Job ID = 1294364 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2019-06-02T21:52:56 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-06-02T21:52:56 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-06-02T21:55:14 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-06-02T22:20:45 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-06-02T22:27:56 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-06-02T22:36:10 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-06-02T22:36:52 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-06-02T23:14:08 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-06-02T23:25:44 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) spots read : 76,590,126 reads read : 153,180,252 reads written : 153,180,252 rm: cannot remove ‘[DSE]RR*’: No such file or directory rm: cannot remove ‘fastqDump_tmp*’: No such file or directory fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:01 Multiseed full-index search: 08:38:26 76590126 reads; of these: 76590126 (100.00%) were paired; of these: 8362322 (10.92%) aligned concordantly 0 times 20291368 (26.49%) aligned concordantly exactly 1 time 47936436 (62.59%) aligned concordantly >1 times ---- 8362322 pairs aligned concordantly 0 times; of these: 1103901 (13.20%) aligned discordantly 1 time ---- 7258421 pairs aligned 0 times concordantly or discordantly; of these: 14516842 mates make up the pairs; of these: 5484955 (37.78%) aligned 0 times 1294563 (8.92%) aligned exactly 1 time 7737324 (53.30%) aligned >1 times 96.42% overall alignment rate Time searching: 08:38:27 Overall time: 08:38:27 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 64 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 29094109 / 69270909 = 0.4200 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Mon, 03 Jun 2019 18:20:03: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX264597/SRX264597.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX264597/SRX264597.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX264597/SRX264597.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX264597/SRX264597.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Mon, 03 Jun 2019 18:20:03: #1 read tag files... INFO @ Mon, 03 Jun 2019 18:20:03: #1 read treatment tags... INFO @ Mon, 03 Jun 2019 18:20:03: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX264597/SRX264597.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX264597/SRX264597.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX264597/SRX264597.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX264597/SRX264597.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Mon, 03 Jun 2019 18:20:03: #1 read tag files... INFO @ Mon, 03 Jun 2019 18:20:03: #1 read treatment tags... INFO @ Mon, 03 Jun 2019 18:20:03: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX264597/SRX264597.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX264597/SRX264597.