Job ID = 1294351 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2019-06-02T21:36:42 fasterq-dump.2.9.6 sys: connection not found while validating within network system module - Failed to Make Connection in KClientHttpOpen to 'sra-download-internal.ncbi.nlm.nih.gov:443' 2019-06-02T21:36:42 fasterq-dump.2.9.6 err: connection not found while validating within network system module - error with https open 'https://sra-download-internal.ncbi.nlm.nih.gov/traces/sra46/SRR/005188/SRR5312691' 2019-06-02T21:36:42 fasterq-dump.2.9.6 err: invalid accession 'SRR5312691' 2019-06-02T21:47:27 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) spots read : 40,149,848 reads read : 80,299,696 reads written : 80,299,696 rm: cannot remove ‘[DSE]RR*’: No such file or directory rm: cannot remove ‘fastqDump_tmp*’: No such file or directory fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 03:16:28 40149848 reads; of these: 40149848 (100.00%) were paired; of these: 5408945 (13.47%) aligned concordantly 0 times 16930258 (42.17%) aligned concordantly exactly 1 time 17810645 (44.36%) aligned concordantly >1 times ---- 5408945 pairs aligned concordantly 0 times; of these: 1054312 (19.49%) aligned discordantly 1 time ---- 4354633 pairs aligned 0 times concordantly or discordantly; of these: 8709266 mates make up the pairs; of these: 4311755 (49.51%) aligned 0 times 1898182 (21.79%) aligned exactly 1 time 2499329 (28.70%) aligned >1 times 94.63% overall alignment rate Time searching: 03:16:28 Overall time: 03:16:28 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 32 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 4943476 / 35439813 = 0.1395 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Mon, 03 Jun 2019 11:02:20: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX2612516/SRX2612516.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX2612516/SRX2612516.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX2612516/SRX2612516.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX2612516/SRX2612516.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Mon, 03 Jun 2019 11:02:20: #1 read tag files... INFO @ Mon, 03 Jun 2019 11:02:20: #1 read treatment tags... INFO @ Mon, 03 Jun 2019 11:02:20: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX2612516/SRX2612516.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX2612516/SRX2612516.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX2612516/SRX2612516.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX2612516/SRX2612516.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Mon, 03 Jun 2019 11:02:20: #1 read tag files... INFO @ Mon, 03 Jun 2019 11:02:20: #1 read treatment tags... INFO @ Mon, 03 Jun 2019 11:02:20: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX2612516/SRX2612516.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX2612516/SRX2612516.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX2612516/SRX2612516.