Job ID = 6527632 SRX = SRX1704848 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2020-06-29T13:06:21 prefetch.2.10.7: 1) Downloading 'SRR3383182'... 2020-06-29T13:06:21 prefetch.2.10.7: Downloading via HTTPS... 2020-06-29T13:16:33 prefetch.2.10.7: HTTPS download succeed 2020-06-29T13:16:33 prefetch.2.10.7: 1) 'SRR3383182' was downloaded successfully 2020-06-29T13:16:33 prefetch.2.10.7: 'SRR3383182' has 0 unresolved dependencies Read 36063388 spots for SRR3383182/SRR3383182.sra Written 36063388 spots for SRR3383182/SRR3383182.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:41:32 36063388 reads; of these: 36063388 (100.00%) were paired; of these: 2140621 (5.94%) aligned concordantly 0 times 20290456 (56.26%) aligned concordantly exactly 1 time 13632311 (37.80%) aligned concordantly >1 times ---- 2140621 pairs aligned concordantly 0 times; of these: 424449 (19.83%) aligned discordantly 1 time ---- 1716172 pairs aligned 0 times concordantly or discordantly; of these: 3432344 mates make up the pairs; of these: 1514686 (44.13%) aligned 0 times 834419 (24.31%) aligned exactly 1 time 1083239 (31.56%) aligned >1 times 97.90% overall alignment rate Time searching: 01:41:32 Overall time: 01:41:32 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 32 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 5581587 / 34209238 = 0.1632 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 30 Jun 2020 00:34:17: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX1704848/SRX1704848.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX1704848/SRX1704848.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX1704848/SRX1704848.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX1704848/SRX1704848.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 30 Jun 2020 00:34:17: #1 read tag files... INFO @ Tue, 30 Jun 2020 00:34:17: #1 read treatment tags... INFO @ Tue, 30 Jun 2020 00:34:23: 1000000 INFO @ Tue, 30 Jun 2020 00:34:30: 2000000 INFO @ Tue, 30 Jun 2020 00:34:37: 3000000 INFO @ Tue, 30 Jun 2020 00:34:43: 4000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 30 Jun 2020 00:34:47: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX1704848/SRX1704848.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX1704848/SRX1704848.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX1704848/SRX1704848.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX1704848/SRX1704848.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 30 Jun 2020 00:34:47: #1 read tag files... INFO @ Tue, 30 Jun 2020 00:34:47: #1 read treatment tags... INFO @ Tue, 30 Jun 2020 00:34:51: 5000000 INFO @ Tue, 30 Jun 2020 00:34:54: 1000000 INFO @ Tue, 30 Jun 2020 00:34:58: 6000000 INFO @ Tue, 30 Jun 2020 00:35:01: 2000000 INFO @ Tue, 30 Jun 2020 00:35:06: 7000000 INFO @ Tue, 30 Jun 2020 00:35:09: 3000000 INFO @ Tue, 30 Jun 2020 00:35:14: 8000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 30 Jun 2020 00:35:16: 4000000 INFO @ Tue, 30 Jun 2020 00:35:17: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX1704848/SRX1704848.