO @ Mon, 13 Nov 2017 17:27:53: 10000000 INFO @ Mon, 13 Nov 2017 17:28:05: 11000000 INFO @ Mon, 13 Nov 2017 17:28:05: 10000000 INFO @ Mon, 13 Nov 2017 17:28:08: 9000000 INFO @ Mon, 13 Nov 2017 17:28:18: 12000000 INFO @ Mon, 13 Nov 2017 17:28:29: 11000000 INFO @ Mon, 13 Nov 2017 17:28:30: 13000000 INFO @ Mon, 13 Nov 2017 17:28:31: 10000000 INFO @ Mon, 13 Nov 2017 17:28:43: 14000000 INFO @ Mon, 13 Nov 2017 17:28:55: 12000000 INFO @ Mon, 13 Nov 2017 17:28:56: 15000000 INFO @ Mon, 13 Nov 2017 17:29:00: 11000000 INFO @ Mon, 13 Nov 2017 17:29:09: 16000000 INFO @ Mon, 13 Nov 2017 17:29:18: 13000000 INFO @ Mon, 13 Nov 2017 17:29:24: 17000000 INFO @ Mon, 13 Nov 2017 17:29:30: 12000000 INFO @ Mon, 13 Nov 2017 17:29:41: 18000000 INFO @ Mon, 13 Nov 2017 17:29:45: 14000000 INFO @ Mon, 13 Nov 2017 17:29:54: 19000000 INFO @ Mon, 13 Nov 2017 17:29:58: 13000000 INFO @ Mon, 13 Nov 2017 17:30:08: 20000000 INFO @ Mon, 13 Nov 2017 17:30:17: 15000000 INFO @ Mon, 13 Nov 2017 17:30:23: 21000000 INFO @ Mon, 13 Nov 2017 17:30:27: 14000000 INFO @ Mon, 13 Nov 2017 17:30:41: 16000000 INFO @ Mon, 13 Nov 2017 17:30:42: 22000000 INFO @ Mon, 13 Nov 2017 17:30:57: 15000000 INFO @ Mon, 13 Nov 2017 17:31:04: 17000000 INFO @ Mon, 13 Nov 2017 17:31:07: 23000000 INFO @ Mon, 13 Nov 2017 17:31:21: 16000000 INFO @ Mon, 13 Nov 2017 17:31:28: 18000000 INFO @ Mon, 13 Nov 2017 17:31:35: 24000000 INFO @ Mon, 13 Nov 2017 17:31:44: 17000000 INFO @ Mon, 13 Nov 2017 17:31:51: 19000000 INFO @ Mon, 13 Nov 2017 17:32:01: 25000000 INFO @ Mon, 13 Nov 2017 17:32:08: 18000000 INFO @ Mon, 13 Nov 2017 17:32:08: 20000000 INFO @ Mon, 13 Nov 2017 17:32:24: 21000000 INFO @ Mon, 13 Nov 2017 17:32:25: 26000000 INFO @ Mon, 13 Nov 2017 17:32:32: 19000000 INFO @ Mon, 13 Nov 2017 17:32:39: 22000000 INFO @ Mon, 13 Nov 2017 17:32:41: 27000000 INFO @ Mon, 13 Nov 2017 17:32:54: 28000000 INFO @ Mon, 13 Nov 2017 17:32:58: 20000000 INFO @ Mon, 13 Nov 2017 17:33:06: 29000000 INFO @ Mon, 13 Nov 2017 17:33:08: 23000000 INFO @ Mon, 13 Nov 2017 17:33:18: 30000000 INFO @ Mon, 13 Nov 2017 17:33:25: 24000000 INFO @ Mon, 13 Nov 2017 17:33:25: 21000000 INFO @ Mon, 13 Nov 2017 17:33:30: 31000000 INFO @ Mon, 13 Nov 2017 17:33:44: 25000000 INFO @ Mon, 13 Nov 2017 17:33:48: 32000000 INFO @ Mon, 13 Nov 2017 17:33:51: 22000000 INFO @ Mon, 13 Nov 2017 17:34:00: 33000000 INFO @ Mon, 13 Nov 2017 17:34:07: 26000000 INFO @ Mon, 13 Nov 2017 17:34:12: 34000000 INFO @ Mon, 13 Nov 2017 17:34:16: 23000000 INFO @ Mon, 13 Nov 2017 17:34:24: 35000000 INFO @ Mon, 13 Nov 2017 17:34:28: 27000000 INFO @ Mon, 13 Nov 2017 17:34:36: 36000000 INFO @ Mon, 13 Nov 2017 17:34:42: 24000000 INFO @ Mon, 13 Nov 2017 17:34:47: 28000000 INFO @ Mon, 13 Nov 2017 17:34:48: 37000000 INFO @ Mon, 13 Nov 2017 17:35:00: 38000000 INFO @ Mon, 13 Nov 2017 17:35:06: 29000000 INFO @ Mon, 13 Nov 2017 17:35:07: 25000000 INFO @ Mon, 13 Nov 2017 17:35:13: 39000000 INFO @ Mon, 13 Nov 2017 17:35:27: 40000000 INFO @ Mon, 13 Nov 2017 17:35:31: 26000000 INFO @ Mon, 13 Nov 2017 17:35:34: 30000000 INFO @ Mon, 13 Nov 2017 17:35:42: 41000000 INFO @ Mon, 13 Nov 2017 17:35:57: 27000000 INFO @ Mon, 13 Nov 2017 17:36:00: 31000000 INFO @ Mon, 13 Nov 2017 