Job ID = 10175246 sra ファイルのダウンロード中... Completed: 1398795K bytes transferred in 40 seconds (285005K bits/sec), in 1 file. sra ファイルのダウンロードが完了しました。 Read layout: SINGLE fastq に変換中... Written 73470377 spots for /home/okishinya/chipatlas/results/dm3/SRX2804224/SRR5534652.sra Written 73470377 spots total rm: cannot remove `[DSE]RX*': そのようなファイルやディレクトリはありません rm: cannot remove `[DSE]RR*.fastq': そのようなファイルやディレクトリはありません fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:32:32 73470377 reads; of these: 73470377 (100.00%) were unpaired; of these: 1991557 (2.71%) aligned 0 times 47952454 (65.27%) aligned exactly 1 time 23526366 (32.02%) aligned >1 times 97.29% overall alignment rate Time searching: 00:32:32 Overall time: 00:32:32 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 32 files... [bam_rmdupse_core] 12518930 / 71478820 = 0.1751 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Mon, 06 Nov 2017 12:43:30: # Command line: callpeak -t SRX2804224.bam -f BAM -g dm -n SRX2804224.05 -q 1e-05 # ARGUMENTS LIST: # name = SRX2804224.05 # format = BAM # ChIP-seq file = ['SRX2804224.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Mon, 06 Nov 2017 12:43:30: #1 read tag files... INFO @ Mon, 06 Nov 2017 12:43:30: #1 read treatment tags... INFO @ Mon, 06 Nov 2017 12:43:30: # Command line: callpeak -t SRX2804224.bam -f BAM -g dm -n SRX2804224.10 -q 1e-10 # ARGUMENTS LIST: # name = SRX2804224.10 # format = BAM # ChIP-seq file = ['SRX2804224.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Mon, 06 Nov 2017 12:43:30: #1 read tag files... INFO @ Mon, 06 Nov 2017 12:43:30: #1 read treatment tags... INFO @ Mon, 06 Nov 2017 12:43:30: # Command line: callpeak -t SRX2804224.bam -f BAM -g dm -n SRX2804224.20 -q 1e-20 # ARGUMENTS LIST: # name = SRX2804224.20 # format = BAM # ChIP-seq file = ['SRX2804224.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Mon, 06 Nov 2017 12:43:30: #1 read tag files... INFO @ Mon, 06 Nov 2017 12:43:30: #1 read treatment tags... INFO @ Mon, 06 Nov 2017 12:43:37: 1000000 INFO @ Mon, 06 Nov 2017 12:43:37: 1000000 INFO @ Mon, 06 Nov 2017 12:43:37: 1000000 INFO @ Mon, 06 Nov 2017 12:43:44: 2000000 INFO @ Mon, 06 Nov 2017 12:43:44: 2000000 INFO @ Mon, 06 Nov 2017 12:43:44: 2000000 INFO @ Mon, 06 Nov 2017 12:43:51: 3000000 INFO @ Mon, 06 Nov 2017 12:43:52: 3000000 INFO @ Mon, 06 Nov 2017 12:43:52: 3000000 INFO @ Mon, 06 Nov 2017 12:43:58: 4000000 INFO @ Mon, 06 Nov 2017 12:43:59: 4000000 INFO @ Mon, 06 Nov 2017 12:43:59: 4000000 INFO @ Mon, 06 Nov 2017 12:44:05: 5000000 INFO @ Mon, 06 Nov 2017 12:44:06: 5000000 INFO @ Mon, 06 Nov 2017 12:44:06: 5000000 INFO @ Mon, 06 Nov 2017 12:44:12: 6000000 INFO @ Mon, 06 Nov 2017 12:44:14: 6000000 INFO @ Mon, 06 Nov 2017 12:44:14: 6000000 INFO @ Mon, 06 Nov 2017 12:44:19: 7000000 INFO @ Mon, 06 Nov 2017 12:44:21: 7000000 INFO @ Mon, 06 Nov 2017 12:44:21: 7000000 INFO @ Mon, 06 Nov 2017 12:44:26: 8000000 INFO @ Mon, 06 Nov 2017 12:44:28: 8000000 INFO @ Mon, 06 Nov 2017 12:44:28: 8000000 INFO @ Mon, 06 Nov 2017 12:44:33: 9000000 INFO @ Mon, 06 Nov 2017 12:44:35: 9000000 INFO @ Mon, 06 Nov 2017 12:44:35: 9000000 INFO @ Mon, 06 Nov 2017 12:44:40: 10000000 INFO @ Mon, 06 Nov 2017 12:44:43: 10000000 INFO @ Mon, 06 Nov 2017 12:44:43: 10000000 INFO @ Mon, 06 Nov 2017 12:44:46: 11000000 INFO @ Mon, 06 Nov 2017 12:44:50: 11000000 INFO @ Mon, 06 Nov 2017 12:44:50: 11000000 INFO @ Mon, 06 Nov 2017 12:44:53: 12000000 INFO @ Mon, 06 Nov 2017 12:44:57: 12000000 INFO @ Mon, 06 Nov 2017 12:44:58: 12000000 INFO @ Mon, 06 Nov 2017 12:45:00: 13000000 INFO @ Mon, 06 Nov 2017 12:45:05: 13000000 INFO @ Mon, 06 Nov 2017 12:45:05: 13000000 INFO @ Mon, 06 Nov 2017 12:45:07: 14000000 INFO @ Mon, 06 Nov 2017 12:45:12: 14000000 INFO @ Mon, 06 Nov 2017 12:45:12: 14000000 INFO @ Mon, 06 Nov 2017 12:45:14: 15000000 INFO @ Mon, 06 Nov 2017 12:45:20: 15000000 INFO @ Mon, 06 Nov 2017 12:45:20: 15000000 INFO @ Mon, 06 Nov 2017 12:45:21: 16000000 INFO @ Mon, 06 Nov 2017 12:45:27: 16000000 INFO @ Mon, 06 Nov 2017 12:45:27: 16000000 INFO @ Mon, 06 Nov 2017 12:45:28: 17000000 INFO @ Mon, 06 Nov 2017 12:45:34: 17000000 INFO @ Mon, 06 Nov 2017 12:45:34: 17000000 INFO @ Mon, 06 Nov 2017 12:45:35: 18000000 INFO @ Mon, 06 Nov 2017 12:45:42: 18000000 INFO @ Mon, 06 Nov 2017 12:45:42: 18000000 INFO @ Mon, 06 Nov 2017 12:45:42: 19000000 INFO @ Mon, 06 Nov 2017 12:45:49: 20000000 INFO @ Mon, 06 Nov 2017 12:45:49: 19000000 INFO @ Mon, 06 Nov 2017 12:45:49: 19000000 INFO @ Mon, 06 Nov 2017 12:45:56: 21000000 INFO @ Mon, 06 Nov 2017 12:45:57: 20000000 INFO @ Mon, 06 Nov 2017 12:45:57: 20000000 INFO @ Mon, 06 Nov 2017 12:46:03: 22000000 INFO @ Mon, 06 Nov 2017 12:46:04: 21000000 INFO @ Mon, 06 Nov 2017 12:46:04: 21000000 INFO @ Mon, 06 Nov 2017 12:46:10: 23000000 INFO @ Mon, 06 Nov 2017 12:46:12: 22000000 INFO @ Mon, 06 Nov 2017 12:46:12: 22000000 INFO @ Mon, 06 Nov 2017 12:46:17: 24000000 INFO @ Mon, 06 Nov 2017 12:46:19: 23000000 INFO @ Mon, 06 Nov 2017 12:46:19: 23000000 INFO @ Mon, 06 Nov 2017 12:46:24: 25000000 INFO @ Mon, 06 Nov 2017 12:46:27: 24000000 INFO @ Mon, 06 Nov 2017 12:46:27: 24000000 INFO @ Mon, 06 Nov 2017 12:46:31: 26000000 INFO @ Mon, 06 Nov 2017 12:46:35: 25000000 INFO @ Mon, 06 Nov 2017 12:46:35: 25000000 INFO @ Mon, 06 Nov 2017 12:46:37: 27000000 INFO @ Mon, 06 Nov 2017 12:46:42: 26000000 INFO @ Mon, 06 Nov 2017 12:46:42: 26000000 INFO @ Mon, 06 Nov 2017 12:46:44: 28000000 INFO @ Mon, 06 Nov 2017 12:46:50: 27000000 INFO @ Mon, 06 Nov 2017 12:46:50: 27000000 INFO @ Mon, 06 Nov 2017 12:46:51: 29000000 INFO @ Mon, 06 Nov 2017 12:46:57: 28000000 INFO @ Mon, 06 Nov 2017 12:46:57: 28000000 INFO @ Mon, 06 Nov 2017 12:46:58: 30000000 INFO @ Mon, 06 Nov 2017 12:47:05: 29000000 INFO @ Mon, 06 Nov 2017 12:47:05: 29000000 INFO @ Mon, 06 Nov 2017 12:47:05: 31000000 INFO @ Mon, 06 Nov 2017 12:47:12: 32000000 INFO @ Mon, 06 Nov 2017 12:47:13: 30000000 INFO @ Mon, 06 Nov 2017 12:47:13: 30000000 INFO @ Mon, 06 Nov 2017 12:47:19: 33000000 INFO @ Mon, 06 Nov 2017 12:47:20: 31000000 INFO @ Mon, 06 Nov 2017 12:47:20: 31000000 INFO @ Mon, 06 Nov 2017 12:47:26: 34000000 INFO @ Mon, 06 Nov 2017 12:47:28: 32000000 INFO @ Mon, 06 Nov 2017 12:47:28: 32000000 INFO @ Mon, 06 Nov 2017 12:47:33: 35000000 INFO @ Mon, 06 Nov 2017 12:47:35: 33000000 INFO @ Mon, 06 Nov 2017 12:47:35: 33000000 INFO @ Mon, 06 Nov 2017 12:47:40: 36000000 INFO @ Mon, 06 Nov 2017 12:47:43: 34000000 INFO @ Mon, 06 Nov 2017 12:47:43: 34000000 INFO @ Mon, 06 Nov 2017 12:47:47: 37000000 INFO @ Mon, 06 Nov 2017 12:47:51: 35000000 INFO @ Mon, 06 Nov 2017 12:47:51: 35000000 INFO @ Mon, 06 Nov 2017 12:47:54: 38000000 INFO @ Mon, 06 Nov 2017 12:47:58: 36000000 INFO @ Mon, 06 Nov 2017 12:47:58: 36000000 INFO @ Mon, 06 Nov 2017 12:48:01: 39000000 INFO @ Mon, 06 Nov 2017 12:48:06: 37000000 INFO @ Mon, 06 Nov 2017 12:48:06: 37000000 INFO @ Mon, 06 Nov 2017 12:48:09: 40000000 INFO @ Mon, 06 Nov 2017 12:48:14: 38000000 INFO @ Mon, 06 Nov 2017 12:48:14: 38000000 INFO @ Mon, 06 Nov 2017 12:48:16: 41000000 INFO @ Mon, 06 Nov 2017 12:48:23: 39000000 INFO @ Mon, 06 Nov 2017 12:48:23: 39000000 INFO @ Mon, 06 Nov 2017 12:48:24: 42000000 INFO @ Mon, 06 Nov 2017 12:48:31: 40000000 INFO @ Mon, 06 Nov 2017 12:48:31: 40000000 INFO @ Mon, 06 Nov 2017 12:48:31: 43000000 INFO @ Mon, 06 Nov 2017 12:48:39: 44000000 INFO @ Mon, 06 Nov 2017 12:48:39: 41000000 INFO @ Mon, 06 Nov 2017 12:48:39: 41000000 INFO @ Mon, 06 Nov 2017 12:48:46: 45000000 INFO @ Mon, 06 Nov 2017 12:48:47: 42000000 INFO @ Mon, 06 Nov 2017 12:48:47: 42000000 INFO @ Mon, 06 Nov 2017 12:48:54: 46000000 INFO @ Mon, 06 Nov 2017 12:48:56: 43000000 INFO @ Mon, 06 Nov 2017 12:48:56: 43000000 INFO @ Mon, 06 Nov 2017 12:49:02: 47000000 INFO @ Mon, 06 Nov 2017 12:49:04: 44000000 INFO @ Mon, 06 Nov 2017 12:49:04: 44000000 INFO @ Mon, 06 Nov 2017 12:49:09: 48000000 INFO @ Mon, 06 Nov 2017 12:49:13: 45000000 