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX264597/SRX264597.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX264597/SRX264597.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Mon, 03 Jun 2019 18:20:03: #1 read tag files... INFO @ Mon, 03 Jun 2019 18:20:03: #1 read treatment tags... INFO @ Mon, 03 Jun 2019 18:20:12: 1000000 INFO @ Mon, 03 Jun 2019 18:20:12: 1000000 INFO @ Mon, 03 Jun 2019 18:20:12: 1000000 INFO @ Mon, 03 Jun 2019 18:20:20: 2000000 INFO @ Mon, 03 Jun 2019 18:20:20: 2000000 INFO @ Mon, 03 Jun 2019 18:20:21: 2000000 INFO @ Mon, 03 Jun 2019 18:20:28: 3000000 INFO @ Mon, 03 Jun 2019 18:20:29: 3000000 INFO @ Mon, 03 Jun 2019 18:20:30: 3000000 INFO @ Mon, 03 Jun 2019 18:20:36: 4000000 INFO @ Mon, 03 Jun 2019 18:20:36: 4000000 INFO @ Mon, 03 Jun 2019 18:20:38: 4000000 INFO @ Mon, 03 Jun 2019 18:20:45: 5000000 INFO @ Mon, 03 Jun 2019 18:20:46: 5000000 INFO @ Mon, 03 Jun 2019 18:20:47: 5000000 INFO @ Mon, 03 Jun 2019 18:20:54: 6000000 INFO @ Mon, 03 Jun 2019 18:20:55: 6000000 INFO @ Mon, 03 Jun 2019 18:20:56: 6000000 INFO @ Mon, 03 Jun 2019 18:21:03: 7000000 INFO @ Mon, 03 Jun 2019 18:21:03: 7000000 INFO @ Mon, 03 Jun 2019 18:21:04: 7000000 INFO @ Mon, 03 Jun 2019 18:21:11: 8000000 INFO @ Mon, 03 Jun 2019 18:21:11: 8000000 INFO @ Mon, 03 Jun 2019 18:21:13: 8000000 INFO @ Mon, 03 Jun 2019 18:21:19: 9000000 INFO @ Mon, 03 Jun 2019 18:21:19: 9000000 INFO @ Mon, 03 Jun 2019 18:21:21: 9000000 INFO @ Mon, 03 Jun 2019 18:21:27: 10000000 INFO @ Mon, 03 Jun 2019 18:21:27: 10000000 INFO @ Mon, 03 Jun 2019 18:21:29: 10000000 INFO @ Mon, 03 Jun 2019 18:21:35: 11000000 INFO @ Mon, 03 Jun 2019 18:21:35: 11000000 INFO @ Mon, 03 Jun 2019 18:21:38: 11000000 INFO @ Mon, 03 Jun 2019 18:21:44: 12000000 INFO @ Mon, 03 Jun 2019 18:21:44: 12000000 INFO @ Mon, 03 Jun 2019 18:21:46: 12000000 INFO @ Mon, 03 Jun 2019 18:21:51: 13000000 INFO @ Mon, 03 Jun 2019 18:21:52: 13000000 INFO @ Mon, 03 Jun 2019 18:21:55: 13000000 INFO @ Mon, 03 Jun 2019 18:21:59: 14000000 INFO @ Mon, 03 Jun 2019 18:22:01: 14000000 INFO @ Mon, 03 Jun 2019 18:22:03: 14000000 INFO @ Mon, 03 Jun 2019 18:22:09: 15000000 INFO @ Mon, 03 Jun 2019 18:22:10: 15000000 INFO @ Mon, 03 Jun 2019 18:22:13: 15000000 INFO @ Mon, 03 Jun 2019 18:22:17: 16000000 INFO @ Mon, 03 Jun 2019 18:22:18: 16000000 INFO @ Mon, 03 Jun 2019 18:22:21: 16000000 INFO @ Mon, 03 Jun 2019 18:22:25: 17000000 INFO @ Mon, 03 Jun 2019 18:22:26: 17000000 INFO @ Mon, 03 Jun 2019 18:22:29: 17000000 INFO @ Mon, 03 Jun 2019 18:22:33: 18000000 INFO @ Mon, 03 Jun 2019 18:22:34: 18000000 INFO @ Mon, 03 Jun 2019 18:22:38: 18000000 INFO @ Mon, 03 Jun 2019 18:22:41: 19000000 INFO @ Mon, 03 Jun 2019 18:22:41: 19000000 INFO @ Mon, 03 Jun 2019 18:22:46: 19000000 INFO @ Mon, 03 Jun 2019 18:22:50: 20000000 INFO @ Mon, 03 Jun 2019 18:22:50: 20000000 INFO @ Mon, 03 Jun 2019 18:22:55: 20000000 INFO @ Mon, 03 Jun 2019 18:22:58: 21000000 INFO @ Mon, 03 Jun 2019 18:22:59: 21000000 INFO @ Mon, 03 Jun 2019 18:23:04: 