Job ID = 10201997 sra ファイルのダウンロード中... Completed: 3291314K bytes transferred in 245 seconds (109684K bits/sec), in 1 file. sra ファイルのダウンロードが完了しました。 Read layout: PAIRED fastq に変換中... Written 38387317 spots for /home/okishinya/chipatlas/results/dm3/SRX2965241/SRR5765699.sra Written 38387317 spots total rm: cannot remove `[DSE]RX*': そのようなファイルやディレクトリはありません rm: cannot remove `[DSE]RR*.fastq': そのようなファイルやディレクトリはありません fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 02:01:05 38387317 reads; of these: 38387317 (100.00%) were paired; of these: 15294055 (39.84%) aligned concordantly 0 times 17737793 (46.21%) aligned concordantly exactly 1 time 5355469 (13.95%) aligned concordantly >1 times ---- 15294055 pairs aligned concordantly 0 times; of these: 5847114 (38.23%) aligned discordantly 1 time ---- 9446941 pairs aligned 0 times concordantly or discordantly; of these: 18893882 mates make up the pairs; of these: 15082855 (79.83%) aligned 0 times 804991 (4.26%) aligned exactly 1 time 3006036 (15.91%) aligned >1 times 80.35% overall alignment rate Time searching: 02:01:05 Overall time: 02:01:05 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 44 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 854110 / 28574352 = 0.0299 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Mon, 13 Nov 2017 15:44:25: # Command line: callpeak -t SRX2965241.bam -f BAM -g dm -n SRX2965241.20 -q 1e-20 # ARGUMENTS LIST: # name = SRX2965241.20 # format = BAM # ChIP-seq file = ['SRX2965241.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Mon, 13 Nov 2017 15:44:25: # Command line: callpeak -t SRX2965241.bam -f BAM -g dm -n SRX2965241.10 -q 1e-10 # ARGUMENTS LIST: # name = SRX2965241.10 # format = BAM # ChIP-seq file = ['SRX2965241.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Mon, 13 Nov 2017 15:44:25: # Command line: callpeak -t SRX2965241.bam -f BAM -g dm -n SRX2965241.05 -q 1e-05 # ARGUMENTS LIST: # name = SRX2965241.05 # format = BAM # ChIP-seq file = ['SRX2965241.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Mon, 13 Nov 2017 15:44:25: #1 read tag files... INFO @ Mon, 13 Nov 2017 15:44:25: #1 read tag files... INFO @ Mon, 13 Nov 2017 15:44:25: #1 read tag files... INFO @ Mon, 13 Nov 2017 15:44:25: #1 read treatment tags... INFO @ Mon, 13 Nov 2017 15:44:25: #1 read treatment tags... INFO @ Mon, 13 Nov 2017 15:44:25: #1 read treatment tags... INFO @ Mon, 13 Nov 2017 15:44:32: 1000000 INFO @ Mon, 13 Nov 2017 15:44:32: 1000000 INFO @ Mon, 13 Nov 2017 15:44:32: 1000000 INFO @ Mon, 13 Nov 2017 15:44:39: 2000000 INFO @ Mon, 13 Nov 2017 15:44:40: 2000000 INFO @ Mon, 13 Nov 2017 15:44:40: 2000000 INFO @ Mon, 13 Nov 2017 15:44:47: 3000000 INFO @ Mon, 13 Nov 2017 15:44:48: 3000000 INFO @ Mon, 13 Nov 2017 15:44:48: 3000000 INFO @ Mon, 13 Nov 2017 15:44:55: 4000000 INFO @ Mon, 13 Nov 