INFO @ Mon, 06 Nov 2017 12:49:13: 45000000 INFO @ Mon, 06 Nov 2017 12:49:17: 49000000 INFO @ Mon, 06 Nov 2017 12:49:21: 46000000 INFO @ Mon, 06 Nov 2017 12:49:21: 46000000 INFO @ Mon, 06 Nov 2017 12:49:25: 50000000 INFO @ Mon, 06 Nov 2017 12:49:30: 47000000 INFO @ Mon, 06 Nov 2017 12:49:30: 47000000 INFO @ Mon, 06 Nov 2017 12:49:33: 51000000 INFO @ Mon, 06 Nov 2017 12:49:38: 48000000 INFO @ Mon, 06 Nov 2017 12:49:38: 48000000 INFO @ Mon, 06 Nov 2017 12:49:40: 52000000 INFO @ Mon, 06 Nov 2017 12:49:46: 49000000 INFO @ Mon, 06 Nov 2017 12:49:46: 49000000 INFO @ Mon, 06 Nov 2017 12:49:48: 53000000 INFO @ Mon, 06 Nov 2017 12:49:54: 50000000 INFO @ Mon, 06 Nov 2017 12:49:54: 50000000 INFO @ Mon, 06 Nov 2017 12:49:55: 54000000 INFO @ Mon, 06 Nov 2017 12:50:03: 51000000 INFO @ Mon, 06 Nov 2017 12:50:03: 51000000 INFO @ Mon, 06 Nov 2017 12:50:03: 55000000 INFO @ Mon, 06 Nov 2017 12:50:10: 56000000 INFO @ Mon, 06 Nov 2017 12:50:11: 52000000 INFO @ Mon, 06 Nov 2017 12:50:11: 52000000 INFO @ Mon, 06 Nov 2017 12:50:18: 57000000 INFO @ Mon, 06 Nov 2017 12:50:19: 53000000 INFO @ Mon, 06 Nov 2017 12:50:19: 53000000 INFO @ Mon, 06 Nov 2017 12:50:25: 58000000 INFO @ Mon, 06 Nov 2017 12:50:28: 54000000 INFO @ Mon, 06 Nov 2017 12:50:28: 54000000 INFO @ Mon, 06 Nov 2017 12:50:33: #1 tag size is determined as 51 bps INFO @ Mon, 06 Nov 2017 12:50:33: #1 tag size = 51 INFO @ Mon, 06 Nov 2017 12:50:33: #1 total tags in treatment: 58959890 INFO @ Mon, 06 Nov 2017 12:50:33: #1 user defined the maximum tags... INFO @ Mon, 06 Nov 2017 12:50:33: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Mon, 06 Nov 2017 12:50:34: #1 tags after filtering in treatment: 58959890 INFO @ Mon, 06 Nov 2017 12:50:34: #1 Redundant rate of treatment: 0.00 INFO @ Mon, 06 Nov 2017 12:50:34: #1 finished! INFO @ Mon, 06 Nov 2017 12:50:34: #2 Build Peak Model... INFO @ Mon, 06 Nov 2017 12:50:34: #2 looking for paired plus/minus strand peaks... INFO @ Mon, 06 Nov 2017 12:50:36: 55000000 INFO @ Mon, 06 Nov 2017 12:50:36: 55000000 INFO @ Mon, 06 Nov 2017 12:50:37: #2 number of paired peaks: 0 WARNING @ Mon, 06 Nov 2017 12:50:37: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Mon, 06 Nov 2017 12:50:37: Process for pairing-model is terminated! cat: SRX2804224.10_peaks.narrowPeak: そのようなファイルやディレクトリはありません pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX2804224.10_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX2804224.10_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX2804224.10_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling INFO @ Mon, 06 Nov 2017 12:50:45: 56000000 INFO @ Mon, 06 Nov 2017 12:50:45: 56000000 INFO @ Mon, 06 Nov 2017 12:50:53: 57000000 INFO @ Mon, 06 Nov 2017 12:50:53: 57000000 INFO @ Mon, 06 Nov 2017 12:51:01: 58000000 INFO @ Mon, 06 Nov 2017 12:51:01: 58000000 INFO @ Mon, 06 Nov 2017 12:51:10: #1 tag size is determined as 51 bps INFO @ Mon, 06 Nov 2017 12:51:10: #1 tag size is determined as 51 bps INFO @ Mon, 06 Nov 2017 12:51:10: #1 tag size = 51 INFO @ Mon, 06 Nov 2017 12:51:10: #1 tag size = 51 INFO @ Mon, 06 Nov 2017 12:51:10: #1 total tags in treatment: 58959890 INFO @ Mon, 06 Nov 2017 12:51:10: #1 total tags in treatment: 58959890 INFO @ Mon, 06 Nov 2017 12:51:10: #1 user defined the maximum tags... INFO @ Mon, 06 Nov 2017 12:51:10: #1 user defined the maximum tags... INFO @ Mon, 06 Nov 2017 12:51:10: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Mon, 06 Nov 2017 12:51:10: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Mon, 06 Nov 2017 12:51:11: #1 tags after filtering in treatment: 58959890 INFO @ Mon, 06 Nov 2017 12:51:11: #1 Redundant rate of treatment: 0.00 INFO @ Mon, 06 Nov 2017 12:51:11: #1 finished! INFO @ Mon, 06 Nov 2017 12:51:11: #2 Build Peak Model... INFO @ Mon, 06 Nov 2017 12:51:11: #2 looking for paired plus/minus strand peaks... INFO @ Mon, 06 Nov 2017 12:51:11: #1 tags after filtering in treatment: 58959890 INFO @ Mon, 06 Nov 2017 12:51:11: #1 Redundant rate of treatment: 0.00 INFO @ Mon, 06 Nov 2017 12:51:11: #1 finished! INFO @ Mon, 06 Nov 2017 12:51:11: #2 Build Peak Model... INFO @ Mon, 06 Nov 2017 12:51:11: #2 looking for paired plus/minus strand peaks... INFO @ Mon, 06 Nov 2017 12:51:15: #2 number of paired peaks: 0 WARNING @ Mon, 06 Nov 2017 12:51:15: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Mon, 06 Nov 2017 12:51:15: Process for pairing-model is terminated! cat: SRX2804224.20_peaks.narrowPeak: そのようなファイルやディレクトリはありません pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX2804224.20_model.r'INFO @ Mon, 06 Nov 2017 12:51:15: #2 number of paired peaks: 0 : そのようなファイルやディレクトリはありません WARNING @ Mon, 06 Nov 2017 12:51:15: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Mon, 06 Nov 2017 12:51:15: Process for pairing-model is terminated! rm: cannot remove `SRX2804224.20_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX2804224.20_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling cat: SRX2804224.05_peaks.narrowPeak: そのようなファイルやディレクトリはありません pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX2804224.05_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX2804224.05_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX2804224.05_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。