17:36:03: 42000000 INFO @ Mon, 13 Nov 2017 17:36:23: 28000000 INFO @ Mon, 13 Nov 2017 17:36:23: 43000000 INFO @ Mon, 13 Nov 2017 17:36:32: 32000000 INFO @ Mon, 13 Nov 2017 17:36:41: 44000000 INFO @ Mon, 13 Nov 2017 17:36:48: 29000000 INFO @ Mon, 13 Nov 2017 17:36:55: 45000000 INFO @ Mon, 13 Nov 2017 17:37:02: 33000000 INFO @ Mon, 13 Nov 2017 17:37:06: 46000000 INFO @ Mon, 13 Nov 2017 17:37:14: 30000000 INFO @ Mon, 13 Nov 2017 17:37:17: 47000000 INFO @ Mon, 13 Nov 2017 17:37:20: 34000000 INFO @ Mon, 13 Nov 2017 17:37:28: 48000000 INFO @ Mon, 13 Nov 2017 17:37:38: 31000000 INFO @ Mon, 13 Nov 2017 17:37:38: 35000000 INFO @ Mon, 13 Nov 2017 17:37:39: 49000000 INFO @ Mon, 13 Nov 2017 17:37:50: 50000000 INFO @ Mon, 13 Nov 2017 17:37:59: 32000000 INFO @ Mon, 13 Nov 2017 17:38:00: 51000000 INFO @ Mon, 13 Nov 2017 17:38:01: 36000000 INFO @ Mon, 13 Nov 2017 17:38:21: 52000000 INFO @ Mon, 13 Nov 2017 17:38:21: 33000000 INFO @ Mon, 13 Nov 2017 17:38:26: 37000000 INFO @ Mon, 13 Nov 2017 17:38:39: 34000000 INFO @ Mon, 13 Nov 2017 17:38:42: 53000000 INFO @ Mon, 13 Nov 2017 17:38:49: 38000000 INFO @ Mon, 13 Nov 2017 17:38:52: #1 tag size is determined as 126 bps INFO @ Mon, 13 Nov 2017 17:38:52: #1 tag size = 126 INFO @ Mon, 13 Nov 2017 17:38:52: #1 total tags in treatment: 20506974 INFO @ Mon, 13 Nov 2017 17:38:52: #1 user defined the maximum tags... INFO @ Mon, 13 Nov 2017 17:38:52: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Mon, 13 Nov 2017 17:38:53: #1 tags after filtering in treatment: 18691347 INFO @ Mon, 13 Nov 2017 17:38:53: #1 Redundant rate of treatment: 0.09 INFO @ Mon, 13 Nov 2017 17:38:53: #1 finished! INFO @ Mon, 13 Nov 2017 17:38:53: #2 Build Peak Model... INFO @ Mon, 13 Nov 2017 17:38:53: #2 looking for paired plus/minus strand peaks... INFO @ Mon, 13 Nov 2017 17:38:55: #2 number of paired peaks: 740 WARNING @ Mon, 13 Nov 2017 17:38:55: Fewer paired peaks (740) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 740 pairs to build model! INFO @ Mon, 13 Nov 2017 17:38:55: start model_add_line... INFO @ Mon, 13 Nov 2017 17:38:55: start X-correlation... INFO @ Mon, 13 Nov 2017 17:38:55: end of X-cor INFO @ Mon, 13 Nov 2017 17:38:55: #2 finished! INFO @ Mon, 13 Nov 2017 17:38:55: #2 predicted fragment length is 167 bps INFO @ Mon, 13 Nov 2017 17:38:55: #2 alternative fragment length(s) may be 167 bps INFO @ Mon, 13 Nov 2017 17:38:55: #2.2 Generate R script for model : SRX2965247.20_model.r WARNING @ Mon, 13 Nov 2017 17:38:55: #2 Since the d (167) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Mon, 13 Nov 2017 17:38:55: #2 You may need to consider one of the other alternative d(s): 167 WARNING @ Mon, 13 Nov 2017 17:38:55: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Mon, 13 Nov 2017 17:38:55: #3 Call peaks... INFO @ Mon, 13 Nov 2017 17:38:55: #3 Pre-compute pvalue-qvalue table... INFO @ Mon, 13 Nov 2017 17:38:58: 35000000 INFO @ Mon, 13 Nov 2017 17:39:04: 39000000 INFO @ Mon, 13 Nov 2017 17:39:19: 40000000 INFO @ Mon, 13 Nov 2017 17:39:20: 36000000 INFO @ Mon, 13 Nov 2017 17:39:33: 41000000 INFO @ Mon, 13 Nov 2017 17:39:46: 42000000 INFO @ Mon, 13 Nov 2017 17:39:47: 37000000 INFO @ Mon, 