2017 15:44:55: 4000000 INFO @ Mon, 13 Nov 2017 15:44:55: 4000000 INFO @ Mon, 13 Nov 2017 15:45:03: 5000000 INFO @ Mon, 13 Nov 2017 15:45:03: 5000000 INFO @ Mon, 13 Nov 2017 15:45:03: 5000000 INFO @ Mon, 13 Nov 2017 15:45:11: 6000000 INFO @ Mon, 13 Nov 2017 15:45:12: 6000000 INFO @ Mon, 13 Nov 2017 15:45:12: 6000000 INFO @ Mon, 13 Nov 2017 15:45:20: 7000000 INFO @ Mon, 13 Nov 2017 15:45:20: 7000000 INFO @ Mon, 13 Nov 2017 15:45:21: 7000000 INFO @ Mon, 13 Nov 2017 15:45:29: 8000000 INFO @ Mon, 13 Nov 2017 15:45:29: 8000000 INFO @ Mon, 13 Nov 2017 15:45:31: 8000000 INFO @ Mon, 13 Nov 2017 15:45:38: 9000000 INFO @ Mon, 13 Nov 2017 15:45:38: 9000000 INFO @ Mon, 13 Nov 2017 15:45:41: 9000000 INFO @ Mon, 13 Nov 2017 15:45:46: 10000000 INFO @ Mon, 13 Nov 2017 15:45:47: 10000000 INFO @ Mon, 13 Nov 2017 15:45:51: 10000000 INFO @ Mon, 13 Nov 2017 15:45:56: 11000000 INFO @ Mon, 13 Nov 2017 15:45:56: 11000000 INFO @ Mon, 13 Nov 2017 15:46:02: 11000000 INFO @ Mon, 13 Nov 2017 15:46:05: 12000000 INFO @ Mon, 13 Nov 2017 15:46:06: 12000000 INFO @ Mon, 13 Nov 2017 15:46:12: 12000000 INFO @ Mon, 13 Nov 2017 15:46:14: 13000000 INFO @ Mon, 13 Nov 2017 15:46:15: 13000000 INFO @ Mon, 13 Nov 2017 15:46:22: 13000000 INFO @ Mon, 13 Nov 2017 15:46:23: 14000000 INFO @ Mon, 13 Nov 2017 15:46:24: 14000000 INFO @ Mon, 13 Nov 2017 15:46:32: 15000000 INFO @ Mon, 13 Nov 2017 15:46:33: 14000000 INFO @ Mon, 13 Nov 2017 15:46:34: 15000000 INFO @ Mon, 13 Nov 2017 15:46:42: 16000000 INFO @ Mon, 13 Nov 2017 15:46:43: 15000000 INFO @ Mon, 13 Nov 2017 15:46:43: 16000000 INFO @ Mon, 13 Nov 2017 15:46:51: 17000000 INFO @ Mon, 13 Nov 2017 15:46:53: 17000000 INFO @ Mon, 13 Nov 2017 15:46:54: 16000000 INFO @ Mon, 13 Nov 2017 15:47:00: 18000000 INFO @ Mon, 13 Nov 2017 15:47:01: 18000000 INFO @ Mon, 13 Nov 2017 15:47:03: 17000000 INFO @ Mon, 13 Nov 2017 15:47:09: 19000000 INFO @ Mon, 13 Nov 2017 15:47:11: 19000000 INFO @ Mon, 13 Nov 2017 15:47:13: 18000000 INFO @ Mon, 13 Nov 2017 15:47:18: 20000000 INFO @ Mon, 13 Nov 2017 15:47:20: 20000000 INFO @ Mon, 13 Nov 2017 15:47:23: 19000000 INFO @ Mon, 13 Nov 2017 15:47:26: 21000000 INFO @ Mon, 13 Nov 2017 15:47:28: 21000000 INFO @ Mon, 13 Nov 2017 15:47:32: 20000000 INFO @ Mon, 13 Nov 2017 15:47:35: 22000000 INFO @ Mon, 13 Nov 2017 15:47:35: 22000000 INFO @ Mon, 13 Nov 2017 15:47:41: 21000000 INFO @ Mon, 13 Nov 2017 15:47:43: 23000000 INFO @ Mon, 13 Nov 2017 15:47:43: 23000000 INFO @ Mon, 13 Nov 2017 15:47:49: 22000000 INFO @ Mon, 13 Nov 2017 15:47:51: 24000000 INFO @ Mon, 13 Nov 2017 15:47:51: 24000000 INFO @ Mon, 13 Nov 2017 15:47:58: 23000000 INFO @ Mon, 13 Nov 2017 15:47:58: 25000000 INFO @ Mon, 13 Nov 2017 15:48:00: 25000000 INFO @ Mon, 13 Nov 2017 15:48:06: 26000000 INFO @ Mon, 13 Nov 2017 15:48:07: 24000000 INFO @ Mon, 13 Nov 2017 15:48:08: 26000000 INFO @ Mon, 