21000000 INFO @ Mon, 03 Jun 2019 18:23:06: 22000000 INFO @ Mon, 03 Jun 2019 18:23:08: 22000000 INFO @ Mon, 03 Jun 2019 18:23:13: 22000000 INFO @ Mon, 03 Jun 2019 18:23:14: 23000000 INFO @ Mon, 03 Jun 2019 18:23:16: 23000000 INFO @ Mon, 03 Jun 2019 18:23:21: 23000000 INFO @ Mon, 03 Jun 2019 18:23:24: 24000000 INFO @ Mon, 03 Jun 2019 18:23:24: 24000000 INFO @ Mon, 03 Jun 2019 18:23:30: 24000000 INFO @ Mon, 03 Jun 2019 18:23:32: 25000000 INFO @ Mon, 03 Jun 2019 18:23:33: 25000000 INFO @ Mon, 03 Jun 2019 18:23:38: 25000000 INFO @ Mon, 03 Jun 2019 18:23:40: 26000000 INFO @ Mon, 03 Jun 2019 18:23:40: 26000000 INFO @ Mon, 03 Jun 2019 18:23:47: 26000000 INFO @ Mon, 03 Jun 2019 18:23:47: 27000000 INFO @ Mon, 03 Jun 2019 18:23:48: 27000000 INFO @ Mon, 03 Jun 2019 18:23:54: 27000000 INFO @ Mon, 03 Jun 2019 18:23:55: 28000000 INFO @ Mon, 03 Jun 2019 18:23:56: 28000000 INFO @ Mon, 03 Jun 2019 18:24:03: 28000000 INFO @ Mon, 03 Jun 2019 18:24:04: 29000000 INFO @ Mon, 03 Jun 2019 18:24:05: 29000000 INFO @ Mon, 03 Jun 2019 18:24:12: 30000000 INFO @ Mon, 03 Jun 2019 18:24:12: 29000000 INFO @ Mon, 03 Jun 2019 18:24:14: 30000000 INFO @ Mon, 03 Jun 2019 18:24:20: 31000000 INFO @ Mon, 03 Jun 2019 18:24:21: 30000000 INFO @ Mon, 03 Jun 2019 18:24:22: 31000000 INFO @ Mon, 03 Jun 2019 18:24:29: 32000000 INFO @ Mon, 03 Jun 2019 18:24:30: 31000000 INFO @ Mon, 03 Jun 2019 18:24:30: 32000000 INFO @ Mon, 03 Jun 2019 18:24:38: 33000000 INFO @ Mon, 03 Jun 2019 18:24:38: 32000000 INFO @ Mon, 03 Jun 2019 18:24:39: 33000000 INFO @ Mon, 03 Jun 2019 18:24:46: 34000000 INFO @ Mon, 03 Jun 2019 18:24:47: 33000000 INFO @ Mon, 03 Jun 2019 18:24:47: 34000000 INFO @ Mon, 03 Jun 2019 18:24:54: 35000000 INFO @ Mon, 03 Jun 2019 18:24:55: 35000000 INFO @ Mon, 03 Jun 2019 18:24:55: 34000000 INFO @ Mon, 03 Jun 2019 18:25:01: 36000000 INFO @ Mon, 03 Jun 2019 18:25:03: 36000000 INFO @ Mon, 03 Jun 2019 18:25:04: 35000000 INFO @ Mon, 03 Jun 2019 18:25:11: 37000000 INFO @ Mon, 03 Jun 2019 18:25:12: 37000000 INFO @ Mon, 03 Jun 2019 18:25:12: 36000000 INFO @ Mon, 03 Jun 2019 18:25:19: 38000000 INFO @ Mon, 03 Jun 2019 18:25:21: 38000000 INFO @ Mon, 03 Jun 2019 18:25:21: 37000000 INFO @ Mon, 03 Jun 2019 18:25:26: 39000000 INFO @ Mon, 03 Jun 2019 18:25:28: 39000000 INFO @ Mon, 03 Jun 2019 18:25:29: 38000000 INFO @ Mon, 03 Jun 2019 18:25:34: 40000000 INFO @ Mon, 03 Jun 2019 18:25:38: 40000000 INFO @ Mon, 03 Jun 2019 18:25:39: 39000000 INFO @ Mon, 03 Jun 2019 18:25:45: 41000000 INFO @ Mon, 03 Jun 2019 18:25:48: 40000000 INFO @ Mon, 03 Jun 2019 18:25:48: 41000000 INFO @ Mon, 03 Jun 2019 18:25:54: 42000000 INFO @ Mon, 03 Jun 2019 18:25:57: 41000000 INFO @ Mon, 03 Jun 2019 18:25:57: 42000000 INFO @ Mon, 03 Jun 2019 18:26:02: 43000000 INFO @ Mon, 03 Jun 2019 18:26:05: 42000000 INFO @ Mon, 03 Jun 2019 18:26:06: 43000000 INFO @ Mon, 03 Jun 2019 18:26:11: 44000000 INFO @ Mon, 03 Jun 2019 18:26:15: 43000000 INFO @ Mon, 03 Jun 2019 18:26:16: 44000000 INFO @ Mon, 03 