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX1704848/SRX1704848.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX1704848/SRX1704848.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX1704848/SRX1704848.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 30 Jun 2020 00:35:17: #1 read tag files... INFO @ Tue, 30 Jun 2020 00:35:17: #1 read treatment tags... INFO @ Tue, 30 Jun 2020 00:35:22: 9000000 INFO @ Tue, 30 Jun 2020 00:35:23: 5000000 INFO @ Tue, 30 Jun 2020 00:35:24: 1000000 INFO @ Tue, 30 Jun 2020 00:35:30: 10000000 INFO @ Tue, 30 Jun 2020 00:35:30: 6000000 INFO @ Tue, 30 Jun 2020 00:35:32: 2000000 INFO @ Tue, 30 Jun 2020 00:35:37: 7000000 INFO @ Tue, 30 Jun 2020 00:35:37: 11000000 INFO @ Tue, 30 Jun 2020 00:35:39: 3000000 INFO @ Tue, 30 Jun 2020 00:35:44: 8000000 INFO @ Tue, 30 Jun 2020 00:35:45: 12000000 INFO @ Tue, 30 Jun 2020 00:35:46: 4000000 INFO @ Tue, 30 Jun 2020 00:35:51: 9000000 INFO @ Tue, 30 Jun 2020 00:35:53: 5000000 INFO @ Tue, 30 Jun 2020 00:35:53: 13000000 INFO @ Tue, 30 Jun 2020 00:35:58: 10000000 INFO @ Tue, 30 Jun 2020 00:36:00: 6000000 INFO @ Tue, 30 Jun 2020 00:36:01: 14000000 INFO @ Tue, 30 Jun 2020 00:36:05: 11000000 INFO @ Tue, 30 Jun 2020 00:36:07: 7000000 INFO @ Tue, 30 Jun 2020 00:36:08: 15000000 INFO @ Tue, 30 Jun 2020 00:36:13: 12000000 INFO @ Tue, 30 Jun 2020 00:36:14: 8000000 INFO @ Tue, 30 Jun 2020 00:36:15: 16000000 INFO @ Tue, 30 Jun 2020 00:36:20: 13000000 INFO @ Tue, 30 Jun 2020 00:36:21: 9000000 INFO @ Tue, 30 Jun 2020 00:36:23: 17000000 INFO @ Tue, 30 Jun 2020 00:36:27: 14000000 INFO @ Tue, 30 Jun 2020 00:36:29: 10000000 INFO @ Tue, 30 Jun 2020 00:36:30: 18000000 INFO @ Tue, 30 Jun 2020 00:36:34: 15000000 INFO @ Tue, 30 Jun 2020 00:36:36: 11000000 INFO @ Tue, 30 Jun 2020 00:36:38: 19000000 INFO @ Tue, 30 Jun 2020 00:36:42: 16000000 INFO @ Tue, 30 Jun 2020 00:36:43: 12000000 INFO @ Tue, 30 Jun 2020 00:36:45: 20000000 INFO @ Tue, 30 Jun 2020 00:36:49: 17000000 INFO @ Tue, 30 Jun 2020 00:36:50: 13000000 INFO @ Tue, 30 Jun 2020 00:36:52: 21000000 INFO @ Tue, 30 Jun 2020 00:36:56: 18000000 INFO @ Tue, 30 Jun 2020 00:36:57: 14000000 INFO @ Tue, 30 Jun 2020 00:36:59: 22000000 INFO @ Tue, 30 Jun 2020 00:37:04: 19000000 INFO @ Tue, 30 Jun 2020 00:37:05: 15000000 INFO @ Tue, 30 Jun 2020 00:37:07: 23000000 INFO @ Tue, 30 Jun 2020 00:37:11: 20000000 INFO @ Tue, 30 Jun 2020 00:37:12: 16000000 INFO @ Tue, 30 Jun 2020 00:37:14: 24000000 INFO @ Tue, 30 Jun 2020 00:37:18: 21000000 INFO @ Tue, 30 Jun 2020 00:37:19: 17000000 INFO @ Tue, 30 Jun 2020 00:37:21: 25000000 INFO @ Tue, 30 Jun 2020 00:37:25: 22000000 INFO @ Tue, 30 Jun 2020 00:37:26: 18000000 INFO @ Tue, 30 Jun 2020 00:37:28: 26000000 INFO @ Tue, 30 Jun 2020 00:37:33: 23000000 INFO @ Tue, 30 Jun 2020 00:37:34: 19000000 INFO @ Tue, 30 Jun 2020 00:37:36: 27000000 INFO @ Tue, 30 Jun 2020 00:37:40: 24000000 INFO @ Tue, 30 Jun 2020 00:37:41: 20000000 INFO @ Tue, 30 Jun 2020 00:37:43: 28000000 INFO @ Tue, 30 Jun 2020 00:37:48: 25000000 INFO @ Tue, 30 Jun 2020 00:37:48: 21000000 INFO @ Tue, 30 Jun 2020 00:37:50: 29000000 INFO @ Tue, 30 Jun 2020 00:37:55: 26000000 INFO @ Tue, 30 Jun 2020 00:37:56: 22000000 INFO @ Tue, 30 Jun 2020 00:37:57: 30000000 INFO @ Tue, 30 Jun 2020 00:38:02: 27000000 INFO @ Tue, 30 Jun 2020 00:38:03: 23000000 INFO @ Tue, 30 Jun 2020 00:38:04: 31000000 INFO @ Tue, 30 Jun 2020 00:38:10: 28000000 INFO @ Tue, 30 Jun 2020 00:38:10: 24000000 INFO @ Tue, 30 Jun 2020 00:38:11: 32000000 INFO @ Tue, 30 Jun 2020 00:38:17: 29000000 INFO @ Tue, 30 Jun 2020 00:38:18: 25000000 INFO @ Tue, 30 Jun 2020 00:38:19: 33000000 INFO @ Tue, 30 Jun 2020 00:38:24: 30000000 INFO @ Tue, 30 Jun 2020 00:38:25: 26000000 INFO @ Tue, 30 Jun 2020 00:38:26: 34000000 INFO @ Tue, 30 Jun 2020 00:38:31: 31000000 INFO @ Tue, 30 Jun 2020 00:38:32: 27000000 INFO @ Tue, 30 Jun 2020 00:38:33: 35000000 INFO @ Tue, 30 Jun 2020 00:38:39: 32000000 INFO @ Tue, 30 Jun 2020 00:38:40: 28000000 INFO @ Tue, 30 Jun 2020 00:38:40: 36000000 INFO @ Tue, 30 Jun 2020 00:38:46: 33000000 INFO @ Tue, 30 Jun 2020 00:38:47: 29000000 INFO @ Tue, 30 Jun 2020 00:38:47: 37000000 INFO @ Tue, 30 Jun 2020 00:38:53: 34000000 INFO @ Tue, 30 Jun 2020 00:38:54: 30000000 INFO @ Tue, 30 Jun 2020 00:38:54: 38000000 INFO @ Tue, 30 Jun 2020 00:39:01: 35000000 INFO @ Tue, 30 Jun 2020 00:39:01: 31000000 INFO @ Tue, 30 Jun 2020 00:39:02: 39000000 INFO @ Tue, 30 Jun 2020 00:39:08: 36000000 INFO @ Tue, 30 Jun 2020 00:39:09: 32000000 INFO @ Tue, 30 Jun 2020 00:39:09: 40000000 INFO @ Tue, 30 Jun 2020 00:39:15: 37000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 30 Jun 2020 00:39:16: 33000000 INFO @ Tue, 30 Jun 2020 00:39:16: 41000000 INFO @ Tue, 30 Jun 2020 00:39:22: 38000000 INFO @ Tue, 30 Jun 2020 00:39:23: 34000000 INFO @ Tue, 30 Jun 2020 00:39:24: 42000000 INFO @ Tue, 30 Jun 2020 00:39:30: 39000000 INFO @ Tue, 30 Jun 2020 00:39:30: 35000000 INFO @ Tue, 30 Jun 2020 00:39:31: 43000000 INFO @ Tue, 30 Jun 2020 00:39:37: 40000000 INFO @ Tue, 30 Jun 2020 00:39:37: 36000000 INFO @ Tue, 30 Jun 2020 00:39:38: 44000000 INFO @ Tue, 30 Jun 2020 00:39:44: 41000000 INFO @ Tue, 30 Jun 2020 00:39:45: 37000000 INFO @ Tue, 30 Jun 2020 00:39:46: 45000000 INFO @ Tue, 30 Jun 2020 00:39:51: 42000000 INFO @ Tue, 30 Jun 2020 00:39:52: 38000000 INFO @ Tue, 30 Jun 2020 00:39:53: 46000000 INFO @ Tue, 30 Jun 2020 00:39:59: 43000000 INFO @ Tue, 30 Jun 2020 00:39:59: 39000000 INFO @ Tue, 30 Jun 2020 00:40:01: 47000000 INFO @ Tue, 30 Jun 2020 00:40:06: 44000000 INFO @ Tue, 30 Jun 2020 00:40:06: 40000000 INFO @ Tue, 30 Jun 2020 00:40:08: 48000000 INFO @ Tue, 30 Jun 2020 00:40:13: 41000000 INFO @ Tue, 30 Jun 2020 00:40:13: 45000000 INFO @ Tue, 30 Jun 2020 00:40:15: 49000000 INFO @ Tue, 30 Jun 2020 00:40:20: 42000000 INFO @ Tue, 30 Jun 2020 00:40:20: 46000000 INFO @ Tue, 30 Jun 2020 00:40:22: 50000000 BigWig に変換しました。 