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX2612516/SRX2612516.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Mon, 03 Jun 2019 11:02:20: #1 read tag files... INFO @ Mon, 03 Jun 2019 11:02:20: #1 read treatment tags... INFO @ Mon, 03 Jun 2019 11:02:28: 1000000 INFO @ Mon, 03 Jun 2019 11:02:28: 1000000 INFO @ Mon, 03 Jun 2019 11:02:28: 1000000 INFO @ Mon, 03 Jun 2019 11:02:36: 2000000 INFO @ Mon, 03 Jun 2019 11:02:36: 2000000 INFO @ Mon, 03 Jun 2019 11:02:36: 2000000 INFO @ Mon, 03 Jun 2019 11:02:43: 3000000 INFO @ Mon, 03 Jun 2019 11:02:44: 3000000 INFO @ Mon, 03 Jun 2019 11:02:44: 3000000 INFO @ Mon, 03 Jun 2019 11:02:51: 4000000 INFO @ Mon, 03 Jun 2019 11:02:52: 4000000 INFO @ Mon, 03 Jun 2019 11:02:52: 4000000 INFO @ Mon, 03 Jun 2019 11:02:58: 5000000 INFO @ Mon, 03 Jun 2019 11:03:00: 5000000 INFO @ Mon, 03 Jun 2019 11:03:00: 5000000 INFO @ Mon, 03 Jun 2019 11:03:06: 6000000 INFO @ Mon, 03 Jun 2019 11:03:08: 6000000 INFO @ Mon, 03 Jun 2019 11:03:08: 6000000 INFO @ Mon, 03 Jun 2019 11:03:14: 7000000 INFO @ Mon, 03 Jun 2019 11:03:16: 7000000 INFO @ Mon, 03 Jun 2019 11:03:16: 7000000 INFO @ Mon, 03 Jun 2019 11:03:21: 8000000 INFO @ Mon, 03 Jun 2019 11:03:24: 8000000 INFO @ Mon, 03 Jun 2019 11:03:24: 8000000 INFO @ Mon, 03 Jun 2019 11:03:29: 9000000 INFO @ Mon, 03 Jun 2019 11:03:32: 9000000 INFO @ Mon, 03 Jun 2019 11:03:32: 9000000 INFO @ Mon, 03 Jun 2019 11:03:37: 10000000 INFO @ Mon, 03 Jun 2019 11:03:40: 10000000 INFO @ Mon, 03 Jun 2019 11:03:40: 10000000 INFO @ Mon, 03 Jun 2019 11:03:44: 11000000 INFO @ Mon, 03 Jun 2019 11:03:48: 11000000 INFO @ Mon, 03 Jun 2019 11:03:48: 11000000 INFO @ Mon, 03 Jun 2019 11:03:52: 12000000 INFO @ Mon, 03 Jun 2019 11:03:56: 12000000 INFO @ Mon, 03 Jun 2019 11:03:56: 12000000 INFO @ Mon, 03 Jun 2019 11:03:59: 13000000 INFO @ Mon, 03 Jun 2019 11:04:04: 13000000 INFO @ Mon, 03 Jun 2019 11:04:04: 13000000 INFO @ Mon, 03 Jun 2019 11:04:07: 14000000 INFO @ Mon, 03 Jun 2019 11:04:12: 14000000 INFO @ Mon, 03 Jun 2019 11:04:12: 14000000 INFO @ Mon, 03 Jun 2019 11:04:14: 15000000 INFO @ Mon, 03 Jun 2019 11:04:19: 15000000 INFO @ Mon, 03 Jun 2019 11:04:20: 15000000 INFO @ Mon, 03 Jun 2019 11:04:22: 16000000 INFO @ Mon, 03 Jun 2019 11:04:27: 16000000 INFO @ Mon, 03 Jun 2019 11:04:28: 16000000 INFO @ Mon, 03 Jun 2019 11:04:29: 17000000 INFO @ Mon, 03 Jun 2019 11:04:35: 17000000 INFO @ Mon, 03 Jun 2019 11:04:35: 17000000 INFO @ Mon, 03 Jun 2019 11:04:37: 18000000 INFO @ Mon, 03 Jun 2019 11:04:43: 18000000 INFO @ Mon, 03 Jun 2019 11:04:43: 18000000 INFO @ Mon, 03 Jun 2019 11:04:45: 19000000 INFO @ Mon, 03 Jun 2019 11:04:51: 19000000 INFO @ Mon, 03 Jun 2019 11:04:51: 19000000 INFO @ Mon, 03 Jun 2019 11:04:52: 20000000 INFO @ Mon, 03 Jun 2019 11:04:59: 20000000 INFO @ Mon, 03 Jun 2019 11:04:59: 20000000 INFO @ Mon, 03 Jun 2019 11:05:00: 21000000 INFO @ Mon, 03 Jun 2019 11:05:07: 21000000 INFO @ Mon, 03 Jun 2019 11:05:07: 21000000 INFO @ Mon, 03 Jun 2019 11:05:07: 22000000 INFO @ Mon, 03 Jun 2019 11:05:15: 23000000 INFO @ Mon, 03 Jun 2019 11:05:15: 22000000 INFO @ Mon, 03 Jun 2019 11:05:15: 22000000 INFO @ Mon, 03 Jun 2019 11:05:22: 24000000 INFO @ Mon, 03 Jun 2019 11:05:23: 23000000 INFO @ Mon, 03 Jun 2019 11:05:23: 23000000 INFO @ Mon, 03 Jun 2019 11:05:30: 25000000 INFO @ Mon, 03 Jun 2019 11:05:31: 24000000 INFO @ Mon, 03 Jun 2019 11:05:31: 24000000 INFO @ Mon, 03 Jun 2019 11:05:37: 26000000 INFO @ Mon, 03 Jun 2019 11:05:39: 25000000 INFO @ Mon, 03 Jun 2019 11:05:39: 25000000 INFO @ Mon, 03 Jun 2019 11:05:45: 27000000 INFO @ Mon, 03 Jun 2019 11:05:47: 26000000 INFO @ Mon, 03 Jun 2019 11:05:47: 26000000 INFO @ Mon, 03 Jun 2019 11:05:53: 28000000 INFO @ Mon, 03 Jun 2019 11:05:55: 27000000 INFO @ Mon, 03 Jun 2019 11:05:55: 27000000 INFO @ Mon, 03 Jun 2019 11:06:00: 29000000 INFO @ Mon, 03 Jun 2019 11:06:03: 28000000 INFO @ Mon, 03 Jun 2019 11:06:03: 28000000 INFO @ Mon, 03 Jun 2019 11:06:07: 30000000 INFO @ Mon, 03 Jun 2019 11:06:11: 29000000 INFO @ Mon, 03 Jun 2019 11:06:11: 29000000 INFO @ Mon, 03 Jun 2019 11:06:15: 31000000 INFO @ Mon, 03 Jun 2019 11:06:18: 30000000 INFO @ Mon, 03 Jun 2019 11:06:18: 30000000 INFO @ Mon, 03 Jun 2019 11:06:22: 32000000 INFO @ Mon, 03 Jun 2019 11:06:26: 31000000 INFO @ Mon, 03 Jun 2019 11:06:26: 31000000 INFO @ Mon, 03 Jun 2019 11:06:29: 33000000 INFO @ Mon, 03 Jun 2019 11:06:33: 32000000 INFO @ Mon, 03 Jun 2019 11:06:33: 32000000 INFO @ Mon, 03 Jun 2019 11:06:36: 34000000 INFO @ Mon, 03 Jun 2019 11:06:40: 33000000 INFO @ Mon, 03 Jun 2019 11:06:41: 33000000 INFO @ Mon, 03 Jun 2019 11:06:44: 35000000 INFO @ Mon, 03 Jun 2019 11:06:48: 34000000 INFO @ Mon, 03 Jun 2019 11:06:48: 34000000 INFO @ Mon, 03 Jun 2019 11:06:51: 36000000 INFO @ Mon, 03 Jun 2019 11:06:55: 35000000 INFO @ Mon, 03 Jun 2019 11:06:56: 35000000 INFO @ Mon, 03 Jun 2019 11:06:58: 37000000 INFO @ Mon, 03 Jun 2019 11:07:03: 36000000 INFO @ Mon, 03 Jun 2019 11:07:03: 36000000 INFO @ Mon, 03 Jun 2019 11:07:05: 38000000 INFO @ Mon, 03 Jun 2019 11:07:10: 37000000 INFO @ Mon, 03 Jun 2019 11:07:10: 37000000 INFO @ Mon, 03 Jun 2019 11:07:12: 39000000 INFO @ Mon, 03 Jun 2019 11:07:17: 38000000 INFO @ Mon, 03 Jun 2019 11:07:17: 38000000 INFO @ Mon, 03 Jun 2019 11:07:19: 40000000 INFO @ Mon, 03 Jun 2019 11:07:25: 39000000 INFO @ Mon, 03 Jun 2019 11:07:25: 39000000 INFO @ Mon, 03 Jun 2019 11:07:27: 41000000 INFO @ Mon, 03 Jun 2019 11:07:32: 40000000 INFO @ Mon, 03 Jun 2019 11:07:32: 40000000 INFO @ Mon, 03 Jun 2019 11:07:34: 42000000 INFO @ Mon, 03 Jun 2019 11:07:40: 41000000 INFO @ Mon, 03 Jun 2019 11:07:40: 41000000 INFO @ Mon, 03 Jun 2019 11:07:41: 43000000 INFO @ Mon, 03 Jun 2019 11:07:47: 42000000 INFO @ Mon, 03 Jun 2019 11:07:47: 42000000 INFO @ Mon, 03 Jun 2019 11:07:48: 44000000 INFO @ Mon, 03 Jun 2019 11:07:54: 43000000 INFO @ Mon, 03 Jun 2019 11:07:54: 43000000 INFO @ Mon, 03 Jun 2019 11:07:56: 45000000 INFO @ Mon, 03 Jun 2019 11:08:02: 44000000 