Jun 2019 18:26:19: 45000000 INFO @ Mon, 03 Jun 2019 18:26:24: 44000000 INFO @ Mon, 03 Jun 2019 18:26:26: 45000000 INFO @ Mon, 03 Jun 2019 18:26:28: 46000000 INFO @ Mon, 03 Jun 2019 18:26:32: 45000000 INFO @ Mon, 03 Jun 2019 18:26:35: 46000000 INFO @ Mon, 03 Jun 2019 18:26:36: 47000000 INFO @ Mon, 03 Jun 2019 18:26:41: 46000000 INFO @ Mon, 03 Jun 2019 18:26:44: 48000000 INFO @ Mon, 03 Jun 2019 18:26:45: 47000000 INFO @ Mon, 03 Jun 2019 18:26:50: 47000000 INFO @ Mon, 03 Jun 2019 18:26:54: 49000000 INFO @ Mon, 03 Jun 2019 18:26:55: 48000000 INFO @ Mon, 03 Jun 2019 18:27:00: 48000000 INFO @ Mon, 03 Jun 2019 18:27:04: 50000000 INFO @ Mon, 03 Jun 2019 18:27:04: 49000000 INFO @ Mon, 03 Jun 2019 18:27:08: 49000000 INFO @ Mon, 03 Jun 2019 18:27:12: 51000000 INFO @ Mon, 03 Jun 2019 18:27:13: 50000000 INFO @ Mon, 03 Jun 2019 18:27:17: 50000000 INFO @ Mon, 03 Jun 2019 18:27:21: 52000000 INFO @ Mon, 03 Jun 2019 18:27:23: 51000000 INFO @ Mon, 03 Jun 2019 18:27:26: 51000000 INFO @ Mon, 03 Jun 2019 18:27:30: 53000000 INFO @ Mon, 03 Jun 2019 18:27:33: 52000000 INFO @ Mon, 03 Jun 2019 18:27:35: 52000000 INFO @ Mon, 03 Jun 2019 18:27:38: 54000000 INFO @ Mon, 03 Jun 2019 18:27:43: 53000000 INFO @ Mon, 03 Jun 2019 18:27:44: 53000000 INFO @ Mon, 03 Jun 2019 18:27:46: 55000000 INFO @ Mon, 03 Jun 2019 18:27:52: 54000000 INFO @ Mon, 03 Jun 2019 18:27:52: 54000000 INFO @ Mon, 03 Jun 2019 18:27:54: 56000000 INFO @ Mon, 03 Jun 2019 18:28:01: 55000000 INFO @ Mon, 03 Jun 2019 18:28:02: 55000000 INFO @ Mon, 03 Jun 2019 18:28:03: 57000000 INFO @ Mon, 03 Jun 2019 18:28:11: 56000000 INFO @ Mon, 03 Jun 2019 18:28:11: 56000000 INFO @ Mon, 03 Jun 2019 18:28:12: 58000000 INFO @ Mon, 03 Jun 2019 18:28:20: 57000000 INFO @ Mon, 03 Jun 2019 18:28:20: 57000000 INFO @ Mon, 03 Jun 2019 18:28:21: 59000000 INFO @ Mon, 03 Jun 2019 18:28:30: 58000000 INFO @ Mon, 03 Jun 2019 18:28:30: 58000000 INFO @ Mon, 03 Jun 2019 18:28:30: 60000000 INFO @ Mon, 03 Jun 2019 18:28:38: 59000000 INFO @ Mon, 03 Jun 2019 18:28:39: 61000000 INFO @ Mon, 03 Jun 2019 18:28:40: 59000000 INFO @ Mon, 03 Jun 2019 18:28:47: 62000000 INFO @ Mon, 03 Jun 2019 18:28:47: 60000000 INFO @ Mon, 03 Jun 2019 18:28:48: 60000000 INFO @ Mon, 03 Jun 2019 18:28:55: 63000000 INFO @ Mon, 03 Jun 2019 18:28:56: 61000000 INFO @ Mon, 03 Jun 2019 18:28:57: 61000000 INFO @ Mon, 03 Jun 2019 18:29:04: 64000000 INFO @ Mon, 03 Jun 2019 18:29:05: 62000000 INFO @ Mon, 03 Jun 2019 18:29:07: 62000000 INFO @ Mon, 03 Jun 2019 18:29:11: 65000000 INFO @ Mon, 03 Jun 2019 18:29:13: 63000000 INFO @ Mon, 03 Jun 2019 18:29:15: 63000000 INFO @ Mon, 03 Jun 2019 18:29:19: 66000000 INFO @ Mon, 03 Jun 2019 18:29:22: 64000000 INFO @ Mon, 03 Jun 2019 18:29:24: 64000000 INFO @ Mon, 03 Jun 2019 18:29:28: 67000000 INFO @ Mon, 03 Jun 2019 18:29:31: 65000000 INFO @ Mon, 03 Jun 2019 18:29:34: 65000000 INFO @ Mon, 03 Jun 2019 18:29:38: 68000000 INFO @ Mon, 03 Jun 2019 18:29:41: 66000000 INFO @ Mon, 03 Jun 2019 18:29:42: 66000000 