13 Nov 2017 17:39:53: #3 Call peaks for each chromosome... INFO @ Mon, 13 Nov 2017 17:40:00: 43000000 INFO @ Mon, 13 Nov 2017 17:40:10: 38000000 INFO @ Mon, 13 Nov 2017 17:40:15: 44000000 INFO @ Mon, 13 Nov 2017 17:40:26: #4 Write output xls file... SRX2965247.20_peaks.xls INFO @ Mon, 13 Nov 2017 17:40:26: #4 Write peak in narrowPeak format file... SRX2965247.20_peaks.narrowPeak INFO @ Mon, 13 Nov 2017 17:40:26: #4 Write summits bed file... SRX2965247.20_summits.bed INFO @ Mon, 13 Nov 2017 17:40:26: Done! pass1 - making usageList (15 chroms): 2 millis pass2 - checking and writing primary data (1061 records, 4 fields): 5 millis CompletedMACS2peakCalling INFO @ Mon, 13 Nov 2017 17:40:28: 39000000 INFO @ Mon, 13 Nov 2017 17:40:29: 45000000 INFO @ Mon, 13 Nov 2017 17:40:43: 40000000 INFO @ Mon, 13 Nov 2017 17:40:43: 46000000 INFO @ Mon, 13 Nov 2017 17:40:56: 41000000 INFO @ Mon, 13 Nov 2017 17:41:05: 47000000 INFO @ Mon, 13 Nov 2017 17:41:08: 42000000 INFO @ Mon, 13 Nov 2017 17:41:21: 43000000 INFO @ Mon, 13 Nov 2017 17:41:25: 48000000 INFO @ Mon, 13 Nov 2017 17:41:35: 44000000 INFO @ Mon, 13 Nov 2017 17:41:40: 49000000 INFO @ Mon, 13 Nov 2017 17:41:51: 50000000 INFO @ Mon, 13 Nov 2017 17:41:51: 45000000 INFO @ Mon, 13 Nov 2017 17:42:03: 51000000 INFO @ Mon, 13 Nov 2017 17:42:14: 46000000 INFO @ Mon, 13 Nov 2017 17:42:29: 52000000 INFO @ Mon, 13 Nov 2017 17:42:36: 47000000 INFO @ Mon, 13 Nov 2017 17:42:53: 48000000 INFO @ Mon, 13 Nov 2017 17:42:55: 53000000 INFO @ Mon, 13 Nov 2017 17:43:02: #1 tag size is determined as 126 bps INFO @ Mon, 13 Nov 2017 17:43:02: #1 tag size = 126 INFO @ Mon, 13 Nov 2017 17:43:02: #1 total tags in treatment: 20506974 INFO @ Mon, 13 Nov 2017 17:43:02: #1 user defined the maximum tags... INFO @ Mon, 13 Nov 2017 17:43:02: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Mon, 13 Nov 2017 17:43:03: #1 tags after filtering in treatment: 18691347 INFO @ Mon, 13 Nov 2017 17:43:03: #1 Redundant rate of treatment: 0.09 INFO @ Mon, 13 Nov 2017 17:43:03: #1 finished! INFO @ Mon, 13 Nov 2017 17:43:03: #2 Build Peak Model... INFO @ Mon, 13 Nov 2017 17:43:03: #2 looking for paired plus/minus strand peaks... INFO @ Mon, 13 Nov 2017 17:43:04: #2 number of paired peaks: 740 WARNING @ Mon, 13 Nov 2017 17:43:04: Fewer paired peaks (740) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 740 pairs to build model! INFO @ Mon, 13 Nov 2017 17:43:04: start model_add_line... INFO @ Mon, 13 Nov 2017 17:43:05: start X-correlation... INFO @ Mon, 13 Nov 2017 17:43:05: end of X-cor INFO @ Mon, 13 Nov 2017 17:43:05: #2 finished! INFO @ Mon, 13 Nov 2017 17:43:05: #2 predicted fragment length is 167 bps INFO @ Mon, 13 Nov 2017 17:43:05: #2 alternative fragment length(s) may be 167 bps INFO @ Mon, 13 Nov 2017 17:43:05: #2.2 Generate R script for model : SRX2965247.10_model.r WARNING @ Mon, 13 Nov 2017 17:43:05: #2 Since the d (167) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Mon, 13 Nov 2017 17:43:05: #2 You may need to consider one of the other alternative d(s): 167 WARNING @ Mon, 13 Nov 2017 17:43:05: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Mon, 13 Nov 2017 17:43:05: #3 Call peaks... INFO @ Mon, 13 Nov 2017 17:43:05: #3 Pre-compute pvalue-qvalue table... INFO @ Mon, 13 Nov 2017 17:43:09: 49000000 INFO @ Mon, 13 Nov 2017 17:43:26: 50000000 INFO @ Mon, 13 Nov 2017 17:43:38: 51000000 INFO @ Mon, 13 Nov 2017 17:43:55: 52000000 INFO @ Mon, 13 Nov 2017 17:44:07: #3 Call peaks for each chromosome... INFO @ Mon, 13 Nov 2017 17:44:13: 53000000 INFO @ Mon, 13 Nov 2017 17:44:21: #1 tag size is determined as 126 bps INFO @ Mon, 13 Nov 2017 17:44:21: #1 tag size = 126 INFO @ Mon, 13 Nov 2017 17:44:21: #1 total tags in treatment: 20506974 INFO @ Mon, 13 Nov 2017 17:44:21: #1 user defined the maximum tags... INFO @ Mon, 13 Nov 2017 17:44:21: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Mon, 13 Nov 2017 17:44:22: #1 tags after filtering in treatment: 18691347 INFO @ Mon, 13 Nov 2017 17:44:22: #1 Redundant rate of treatment: 0.09 INFO @ Mon, 13 Nov 2017 17:44:22: #1 finished! INFO @ Mon, 13 Nov 2017 17:44:22: #2 Build Peak Model... INFO @ Mon, 13 Nov 2017 17:44:22: #2 looking for paired plus/minus strand peaks... INFO @ Mon, 13 Nov 2017 17:44:23: #2 number of paired peaks: 740 WARNING @ Mon, 13 Nov 2017 17:44:23: Fewer paired peaks (740) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 740 pairs to build model! INFO @ Mon, 13 Nov 2017 17:44:23: start model_add_line... INFO @ Mon, 13 Nov 2017 17:44:24: start X-correlation... INFO @ Mon, 13 Nov 2017 17:44:24: end of X-cor INFO @ Mon, 13 Nov 2017 17:44:24: #2 finished! INFO @ Mon, 13 Nov 2017 17:44:24: #2 predicted fragment length is 167 bps INFO @ Mon, 13 Nov 2017 17:44:24: #2 alternative fragment length(s) may be 167 bps INFO @ Mon, 13 Nov 2017 17:44:24: #2.2 Generate R script for model : SRX2965247.05_model.r WARNING @ Mon, 13 Nov 2017 17:44:24: #2 Since the d (167) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Mon, 13 Nov 2017 17:44:24: #2 You may need to consider one of the other alternative d(s): 167 WARNING @ Mon, 13 Nov 2017 17:44:24: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Mon, 13 Nov 2017 17:44:24: #3 Call peaks... INFO @ Mon, 13 Nov 2017 17:44:24: #3 Pre-compute pvalue-qvalue table... INFO @ Mon, 13 Nov 2017 17:44:39: #4 Write output xls file... SRX2965247.10_peaks.xls INFO @ Mon, 13 Nov 2017 17:44:39: #4 Write peak in narrowPeak format file... SRX2965247.10_peaks.narrowPeak INFO @ Mon, 13 Nov 2017 17:44:39: #4 Write summits bed file... SRX2965247.10_summits.bed INFO @ Mon, 13 Nov 2017 17:44:39: Done! pass1 - making usageList (15 chroms): 2 millis pass2 - checking and writing primary data (1784 records, 4 fields): 6 millis CompletedMACS2peakCalling INFO @ Mon, 13 Nov 2017 17:45:29: #3 Call peaks for each chromosome... INFO @ Mon, 13 Nov 2017 17:46:05: #4 Write output xls file... SRX2965247.05_peaks.xls INFO @ Mon, 13 Nov 2017 17:46:05: #4 Write peak in narrowPeak format file... SRX2965247.05_peaks.narrowPeak INFO @ Mon, 13 Nov 2017 17:46:05: #4 Write summits bed file... SRX2965247.05_summits.bed INFO @ Mon, 13 Nov 2017 17:46:05: Done! pass1 - making usageList (15 chroms): 3 millis pass2 - checking and writing primary data (2625 records, 4 fields): 7 millis CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。