13 Nov 2017 15:48:13: 27000000 INFO @ Mon, 13 Nov 2017 15:48:15: 25000000 INFO @ Mon, 13 Nov 2017 15:48:16: 27000000 INFO @ Mon, 13 Nov 2017 15:48:21: 28000000 INFO @ Mon, 13 Nov 2017 15:48:24: 26000000 INFO @ Mon, 13 Nov 2017 15:48:25: 28000000 INFO @ Mon, 13 Nov 2017 15:48:29: 29000000 INFO @ Mon, 13 Nov 2017 15:48:33: 29000000 INFO @ Mon, 13 Nov 2017 15:48:33: 27000000 INFO @ Mon, 13 Nov 2017 15:48:36: 30000000 INFO @ Mon, 13 Nov 2017 15:48:41: 30000000 INFO @ Mon, 13 Nov 2017 15:48:42: 28000000 INFO @ Mon, 13 Nov 2017 15:48:44: 31000000 INFO @ Mon, 13 Nov 2017 15:48:49: 31000000 INFO @ Mon, 13 Nov 2017 15:48:51: 29000000 INFO @ Mon, 13 Nov 2017 15:48:51: 32000000 INFO @ Mon, 13 Nov 2017 15:48:57: 32000000 INFO @ Mon, 13 Nov 2017 15:48:59: 33000000 INFO @ Mon, 13 Nov 2017 15:48:59: 30000000 INFO @ Mon, 13 Nov 2017 15:49:05: 33000000 INFO @ Mon, 13 Nov 2017 15:49:07: 34000000 INFO @ Mon, 13 Nov 2017 15:49:08: 31000000 INFO @ Mon, 13 Nov 2017 15:49:13: 34000000 INFO @ Mon, 13 Nov 2017 15:49:14: 35000000 INFO @ Mon, 13 Nov 2017 15:49:16: 32000000 INFO @ Mon, 13 Nov 2017 15:49:21: 35000000 INFO @ Mon, 13 Nov 2017 15:49:22: 36000000 INFO @ Mon, 13 Nov 2017 15:49:24: 33000000 INFO @ Mon, 13 Nov 2017 15:49:29: 36000000 INFO @ Mon, 13 Nov 2017 15:49:29: 37000000 INFO @ Mon, 13 Nov 2017 15:49:33: 34000000 INFO @ Mon, 13 Nov 2017 15:49:37: 37000000 INFO @ Mon, 13 Nov 2017 15:49:37: 38000000 INFO @ Mon, 13 Nov 2017 15:49:41: 35000000 INFO @ Mon, 13 Nov 2017 15:49:44: 38000000 INFO @ Mon, 13 Nov 2017 15:49:45: 39000000 INFO @ Mon, 13 Nov 2017 15:49:49: 36000000 INFO @ Mon, 13 Nov 2017 15:49:52: 40000000 INFO @ Mon, 13 Nov 2017 15:49:53: 39000000 INFO @ Mon, 13 Nov 2017 15:49:57: 37000000 INFO @ Mon, 13 Nov 2017 15:50:00: 41000000 INFO @ Mon, 13 Nov 2017 15:50:01: 40000000 INFO @ Mon, 13 Nov 2017 15:50:05: 38000000 INFO @ Mon, 13 Nov 2017 15:50:08: 42000000 INFO @ Mon, 13 Nov 2017 15:50:09: 41000000 INFO @ Mon, 13 Nov 2017 15:50:14: 39000000 INFO @ Mon, 13 Nov 2017 15:50:15: 43000000 INFO @ Mon, 13 Nov 2017 15:50:16: 42000000 INFO @ Mon, 13 Nov 2017 15:50:22: 40000000 INFO @ Mon, 13 Nov 2017 15:50:23: 44000000 INFO @ Mon, 13 Nov 2017 15:50:24: 43000000 INFO @ Mon, 13 Nov 2017 15:50:30: 41000000 INFO @ Mon, 13 Nov 2017 15:50:31: 45000000 INFO @ Mon, 13 Nov 2017 15:50:32: 44000000 INFO @ Mon, 13 Nov 2017 15:50:38: 42000000 INFO @ Mon, 13 Nov 2017 15:50:39: 46000000 INFO @ Mon, 13 Nov 2017 15:50:40: 45000000 INFO @ Mon, 13 Nov 2017 15:50:46: 47000000 INFO @ Mon, 13 Nov 2017 15:50:47: 43000000 INFO @ Mon, 13 Nov 2017 15:50:48: 46000000 INFO @ Mon, 13 Nov 2017 15:50:54: 48000000 INFO @ Mon, 13 Nov 2017 15:50:55: 44000000 INFO @ Mon, 13 Nov 2017 15:50:55: 47000000 INFO @ Mon, 13 Nov 2017 15:51:02: 49000000 INFO @ Mon, 13 Nov 2017 15:51:03: 48000000 INFO @ Mon, 13 Nov 2017 15:51:03: 