INFO @ Mon, 03 Jun 2019 18:29:46: 69000000 INFO @ Mon, 03 Jun 2019 18:29:51: 67000000 INFO @ Mon, 03 Jun 2019 18:29:51: 67000000 INFO @ Mon, 03 Jun 2019 18:29:54: 70000000 INFO @ Mon, 03 Jun 2019 18:29:59: 68000000 INFO @ Mon, 03 Jun 2019 18:29:59: 68000000 INFO @ Mon, 03 Jun 2019 18:30:02: 71000000 INFO @ Mon, 03 Jun 2019 18:30:07: 69000000 INFO @ Mon, 03 Jun 2019 18:30:08: 69000000 INFO @ Mon, 03 Jun 2019 18:30:10: 72000000 INFO @ Mon, 03 Jun 2019 18:30:16: 70000000 INFO @ Mon, 03 Jun 2019 18:30:18: 70000000 INFO @ Mon, 03 Jun 2019 18:30:19: 73000000 INFO @ Mon, 03 Jun 2019 18:30:25: 71000000 INFO @ Mon, 03 Jun 2019 18:30:26: 71000000 INFO @ Mon, 03 Jun 2019 18:30:27: 74000000 INFO @ Mon, 03 Jun 2019 18:30:33: 72000000 INFO @ Mon, 03 Jun 2019 18:30:35: 72000000 INFO @ Mon, 03 Jun 2019 18:30:35: 75000000 INFO @ Mon, 03 Jun 2019 18:30:42: 73000000 INFO @ Mon, 03 Jun 2019 18:30:44: 73000000 INFO @ Mon, 03 Jun 2019 18:30:45: 76000000 INFO @ Mon, 03 Jun 2019 18:30:52: 74000000 INFO @ Mon, 03 Jun 2019 18:30:53: 77000000 INFO @ Mon, 03 Jun 2019 18:30:54: 74000000 INFO @ Mon, 03 Jun 2019 18:31:00: 75000000 INFO @ Mon, 03 Jun 2019 18:31:01: 78000000 INFO @ Mon, 03 Jun 2019 18:31:03: 75000000 INFO @ Mon, 03 Jun 2019 18:31:09: 76000000 INFO @ Mon, 03 Jun 2019 18:31:09: 79000000 INFO @ Mon, 03 Jun 2019 18:31:12: 76000000 INFO @ Mon, 03 Jun 2019 18:31:17: 77000000 INFO @ Mon, 03 Jun 2019 18:31:18: 80000000 INFO @ Mon, 03 Jun 2019 18:31:21: 77000000 INFO @ Mon, 03 Jun 2019 18:31:26: 78000000 INFO @ Mon, 03 Jun 2019 18:31:27: 81000000 INFO @ Mon, 03 Jun 2019 18:31:31: 78000000 INFO @ Mon, 03 Jun 2019 18:31:34: 79000000 INFO @ Mon, 03 Jun 2019 18:31:36: 82000000 INFO @ Mon, 03 Jun 2019 18:31:39: 79000000 INFO @ Mon, 03 Jun 2019 18:31:42: 80000000 INFO @ Mon, 03 Jun 2019 18:31:45: 83000000 INFO @ Mon, 03 Jun 2019 18:31:48: 80000000 INFO @ Mon, 03 Jun 2019 18:31:50: 81000000 INFO @ Mon, 03 Jun 2019 18:31:55: 84000000 INFO @ Mon, 03 Jun 2019 18:31:58: 81000000 INFO @ Mon, 03 Jun 2019 18:31:59: 82000000 INFO @ Mon, 03 Jun 2019 18:32:04: 85000000 INFO @ Mon, 03 Jun 2019 18:32:06: 82000000 INFO @ Mon, 03 Jun 2019 18:32:08: 83000000 INFO @ Mon, 03 Jun 2019 18:32:12: 86000000 INFO @ Mon, 03 Jun 2019 18:32:15: 83000000 INFO @ Mon, 03 Jun 2019 18:32:17: 84000000 INFO @ Mon, 03 Jun 2019 18:32:21: 87000000 INFO @ Mon, 03 Jun 2019 18:32:23: 84000000 INFO @ Mon, 03 Jun 2019 18:32:25: 85000000 INFO @ Mon, 03 Jun 2019 18:32:29: 88000000 INFO @ Mon, 03 Jun 2019 18:32:32: 85000000 INFO @ Mon, 03 Jun 2019 18:32:34: 86000000 INFO @ Mon, 03 Jun 2019 18:32:38: 89000000 INFO @ Mon, 03 Jun 2019 18:32:41: 86000000 INFO @ Mon, 03 Jun 2019 18:32:43: 87000000 INFO @ Mon, 03 Jun 2019 18:32:43: #1 tag size is determined as 76 bps INFO @ Mon, 03 Jun 2019 18:32:43: #1 tag size = 76 INFO @ Mon, 03 Jun 2019 18:32:43: #1 total tags in treatment: 39716258 INFO @ Mon, 03 Jun 2019 18:32:43: #1 user defined the maximum tags... INFO @ Mon, 03 Jun 