INFO @ Mon, 03 Jun 2019 11:08:02: 44000000 INFO @ Mon, 03 Jun 2019 11:08:03: 46000000 INFO @ Mon, 03 Jun 2019 11:08:09: 45000000 INFO @ Mon, 03 Jun 2019 11:08:09: 45000000 INFO @ Mon, 03 Jun 2019 11:08:10: 47000000 INFO @ Mon, 03 Jun 2019 11:08:17: 46000000 INFO @ Mon, 03 Jun 2019 11:08:17: 46000000 INFO @ Mon, 03 Jun 2019 11:08:17: 48000000 INFO @ Mon, 03 Jun 2019 11:08:24: 47000000 INFO @ Mon, 03 Jun 2019 11:08:24: 47000000 INFO @ Mon, 03 Jun 2019 11:08:24: 49000000 INFO @ Mon, 03 Jun 2019 11:08:31: 48000000 INFO @ Mon, 03 Jun 2019 11:08:32: 50000000 INFO @ Mon, 03 Jun 2019 11:08:32: 48000000 INFO @ Mon, 03 Jun 2019 11:08:39: 49000000 INFO @ Mon, 03 Jun 2019 11:08:39: 51000000 INFO @ Mon, 03 Jun 2019 11:08:39: 49000000 INFO @ Mon, 03 Jun 2019 11:08:46: 50000000 INFO @ Mon, 03 Jun 2019 11:08:46: 52000000 INFO @ Mon, 03 Jun 2019 11:08:47: 50000000 INFO @ Mon, 03 Jun 2019 11:08:53: 53000000 INFO @ Mon, 03 Jun 2019 11:08:53: 51000000 INFO @ Mon, 03 Jun 2019 11:08:54: 51000000 INFO @ Mon, 03 Jun 2019 11:09:01: 54000000 INFO @ Mon, 03 Jun 2019 11:09:01: 52000000 INFO @ Mon, 03 Jun 2019 11:09:01: 52000000 INFO @ Mon, 03 Jun 2019 11:09:08: 55000000 INFO @ Mon, 03 Jun 2019 11:09:08: 53000000 INFO @ Mon, 03 Jun 2019 11:09:09: 53000000 INFO @ Mon, 03 Jun 2019 11:09:15: 56000000 INFO @ Mon, 03 Jun 2019 11:09:15: 54000000 INFO @ Mon, 03 Jun 2019 11:09:16: 54000000 INFO @ Mon, 03 Jun 2019 11:09:22: 57000000 INFO @ Mon, 03 Jun 2019 11:09:23: 55000000 INFO @ Mon, 03 Jun 2019 11:09:23: 55000000 INFO @ Mon, 03 Jun 2019 11:09:29: 58000000 INFO @ Mon, 03 Jun 2019 11:09:30: 56000000 INFO @ Mon, 03 Jun 2019 11:09:30: 56000000 INFO @ Mon, 03 Jun 2019 11:09:37: 59000000 INFO @ Mon, 03 Jun 2019 11:09:37: 57000000 INFO @ Mon, 03 Jun 2019 11:09:38: 57000000 INFO @ Mon, 03 Jun 2019 11:09:45: 58000000 INFO @ Mon, 03 Jun 2019 11:09:45: 60000000 INFO @ Mon, 03 Jun 2019 11:09:45: 58000000 INFO @ Mon, 03 Jun 2019 11:09:52: 59000000 INFO @ Mon, 03 Jun 2019 11:09:52: 61000000 INFO @ Mon, 03 Jun 2019 11:09:53: 59000000 INFO @ Mon, 03 Jun 2019 11:10:00: 62000000 INFO @ Mon, 03 Jun 2019 11:10:00: 60000000 INFO @ Mon, 03 Jun 2019 11:10:01: 60000000 INFO @ Mon, 03 Jun 2019 11:10:07: 63000000 INFO @ Mon, 03 Jun 2019 11:10:07: 61000000 INFO @ Mon, 03 Jun 2019 11:10:08: 61000000 INFO @ Mon, 03 Jun 2019 11:10:14: 64000000 INFO @ Mon, 03 Jun 2019 11:10:15: 62000000 INFO @ Mon, 03 Jun 2019 11:10:16: 62000000 INFO @ Mon, 03 Jun 2019 11:10:21: 65000000 INFO @ Mon, 03 Jun 2019 11:10:22: 63000000 INFO @ Mon, 03 Jun 2019 11:10:23: 63000000 INFO @ Mon, 03 Jun 2019 11:10:28: 66000000 INFO @ Mon, 03 Jun 2019 11:10:29: 64000000 INFO @ Mon, 03 Jun 2019 11:10:29: #1 tag size is determined as 51 bps INFO @ Mon, 03 Jun 2019 11:10:29: #1 tag size = 51 INFO @ Mon, 03 Jun 2019 11:10:29: #1 total tags in treatment: 29876258 INFO @ Mon, 03 Jun 2019 11:10:29: #1 user defined the maximum tags... INFO @ Mon, 03 Jun 2019 11:10:29: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Mon, 03 Jun 2019 11:10:30: #1 tags after filtering in treatment: 23007083 INFO @ Mon, 03 Jun 2019 11:10:30: #1 Redundant rate of treatment: 0.23 INFO @ Mon, 03 Jun 2019 11:10:30: #1 finished! INFO @ Mon, 03 Jun 2019 11:10:30: #2 Build Peak Model... INFO @ Mon, 03 Jun 2019 11:10:30: #2 looking for paired plus/minus strand peaks... INFO @ Mon, 03 Jun 2019 11:10:31: 64000000 INFO @ Mon, 03 Jun 2019 11:10:33: #2 number of paired peaks: 2507 INFO @ Mon, 03 Jun 2019 11:10:33: start model_add_line... INFO @ Mon, 03 Jun 2019 11:10:33: start X-correlation... INFO @ Mon, 03 Jun 2019 11:10:33: end of X-cor INFO @ Mon, 03 Jun 2019 11:10:33: #2 finished! INFO @ Mon, 03 Jun 2019 11:10:33: #2 predicted fragment length is 159 bps INFO @ Mon, 03 Jun 2019 11:10:33: #2 alternative fragment length(s) may be 4,159 bps INFO @ Mon, 03 Jun 2019 11:10:33: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX2612516/SRX2612516.05_model.r INFO @ Mon, 03 Jun 2019 11:10:33: #3 Call peaks... INFO @ Mon, 03 Jun 2019 11:10:33: #3 Pre-compute pvalue-qvalue table... INFO @ Mon, 03 Jun 2019 11:10:36: 65000000 INFO @ Mon, 03 Jun 2019 11:10:38: 65000000 INFO @ Mon, 03 Jun 2019 11:10:44: 66000000 INFO @ Mon, 03 Jun 2019 11:10:45: #1 tag size is determined as 51 bps INFO @ Mon, 03 Jun 2019 11:10:45: #1 tag size = 51 INFO @ Mon, 03 Jun 2019 11:10:45: #1 total tags in treatment: 29876258 INFO @ Mon, 03 Jun 2019 11:10:45: #1 user defined the maximum tags... INFO @ Mon, 03 Jun 2019 11:10:45: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Mon, 03 Jun 2019 11:10:45: 66000000 INFO @ Mon, 03 Jun 2019 11:10:45: #1 tags after filtering in treatment: 23007083 INFO @ Mon, 03 Jun 2019 11:10:45: #1 Redundant rate of treatment: 0.23 INFO @ Mon, 03 Jun 2019 11:10:45: #1 finished! INFO @ Mon, 03 Jun 2019 11:10:45: #2 Build Peak Model... INFO @ Mon, 03 Jun 2019 11:10:45: #2 looking for paired plus/minus strand peaks... INFO @ Mon, 03 Jun 2019 11:10:46: #1 tag size is determined as 51 bps INFO @ Mon, 03 Jun 2019 11:10:46: #1 tag size = 51 INFO @ Mon, 03 Jun 2019 11:10:46: #1 total tags in treatment: 29876258 INFO @ Mon, 03 Jun 2019 11:10:46: #1 user defined the maximum tags... INFO @ Mon, 03 Jun 2019 11:10:46: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Mon, 03 Jun 2019 11:10:47: #1 tags after filtering in treatment: 23007083 INFO @ Mon, 03 Jun 2019 11:10:47: #1 Redundant rate of treatment: 0.23 INFO @ Mon, 03 Jun 2019 11:10:47: #1 finished! INFO @ Mon, 03 Jun 2019 11:10:47: #2 Build Peak Model... INFO @ Mon, 03 Jun 2019 11:10:47: #2 looking for paired plus/minus strand peaks... INFO @ Mon, 03 Jun 2019 11:10:48: #2 number of paired peaks: 2507 INFO @ Mon, 03 Jun 2019 11:10:48: start model_add_line... INFO @ Mon, 03 Jun 2019 11:10:48: start X-correlation... INFO @ Mon, 03 Jun 2019 11:10:48: end of X-cor INFO @ Mon, 03 Jun 2019 11:10:48: #2 finished! INFO @ Mon, 03 Jun 2019 11:10:48: #2 predicted fragment length is 159 bps INFO @ Mon, 03 Jun 2019 11:10:48: #2 alternative fragment length(s) may be 4,159 bps INFO @ Mon, 03 Jun 2019 11:10:48: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX2612516/SRX2612516.20_model.r INFO @ Mon, 03 Jun 2019 11:10:48: #3 Call peaks... INFO @ Mon, 03 Jun 2019 11:10:48: #3 Pre-compute pvalue-qvalue table... INFO @ Mon, 03 Jun 2019 11:10:49: #2 number of paired peaks: 2507 INFO @ Mon, 03 Jun 2019 11:10:49: start model_add_line... INFO @ Mon, 03 Jun 2019 11:10:49: start X-correlation... INFO @ Mon, 03 Jun 2019 11:10:49: end of X-cor INFO @ Mon, 03 Jun 2019 11:10:49: #2 finished! INFO @ Mon, 03 Jun 2019 11:10:49: #2 predicted fragment length is 159 bps INFO @ Mon, 03 Jun 2019 11:10:49: #2 alternative fragment length(s) may be 4,159 bps INFO @ Mon, 03 Jun 2019 11:10:49: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX2612516/SRX2612516.10_model.r INFO @ Mon, 03 Jun 2019 11:10:49: #3 Call peaks... INFO @ Mon, 03 Jun 2019 11:10:49: #3 Pre-compute pvalue-qvalue table... INFO @ Mon, 03 Jun 2019 11:11:40: #3 Call peaks for each chromosome... INFO @ Mon, 03 Jun 2019 11:11:55: #3 Call peaks for each chromosome... INFO @ Mon, 03 Jun 2019 11:11:57: #3 Call peaks for each chromosome... INFO @ Mon, 03 Jun 2019 11:12:08: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX2612516/SRX2612516.05_peaks.xls INFO @ Mon, 03 Jun 2019 11:12:08: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX2612516/SRX2612516.05_peaks.narrowPeak INFO @ Mon, 03 Jun 2019 11:12:08: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX2612516/SRX2612516.05_summits.bed INFO @ Mon, 03 Jun 2019 11:12:08: Done! pass1 - making usageList (15 chroms): 6 millis pass2 - checking and writing primary data (12354 records, 4 fields): 18 millis CompletedMACS2peakCalling INFO @ Mon, 03 Jun 2019 11:12:23: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX2612516/SRX2612516.20_peaks.xls INFO @ Mon, 03 Jun 2019 11:12:23: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX2612516/SRX2612516.20_peaks.narrowPeak INFO @ Mon, 03 Jun 2019 11:12:23: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX2612516/SRX2612516.20_summits.bed INFO @ Mon, 03 Jun 2019 11:12:23: Done! pass1 - making usageList (15 chroms): 2 millis pass2 - checking and writing primary data (3200 records, 4 fields): 6 millis CompletedMACS2peakCalling INFO @ Mon, 03 Jun 2019 11:12:25: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX2612516/SRX2612516.10_peaks.xls INFO @ Mon, 03 Jun 2019 11:12:25: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX2612516/SRX2612516.10_peaks.narrowPeak INFO @ Mon, 03 Jun 2019 11:12:25: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX2612516/SRX2612516.10_summits.bed INFO @ Mon, 03 Jun 2019 11:12:25: Done! pass1 - making usageList (15 chroms): 4 millis pass2 - checking and writing primary data (7697 records, 4 fields): 16 millis CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。