INFO @ Tue, 30 Jun 2020 00:40:27: 43000000 INFO @ Tue, 30 Jun 2020 00:40:27: 47000000 INFO @ Tue, 30 Jun 2020 00:40:30: 51000000 INFO @ Tue, 30 Jun 2020 00:40:34: 44000000 INFO @ Tue, 30 Jun 2020 00:40:35: 48000000 INFO @ Tue, 30 Jun 2020 00:40:37: 52000000 INFO @ Tue, 30 Jun 2020 00:40:41: 45000000 INFO @ Tue, 30 Jun 2020 00:40:42: 49000000 INFO @ Tue, 30 Jun 2020 00:40:45: 53000000 INFO @ Tue, 30 Jun 2020 00:40:48: 46000000 INFO @ Tue, 30 Jun 2020 00:40:49: 50000000 INFO @ Tue, 30 Jun 2020 00:40:52: 54000000 INFO @ Tue, 30 Jun 2020 00:40:55: 47000000 INFO @ Tue, 30 Jun 2020 00:40:56: 51000000 INFO @ Tue, 30 Jun 2020 00:41:00: 55000000 INFO @ Tue, 30 Jun 2020 00:41:03: 48000000 INFO @ Tue, 30 Jun 2020 00:41:03: 52000000 INFO @ Tue, 30 Jun 2020 00:41:07: 56000000 INFO @ Tue, 30 Jun 2020 00:41:10: 49000000 INFO @ Tue, 30 Jun 2020 00:41:10: 53000000 INFO @ Tue, 30 Jun 2020 00:41:15: 57000000 INFO @ Tue, 30 Jun 2020 00:41:17: 50000000 INFO @ Tue, 30 Jun 2020 00:41:18: 54000000 INFO @ Tue, 30 Jun 2020 00:41:22: 58000000 INFO @ Tue, 30 Jun 2020 00:41:25: 51000000 INFO @ Tue, 30 Jun 2020 00:41:25: 55000000 INFO @ Tue, 30 Jun 2020 00:41:30: 59000000 INFO @ Tue, 30 Jun 2020 00:41:32: 52000000 INFO @ Tue, 30 Jun 2020 00:41:32: 56000000 INFO @ Tue, 30 Jun 2020 00:41:33: #1 tag size is determined as 51 bps INFO @ Tue, 30 Jun 2020 00:41:33: #1 tag size = 51 INFO @ Tue, 30 Jun 2020 00:41:33: #1 total tags in treatment: 28351681 INFO @ Tue, 30 Jun 2020 00:41:33: #1 user defined the maximum tags... INFO @ Tue, 30 Jun 2020 00:41:33: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 30 Jun 2020 00:41:34: #1 tags after filtering in treatment: 19225356 INFO @ Tue, 30 Jun 2020 00:41:34: #1 Redundant rate of treatment: 0.32 INFO @ Tue, 30 Jun 2020 00:41:34: #1 finished! INFO @ Tue, 30 Jun 2020 00:41:34: #2 Build Peak Model... INFO @ Tue, 30 Jun 2020 00:41:34: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 30 Jun 2020 00:41:35: #2 number of paired peaks: 50 WARNING @ Tue, 30 Jun 2020 00:41:35: Too few paired peaks (50) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Tue, 30 Jun 2020 00:41:35: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/dm3/SRX1704848/SRX1704848.05_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/dm3/SRX1704848/SRX1704848.05_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/dm3/SRX1704848/SRX1704848.05_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/dm3/SRX1704848/SRX1704848.05_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling INFO @ Tue, 30 Jun 2020 00:41:39: 53000000 INFO @ Tue, 30 Jun 2020 00:41:39: 57000000 