2019 18:32:43: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Mon, 03 Jun 2019 18:32:44: #1 tags after filtering in treatment: 25001292 INFO @ Mon, 03 Jun 2019 18:32:44: #1 Redundant rate of treatment: 0.37 INFO @ Mon, 03 Jun 2019 18:32:44: #1 finished! INFO @ Mon, 03 Jun 2019 18:32:44: #2 Build Peak Model... INFO @ Mon, 03 Jun 2019 18:32:44: #2 looking for paired plus/minus strand peaks... INFO @ Mon, 03 Jun 2019 18:32:47: #2 number of paired peaks: 6223 INFO @ Mon, 03 Jun 2019 18:32:47: start model_add_line... INFO @ Mon, 03 Jun 2019 18:32:47: start X-correlation... INFO @ Mon, 03 Jun 2019 18:32:47: end of X-cor INFO @ Mon, 03 Jun 2019 18:32:47: #2 finished! INFO @ Mon, 03 Jun 2019 18:32:47: #2 predicted fragment length is 256 bps INFO @ Mon, 03 Jun 2019 18:32:47: #2 alternative fragment length(s) may be 256 bps INFO @ Mon, 03 Jun 2019 18:32:47: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX264597/SRX264597.05_model.r INFO @ Mon, 03 Jun 2019 18:32:47: #3 Call peaks... INFO @ Mon, 03 Jun 2019 18:32:47: #3 Pre-compute pvalue-qvalue table... INFO @ Mon, 03 Jun 2019 18:32:49: 87000000 INFO @ Mon, 03 Jun 2019 18:32:50: 88000000 INFO @ Mon, 03 Jun 2019 18:32:57: 88000000 INFO @ Mon, 03 Jun 2019 18:32:57: 89000000 INFO @ Mon, 03 Jun 2019 18:33:02: #1 tag size is determined as 76 bps INFO @ Mon, 03 Jun 2019 18:33:02: #1 tag size = 76 INFO @ Mon, 03 Jun 2019 18:33:02: #1 total tags in treatment: 39716258 INFO @ Mon, 03 Jun 2019 18:33:02: #1 user defined the maximum tags... INFO @ Mon, 03 Jun 2019 18:33:02: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Mon, 03 Jun 2019 18:33:03: #1 tags after filtering in treatment: 25001292 INFO @ Mon, 03 Jun 2019 18:33:03: #1 Redundant rate of treatment: 0.37 INFO @ Mon, 03 Jun 2019 18:33:03: #1 finished! INFO @ Mon, 03 Jun 2019 18:33:03: #2 Build Peak Model... INFO @ Mon, 03 Jun 2019 18:33:03: #2 looking for paired plus/minus strand peaks... INFO @ Mon, 03 Jun 2019 18:33:05: 89000000 INFO @ Mon, 03 Jun 2019 18:33:06: #2 number of paired peaks: 6223 INFO @ Mon, 03 Jun 2019 18:33:06: start model_add_line... INFO @ Mon, 03 Jun 2019 18:33:06: start X-correlation... INFO @ Mon, 03 Jun 2019 18:33:06: end of X-cor INFO @ Mon, 03 Jun 2019 18:33:06: #2 finished! INFO @ Mon, 03 Jun 2019 18:33:06: #2 predicted fragment length is 256 bps INFO @ Mon, 03 Jun 2019 18:33:06: #2 alternative fragment length(s) may be 256 bps INFO @ Mon, 03 Jun 2019 18:33:06: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX264597/SRX264597.10_model.r INFO @ Mon, 03 Jun 2019 18:33:06: #3 Call peaks... INFO @ Mon, 03 Jun 2019 18:33:06: #3 Pre-compute pvalue-qvalue table... BedGraph に変換しました。 BigWig に変換中... INFO @ Mon, 03 Jun 2019 18:33:10: #1 tag size is determined as 76 bps INFO @ Mon, 03 Jun 2019 18:33:10: #1 tag size = 76 INFO @ Mon, 03 Jun 2019 18:33:10: #1 total tags in treatment: 39716258 INFO @ Mon, 03 Jun 2019 18:33:10: #1 user defined the maximum tags... INFO @ Mon, 03 Jun 2019 18:33:10: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Mon, 03 Jun 2019 18:33:11: #1 tags after filtering in treatment: 25001292 INFO @ Mon, 03 Jun 2019 18:33:11: #1 Redundant rate of treatment: 0.37 INFO @ Mon, 03 Jun 2019 18:33:11: #1 finished! INFO @ Mon, 03 Jun 2019 18:33:11: #2 Build Peak Model... INFO @ Mon, 03 Jun 2019 18:33:11: #2 looking for paired plus/minus strand peaks... INFO @ Mon, 03 Jun 2019 18:33:14: #2 number of paired peaks: 6223 INFO @ Mon, 03 Jun 2019 18:33:14: start model_add_line... INFO @ Mon, 03 Jun 2019 18:33:14: start X-correlation... INFO @ Mon, 03 Jun 2019 18:33:14: end of X-cor INFO @ Mon, 03 Jun 2019 18:33:14: #2 finished! INFO @ Mon, 03 Jun 2019 18:33:14: #2 predicted fragment length is 256 bps INFO @ Mon, 03 Jun 2019 18:33:14: #2 alternative fragment length(s) may be 256 bps INFO @ Mon, 03 Jun 2019 18:33:14: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX264597/SRX264597.20_model.r INFO @ Mon, 03 Jun 2019 18:33:14: #3 Call peaks... INFO @ Mon, 03 Jun 2019 18:33:14: #3 Pre-compute pvalue-qvalue table... INFO @ Mon, 03 Jun 2019 18:34:28: #3 Call peaks for each chromosome... BigWig に変換しました。 INFO @ Mon, 03 Jun 2019 18:34:47: #3 Call peaks for each chromosome... INFO @ Mon, 03 Jun 2019 18:34:53: #3 Call peaks for each chromosome... INFO @ Mon, 03 Jun 2019 18:34:59: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX264597/SRX264597.05_peaks.xls INFO @ Mon, 03 Jun 2019 18:34:59: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX264597/SRX264597.05_peaks.narrowPeak INFO @ Mon, 03 Jun 2019 18:34:59: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX264597/SRX264597.05_summits.bed INFO @ Mon, 03 Jun 2019 18:34:59: Done! pass1 - making usageList (14 chroms): 7 millis pass2 - checking and writing primary data (19896 records, 4 fields): 28 millis CompletedMACS2peakCalling INFO @ Mon, 03 Jun 2019 18:35:17: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX264597/SRX264597.10_peaks.xls INFO @ Mon, 03 Jun 2019 18:35:17: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX264597/SRX264597.10_peaks.narrowPeak INFO @ Mon, 03 Jun 2019 18:35:17: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX264597/SRX264597.10_summits.bed INFO @ Mon, 03 Jun 2019 18:35:17: Done! pass1 - making usageList (14 chroms): 3 millis pass2 - checking and writing primary data (15521 records, 4 fields): 22 millis CompletedMACS2peakCalling INFO @ Mon, 03 Jun 2019 18:35:23: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX264597/SRX264597.20_peaks.xls INFO @ Mon, 03 Jun 2019 18:35:23: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX264597/SRX264597.20_peaks.narrowPeak INFO @ Mon, 03 Jun 2019 18:35:23: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX264597/SRX264597.20_summits.bed INFO @ Mon, 03 Jun 2019 18:35:23: Done! pass1 - making usageList (14 chroms): 5 millis pass2 - checking and writing primary data (10521 records, 4 fields): 20 millis CompletedMACS2peakCalling