45000000 INFO @ Mon, 13 Nov 2017 15:51:11: 49000000 INFO @ Mon, 13 Nov 2017 15:51:11: 50000000 INFO @ Mon, 13 Nov 2017 15:51:11: 46000000 INFO @ Mon, 13 Nov 2017 15:51:18: 50000000 INFO @ Mon, 13 Nov 2017 15:51:19: 47000000 INFO @ Mon, 13 Nov 2017 15:51:19: 51000000 INFO @ Mon, 13 Nov 2017 15:51:26: 51000000 INFO @ Mon, 13 Nov 2017 15:51:27: 48000000 INFO @ Mon, 13 Nov 2017 15:51:28: 52000000 INFO @ Mon, 13 Nov 2017 15:51:33: 52000000 INFO @ Mon, 13 Nov 2017 15:51:35: 49000000 INFO @ Mon, 13 Nov 2017 15:51:37: 53000000 INFO @ Mon, 13 Nov 2017 15:51:41: 53000000 INFO @ Mon, 13 Nov 2017 15:51:43: 50000000 INFO @ Mon, 13 Nov 2017 15:51:45: 54000000 INFO @ Mon, 13 Nov 2017 15:51:49: 54000000 INFO @ Mon, 13 Nov 2017 15:51:51: 51000000 INFO @ Mon, 13 Nov 2017 15:51:53: 55000000 INFO @ Mon, 13 Nov 2017 15:51:57: 55000000 INFO @ Mon, 13 Nov 2017 15:52:00: 52000000 INFO @ Mon, 13 Nov 2017 15:52:01: 56000000 INFO @ Mon, 13 Nov 2017 15:52:05: 56000000 INFO @ Mon, 13 Nov 2017 15:52:09: 53000000 INFO @ Mon, 13 Nov 2017 15:52:09: 57000000 INFO @ Mon, 13 Nov 2017 15:52:13: 57000000 INFO @ Mon, 13 Nov 2017 15:52:17: 58000000 INFO @ Mon, 13 Nov 2017 15:52:17: 54000000 INFO @ Mon, 13 Nov 2017 15:52:22: 58000000 INFO @ Mon, 13 Nov 2017 15:52:24: 59000000 INFO @ Mon, 13 Nov 2017 15:52:26: 55000000 INFO @ Mon, 13 Nov 2017 15:52:30: 59000000 INFO @ Mon, 13 Nov 2017 15:52:32: #1 tag size is determined as 126 bps INFO @ Mon, 13 Nov 2017 15:52:32: #1 tag size = 126 INFO @ Mon, 13 Nov 2017 15:52:32: #1 total tags in treatment: 22318387 INFO @ Mon, 13 Nov 2017 15:52:32: #1 user defined the maximum tags... INFO @ Mon, 13 Nov 2017 15:52:32: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Mon, 13 Nov 2017 15:52:32: #1 tags after filtering in treatment: 20121155 INFO @ Mon, 13 Nov 2017 15:52:32: #1 Redundant rate of treatment: 0.10 INFO @ Mon, 13 Nov 2017 15:52:32: #1 finished! INFO @ Mon, 13 Nov 2017 15:52:32: #2 Build Peak Model... INFO @ Mon, 13 Nov 2017 15:52:32: #2 looking for paired plus/minus strand peaks... INFO @ Mon, 13 Nov 2017 15:52:34: #2 number of paired peaks: 714 WARNING @ Mon, 13 Nov 2017 15:52:34: Fewer paired peaks (714) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 714 pairs to build model! INFO @ Mon, 13 Nov 2017 15:52:34: start model_add_line... INFO @ Mon, 13 Nov 2017 15:52:34: start X-correlation... INFO @ Mon, 13 Nov 2017 15:52:34: end of X-cor INFO @ Mon, 13 Nov 2017 15:52:34: #2 finished! INFO @ Mon, 13 Nov 2017 15:52:34: #2 predicted fragment length is 152 bps INFO @ Mon, 13 Nov 2017 15:52:34: #2 alternative fragment length(s) may be 152 bps INFO @ Mon, 13 Nov 2017 15:52:34: #2.2 Generate R script for model : SRX2965241.10_model.r WARNING @ Mon, 13 Nov 2017 15:52:34: #2 Since the d (152) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Mon, 13 Nov 2017 15:52:34: #2 You may need to consider one of the other alternative d(s): 152 WARNING @ Mon, 13 Nov 2017 15:52:34: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Mon, 13 Nov 2017 15:52:34: #3 Call peaks... INFO @ Mon, 13 Nov 2017 15:52:34: #3 Pre-compute pvalue-qvalue table... INFO @ Mon, 13 Nov 2017 15:52:35: 56000000 INFO @ Mon, 13 Nov 2017 15:52:39: #1 tag size is determined as 126 bps INFO @ Mon, 13 Nov 2017 15:52:39: #1 tag size = 126 INFO @ Mon, 13 Nov 2017 15:52:39: #1 total tags in treatment: 22318387 INFO @ Mon, 13 Nov 2017 15:52:39: #1 user defined the maximum tags... INFO @ Mon, 13 Nov 2017 15:52:39: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Mon, 13 Nov 2017 15:52:39: #1 tags after filtering in treatment: 20121155 INFO @ Mon, 13 Nov 2017 15:52:39: #1 Redundant rate of treatment: 0.10 INFO @ Mon, 13 Nov 2017 15:52:39: #1 finished! INFO @ Mon, 13 Nov 2017 15:52:39: #2 Build Peak Model... INFO @ Mon, 13 Nov 2017 15:52:39: #2 looking for paired plus/minus strand peaks... INFO @ Mon, 13 Nov 2017 15:52:41: #2 number of paired peaks: 714 WARNING @ Mon, 13 Nov 2017 15:52:41: Fewer paired peaks (714) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 714 pairs to build model! INFO @ Mon, 13 Nov 2017 15:52:41: start model_add_line... INFO @ Mon, 13 Nov 2017 15:52:41: start X-correlation... INFO @ Mon, 13 Nov 2017 15:52:41: end of X-cor INFO @ Mon, 13 Nov 2017 15:52:41: #2 finished! INFO @ Mon, 13 Nov 2017 15:52:41: #2 predicted fragment length is 152 bps INFO @ Mon, 13 Nov 2017 15:52:41: #2 alternative fragment length(s) may be 152 bps INFO @ Mon, 13 Nov 2017 15:52:41: #2.2 Generate R script for model : SRX2965241.20_model.r WARNING @ Mon, 13 Nov 2017 15:52:41: #2 Since the d (152) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Mon, 13 Nov 2017 15:52:41: #2 You may need to consider one of the other alternative d(s): 152 WARNING @ Mon, 13 Nov 2017 15:52:41: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Mon, 13 Nov 2017 15:52:41: #3 Call peaks... INFO @ Mon, 13 Nov 2017 15:52:41: #3 Pre-compute pvalue-qvalue table... INFO @ Mon, 13 Nov 2017 15:52:43: 57000000 INFO @ Mon, 13 Nov 2017 15:52:50: 58000000 INFO @ Mon, 13 Nov 2017 15:52:57: 59000000 INFO @ Mon, 13 Nov 2017 15:53:05: #1 tag size is determined as 126 bps INFO @ Mon, 13 Nov 2017 15:53:05: #1 tag size = 126 INFO @ Mon, 13 Nov 2017 15:53:05: #1 total tags in treatment: 22318387 INFO @ Mon, 13 Nov 2017 15:53:05: #1 user defined the maximum tags... INFO @ Mon, 13 Nov 2017 15:53:05: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Mon, 13 Nov 2017 15:53:05: #1 tags after filtering in treatment: 20121155 INFO @ Mon, 13 Nov 2017 15:53:05: #1 Redundant rate of treatment: 0.10 INFO @ Mon, 13 Nov 2017 15:53:05: #1 finished! INFO @ Mon, 13 Nov 2017 15:53:05: #2 Build Peak Model... INFO @ Mon, 13 Nov 2017 15:53:05: #2 looking for paired plus/minus strand peaks... INFO @ Mon, 13 Nov 2017 15:53:07: #2 number of paired peaks: 714 WARNING @ Mon, 13 Nov 2017 15:53:07: Fewer paired peaks (714) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 714 pairs to build model! INFO @ Mon, 13 Nov 2017 15:53:07: start model_add_line... INFO @ Mon, 13 Nov 2017 15:53:07: start X-correlation... INFO @ Mon, 13 Nov 2017 15:53:07: end of X-cor INFO @ Mon, 13 Nov 2017 15:53:07: #2 finished! INFO @ Mon, 13 Nov 2017 15:53:07: #2 predicted fragment length is 152 bps INFO @ Mon, 13 Nov 2017 15:53:07: #2 alternative fragment length(s) may be 152 bps INFO @ Mon, 13 Nov 2017 15:53:07: #2.2 Generate R script for model : SRX2965241.05_model.r WARNING @ Mon, 13 Nov 2017 15:53:07: #2 Since the d (152) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Mon, 13 Nov 2017 15:53:07: #2 You may need to consider one of the other alternative d(s): 152 WARNING @ Mon, 13 Nov 2017 15:53:07: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Mon, 13 Nov 2017 15:53:07: #3 Call peaks... INFO @ Mon, 13 Nov 2017 15:53:07: #3 Pre-compute pvalue-qvalue table... INFO @ Mon, 13 Nov 2017 15:53:22: #3 Call peaks for each chromosome... INFO @ Mon, 13 Nov 2017 15:53:27: #3 Call peaks for each chromosome... INFO @ Mon, 13 Nov 2017 15:53:46: #4 Write output xls file... SRX2965241.10_peaks.xls INFO @ Mon, 13 Nov 2017 15:53:46: #4 Write peak in narrowPeak format file... SRX2965241.10_peaks.narrowPeak INFO @ Mon, 13 Nov 2017 15:53:46: #4 Write summits bed file... SRX2965241.10_summits.bed INFO @ Mon, 13 Nov 2017 15:53:46: Done! pass1 - making usageList (15 chroms): 1 millis pass2 - checking and writing primary data (1942 records, 4 fields): 5 millis CompletedMACS2peakCalling INFO @ Mon, 13 Nov 2017 15:53:50: #4 Write output xls file... SRX2965241.20_peaks.xls INFO @ Mon, 13 Nov 2017 15:53:50: #4 Write peak in narrowPeak format file... SRX2965241.20_peaks.narrowPeak INFO @ Mon, 13 Nov 2017 15:53:50: #4 Write summits bed file... SRX2965241.20_summits.bed INFO @ Mon, 13 Nov 2017 15:53:50: Done! pass1 - making usageList (15 chroms): 0 millis pass2 - checking and writing primary data (1112 records, 4 fields): 4 millis CompletedMACS2peakCalling INFO @ Mon, 13 Nov 2017 15:53:57: #3 Call peaks for each chromosome... INFO @ Mon, 13 Nov 2017 15:54:23: #4 Write output xls file... SRX2965241.05_peaks.xls INFO @ Mon, 13 Nov 2017 15:54:23: #4 Write peak in narrowPeak format file... SRX2965241.05_peaks.narrowPeak INFO @ Mon, 13 Nov 2017 15:54:23: #4 Write summits bed file... SRX2965241.05_summits.bed INFO @ Mon, 13 Nov 2017 15:54:23: Done! pass1 - making usageList (15 chroms): 1 millis pass2 - checking and writing primary data (3393 records, 4 fields): 8 millis CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。