INFO @ Tue, 30 Jun 2020 00:41:46: 54000000 INFO @ Tue, 30 Jun 2020 00:41:46: 58000000 INFO @ Tue, 30 Jun 2020 00:41:53: 55000000 INFO @ Tue, 30 Jun 2020 00:41:53: 59000000 INFO @ Tue, 30 Jun 2020 00:41:56: #1 tag size is determined as 51 bps INFO @ Tue, 30 Jun 2020 00:41:56: #1 tag size = 51 INFO @ Tue, 30 Jun 2020 00:41:56: #1 total tags in treatment: 28351681 INFO @ Tue, 30 Jun 2020 00:41:56: #1 user defined the maximum tags... INFO @ Tue, 30 Jun 2020 00:41:56: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 30 Jun 2020 00:41:57: #1 tags after filtering in treatment: 19225356 INFO @ Tue, 30 Jun 2020 00:41:57: #1 Redundant rate of treatment: 0.32 INFO @ Tue, 30 Jun 2020 00:41:57: #1 finished! INFO @ Tue, 30 Jun 2020 00:41:57: #2 Build Peak Model... INFO @ Tue, 30 Jun 2020 00:41:57: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 30 Jun 2020 00:41:58: #2 number of paired peaks: 50 WARNING @ Tue, 30 Jun 2020 00:41:58: Too few paired peaks (50) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Tue, 30 Jun 2020 00:41:58: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/dm3/SRX1704848/SRX1704848.10_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/dm3/SRX1704848/SRX1704848.10_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/dm3/SRX1704848/SRX1704848.10_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/dm3/SRX1704848/SRX1704848.10_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling INFO @ Tue, 30 Jun 2020 00:42:00: 56000000 INFO @ Tue, 30 Jun 2020 00:42:06: 57000000 INFO @ Tue, 30 Jun 2020 00:42:12: 58000000 INFO @ Tue, 30 Jun 2020 00:42:18: 59000000 INFO @ Tue, 30 Jun 2020 00:42:20: #1 tag size is determined as 51 bps INFO @ Tue, 30 Jun 2020 00:42:20: #1 tag size = 51 INFO @ Tue, 30 Jun 2020 00:42:20: #1 total tags in treatment: 28351681 INFO @ Tue, 30 Jun 2020 00:42:20: #1 user defined the maximum tags... INFO @ Tue, 30 Jun 2020 00:42:20: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 30 Jun 2020 00:42:21: #1 tags after filtering in treatment: 19225356 INFO @ Tue, 30 Jun 2020 00:42:21: #1 Redundant rate of treatment: 0.32 INFO @ Tue, 30 Jun 2020 00:42:21: #1 finished! INFO @ Tue, 30 Jun 2020 00:42:21: #2 Build Peak Model... INFO @ Tue, 30 Jun 2020 00:42:21: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 30 Jun 2020 00:42:22: #2 number of paired peaks: 50 WARNING @ Tue, 30 Jun 2020 00:42:22: Too few paired peaks (50) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Tue, 30 Jun 2020 00:42:22: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/dm3/SRX1704848/SRX1704848.20_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/dm3/SRX1704848/SRX1704848.20_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/dm3/SRX1704848/SRX1704848.20_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/dm3/SRX1704848/SRX1704848.20_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling