Job ID = 1293826 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2019-06-02T17:42:17 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-06-02T17:42:17 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-06-02T17:45:38 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-06-02T17:48:44 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-06-02T17:54:54 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-06-02T17:56:25 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-06-02T18:17:22 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-06-02T18:18:08 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-06-02T18:30:57 fasterq-dump.2.9.6 sys: error unknown while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) spots read : 52,676,643 reads read : 105,353,286 reads written : 105,353,286 rm: cannot remove ‘[DSE]RR*’: No such file or directory rm: cannot remove ‘fastqDump_tmp*’: No such file or directory fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:18:49 52676643 reads; of these: 52676643 (100.00%) were paired; of these: 17571773 (33.36%) aligned concordantly 0 times 29119680 (55.28%) aligned concordantly exactly 1 time 5985190 (11.36%) aligned concordantly >1 times ---- 17571773 pairs aligned concordantly 0 times; of these: 166516 (0.95%) aligned discordantly 1 time ---- 17405257 pairs aligned 0 times concordantly or discordantly; of these: 34810514 mates make up the pairs; of these: 32821176 (94.29%) aligned 0 times 1525923 (4.38%) aligned exactly 1 time 463415 (1.33%) aligned >1 times 68.85% overall alignment rate Time searching: 01:18:49 Overall time: 01:18:49 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 32 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 10325473 / 35232072 = 0.2931 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Mon, 03 Jun 2019 05:15:06: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX127433/SRX127433.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX127433/SRX127433.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX127433/SRX127433.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX127433/SRX127433.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Mon, 03 Jun 2019 05:15:06: #1 read tag files... INFO @ Mon, 03 Jun 2019 05:15:06: #1 read treatment tags... INFO @ Mon, 03 Jun 2019 05:15:06: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX127433/SRX127433.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX127433/SRX127433.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX127433/SRX127433.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX127433/SRX127433.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Mon, 03 Jun 2019 05:15:06: #1 read tag files... INFO @ Mon, 03 Jun 2019 05:15:06: #1 read treatment tags... INFO @ Mon, 03 Jun 2019 05:15:06: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX127433/SRX127433.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX127433/SRX127433.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX127433/SRX127433.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX127433/SRX127433.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Mon, 03 Jun 2019 05:15:06: #1 read tag files... INFO @ Mon, 03 Jun 2019 05:15:06: #1 read treatment tags... INFO @ Mon, 03 Jun 2019 05:15:14: 1000000 INFO @ Mon, 03 Jun 2019 05:15:15: 1000000 INFO @ Mon, 03 Jun 2019 05:15:15: 1000000 INFO @ Mon, 03 Jun 2019 05:15:21: 2000000 INFO @ Mon, 03 Jun 2019 05:15:23: 2000000 INFO @ Mon, 03 Jun 2019 05:15:23: 2000000 INFO @ Mon, 03 Jun 2019 05:15:28: 3000000 INFO @ Mon, 03 Jun 2019 05:15:31: 3000000 INFO @ Mon, 03 Jun 2019 05:15:31: 3000000 INFO @ Mon, 03 Jun 2019 05:15:35: 4000000 INFO @ Mon, 03 Jun 2019 05:15:39: 4000000 INFO @ Mon, 03 Jun 2019 05:15:39: 4000000 INFO @ Mon, 03 Jun 2019 05:15:42: 5000000 INFO @ Mon, 03 Jun 2019 05:15:47: 5000000 INFO @ Mon, 03 Jun 2019 05:15:47: 5000000 INFO @ Mon, 03 Jun 2019 05:15:49: 6000000 INFO @ Mon, 03 Jun 2019 05:15:54: 6000000 INFO @ Mon, 03 Jun 2019 05:15:55: 6000000 INFO @ Mon, 03 Jun 2019 05:15:56: 7000000 INFO @ Mon, 03 Jun 2019 05:16:02: 7000000 INFO @ Mon, 03 Jun 2019 05:16:03: 7000000 INFO @ Mon, 03 Jun 2019 05:16:03: 8000000 INFO @ Mon, 03 Jun 2019 05:16:10: 9000000 INFO @ Mon, 03 Jun 2019 05:16:10: 8000000 INFO @ Mon, 03 Jun 2019 05:16:11: 8000000 INFO @ Mon, 03 Jun 2019 05:16:19: 9000000 INFO @ Mon, 03 Jun 2019 05:16:19: 10000000 INFO @ Mon, 03 Jun 2019 05:16:21: 9000000 INFO @ Mon, 03 Jun 2019 05:16:27: 10000000 INFO @ Mon, 03 Jun 2019 05:16:28: 11000000 INFO @ Mon, 03 Jun 2019 05:16:30: 10000000 INFO @ Mon, 03 Jun 2019 05:16:36: 11000000 INFO @ Mon, 03 Jun 2019 05:16:38: 12000000 INFO @ Mon, 03 Jun 2019 05:16:38: 11000000 INFO @ Mon, 03 Jun 2019 05:16:44: 12000000 INFO @ Mon, 03 Jun 2019 05:16:46: 13000000 INFO @ Mon, 03 Jun 2019 05:16:46: 12000000 INFO @ Mon, 03 Jun 2019 05:16:52: 13000000 INFO @ Mon, 03 Jun 2019 05:16:54: 13000000 INFO @ Mon, 03 Jun 2019 05:16:54: 14000000 INFO @ Mon, 03 Jun 2019 05:17:00: 14000000 INFO @ Mon, 03 Jun 2019 05:17:03: 14000000 INFO @ Mon, 03 Jun 2019 05:17:03: 15000000 INFO @ Mon, 03 Jun 2019 05:17:09: 15000000 INFO @ Mon, 03 Jun 2019 05:17:11: 15000000 INFO @ Mon, 03 Jun 2019 05:17:12: 16000000 INFO @ Mon, 03 Jun 2019 05:17:18: 16000000 INFO @ Mon, 03 Jun 2019 05:17:21: 16000000 INFO @ Mon, 03 Jun 2019 05:17:21: 17000000 INFO @ Mon, 03 Jun 2019 05:17:26: 17000000 INFO @ Mon, 03 Jun 2019 05:17:29: 17000000 INFO @ Mon, 03 Jun 2019 05:17:30: 18000000 INFO @ Mon, 03 Jun 2019 05:17:35: 18000000 INFO @ Mon, 03 Jun 2019 05:17:38: 18000000 INFO @ Mon, 03 Jun 2019 05:17:39: 19000000 INFO @ Mon, 03 Jun 2019 05:17:44: 19000000 INFO @ Mon, 03 Jun 2019 05:17:47: 19000000 INFO @ Mon, 03 Jun 2019 05:17:49: 20000000 INFO @ Mon, 03 Jun 2019 05:17:53: 20000000 INFO @ Mon, 03 Jun 2019 05:17:56: 20000000 INFO @ Mon, 03 Jun 2019 05:17:57: 21000000 INFO @ Mon, 03 Jun 2019 05:18:02: 21000000 INFO @ Mon, 03 Jun 2019 05:18:04: 22000000 INFO @ Mon, 03 Jun 2019 05:18:05: 21000000 INFO @ Mon, 03 Jun 2019 05:18:10: 22000000 INFO @ Mon, 03 Jun 2019 05:18:11: 23000000 INFO @ Mon, 03 Jun 2019 05:18:13: 22000000 INFO @ Mon, 03 Jun 2019 05:18:18: 24000000 INFO @ Mon, 03 Jun 2019 05:18:19: 23000000 INFO @ Mon, 03 Jun 2019 05:18:21: 23000000 INFO @ Mon, 03 Jun 2019 05:18:25: 25000000 INFO @ Mon, 03 Jun 2019 05:18:27: 24000000 INFO @ Mon, 03 Jun 2019 05:18:30: 24000000 INFO @ Mon, 03 Jun 2019 05:18:32: 26000000 INFO @ Mon, 03 Jun 2019 05:18:35: 25000000 INFO @ Mon, 03 Jun 2019 05:18:38: 25000000 INFO @ Mon, 03 Jun 2019 05:18:40: 27000000 INFO @ Mon, 03 Jun 2019 05:18:44: 26000000 INFO @ Mon, 03 Jun 2019 05:18:46: 26000000 INFO @ Mon, 03 Jun 2019 05:18:47: 28000000 INFO @ Mon, 03 Jun 2019 05:18:52: 27000000 INFO @ Mon, 03 Jun 2019 05:18:54: 29000000 INFO @ Mon, 03 Jun 2019 05:18:55: 27000000 INFO @ Mon, 03 Jun 2019 05:19:00: 28000000 INFO @ Mon, 03 Jun 2019 05:19:00: 30000000 INFO @ Mon, 03 Jun 2019 05:19:03: 28000000 INFO @ Mon, 03 Jun 2019 05:19:07: 31000000 INFO @ Mon, 03 Jun 2019 05:19:08: 29000000 INFO @ Mon, 03 Jun 2019 05:19:11: 29000000 INFO @ Mon, 03 Jun 2019 05:19:14: 32000000 INFO @ Mon, 03 Jun 2019 05:19:16: 30000000 INFO @ Mon, 03 Jun 2019 05:19:19: 30000000 INFO @ Mon, 03 Jun 2019 05:19:21: 33000000 INFO @ Mon, 03 Jun 2019 05:19:25: 31000000 INFO @ Mon, 03 Jun 2019 05:19:27: 31000000 INFO @ Mon, 03 Jun 2019 05:19:27: 34000000 INFO @ Mon, 03 Jun 2019 05:19:33: 32000000 INFO @ Mon, 03 Jun 2019 05:19:34: 35000000 INFO @ Mon, 03 Jun 2019 05:19:36: 32000000 INFO @ Mon, 03 Jun 2019 05:19:41: 36000000 INFO @ Mon, 03 Jun 2019 05:19:41: 33000000 INFO @ Mon, 03 Jun 2019 05:19:44: 33000000 INFO @ Mon, 03 Jun 2019 05:19:48: 37000000 INFO @ Mon, 03 Jun 2019 05:19:50: 34000000 INFO @ Mon, 03 Jun 2019 05:19:52: 34000000 INFO @ Mon, 03 Jun 2019 05:19:55: 38000000 INFO @ Mon, 03 Jun 2019 05:19:58: 35000000 INFO @ Mon, 03 Jun 2019 05:20:00: 35000000 INFO @ Mon, 03 Jun 2019 05:20:02: 39000000 INFO @ Mon, 03 Jun 2019 05:20:06: 36000000 INFO @ Mon, 03 Jun 2019 05:20:09: 36000000 INFO @ Mon, 03 Jun 2019 05:20:09: 40000000 INFO @ Mon, 03 Jun 2019 05:20:14: 37000000 INFO @ Mon, 03 Jun 2019 05:20:16: 41000000 INFO @ Mon, 03 Jun 2019 05:20:17: 37000000 INFO @ Mon, 03 Jun 2019 05:20:23: 38000000 INFO @ Mon, 03 Jun 2019 05:20:23: 42000000 INFO @ Mon, 03 Jun 2019 05:20:25: 38000000 INFO @ Mon, 03 Jun 2019 05:20:30: 43000000 INFO @ Mon, 03 Jun 2019 05:20:31: 39000000 INFO @ Mon, 03 Jun 2019 05:20:34: 39000000 INFO @ Mon, 03 Jun 2019 05:20:37: 44000000 INFO @ Mon, 03 Jun 2019 05:20:40: 40000000 INFO @ Mon, 03 Jun 2019 05:20:42: 40000000 INFO @ Mon, 03 Jun 2019 05:20:44: 45000000 INFO @ Mon, 03 Jun 2019 05:20:48: 41000000 INFO @ Mon, 03 Jun 2019 05:20:50: 46000000 INFO @ Mon, 03 Jun 2019 05:20:51: 41000000 INFO @ Mon, 03 Jun 2019 05:20:57: 47000000 INFO @ Mon, 03 Jun 2019 05:20:57: 42000000 INFO @ Mon, 03 Jun 2019 05:21:00: 42000000 INFO @ Mon, 03 Jun 2019 05:21:04: 48000000 INFO @ Mon, 03 Jun 2019 05:21:05: 43000000 INFO @ Mon, 03 Jun 2019 05:21:08: 43000000 INFO @ Mon, 03 Jun 2019 05:21:10: 49000000 INFO @ Mon, 03 Jun 2019 05:21:13: 44000000 INFO @ Mon, 03 Jun 2019 05:21:16: 44000000 INFO @ Mon, 03 Jun 2019 05:21:17: 50000000 INFO @ Mon, 03 Jun 2019 05:21:22: 45000000 INFO @ Mon, 03 Jun 2019 05:21:24: 51000000 INFO @ Mon, 03 Jun 2019 05:21:24: 45000000 INFO @ Mon, 03 Jun 2019 05:21:30: 46000000 INFO @ Mon, 03 Jun 2019 05:21:30: #1 tag size is determined as 51 bps INFO @ Mon, 03 Jun 2019 05:21:30: #1 tag size = 51 INFO @ Mon, 03 Jun 2019 05:21:30: #1 total tags in treatment: 24801562 INFO @ Mon, 03 Jun 2019 05:21:30: #1 user defined the maximum tags... INFO @ Mon, 03 Jun 2019 05:21:30: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Mon, 03 Jun 2019 05:21:31: #1 tags after filtering in treatment: 19655548 INFO @ Mon, 03 Jun 2019 05:21:31: #1 Redundant rate of treatment: 0.21 INFO @ Mon, 03 Jun 2019 05:21:31: #1 finished! INFO @ Mon, 03 Jun 2019 05:21:31: #2 Build Peak Model... INFO @ Mon, 03 Jun 2019 05:21:31: #2 looking for paired plus/minus strand peaks... INFO @ Mon, 03 Jun 2019 05:21:33: 46000000 INFO @ Mon, 03 Jun 2019 05:21:33: #2 number of paired peaks: 3016 INFO @ Mon, 03 Jun 2019 05:21:33: start model_add_line... INFO @ Mon, 03 Jun 2019 05:21:33: start X-correlation... INFO @ Mon, 03 Jun 2019 05:21:33: end of X-cor INFO @ Mon, 03 Jun 2019 05:21:33: #2 finished! INFO @ Mon, 03 Jun 2019 05:21:33: #2 predicted fragment length is 137 bps INFO @ Mon, 03 Jun 2019 05:21:33: #2 alternative fragment length(s) may be 137 bps INFO @ Mon, 03 Jun 2019 05:21:33: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX127433/SRX127433.10_model.r INFO @ Mon, 03 Jun 2019 05:21:33: #3 Call peaks... INFO @ Mon, 03 Jun 2019 05:21:33: #3 Pre-compute pvalue-qvalue table... INFO @ Mon, 03 Jun 2019 05:21:38: 47000000 INFO @ Mon, 03 Jun 2019 05:21:41: 47000000 INFO @ Mon, 03 Jun 2019 05:21:46: 48000000 INFO @ Mon, 03 Jun 2019 05:21:49: 48000000 INFO @ Mon, 03 Jun 2019 05:21:55: 49000000 INFO @ Mon, 03 Jun 2019 05:21:57: 49000000 INFO @ Mon, 03 Jun 2019 05:22:03: 50000000 INFO @ Mon, 03 Jun 2019 05:22:06: 50000000 INFO @ Mon, 03 Jun 2019 05:22:11: 51000000 INFO @ Mon, 03 Jun 2019 05:22:14: 51000000 INFO @ Mon, 03 Jun 2019 05:22:18: #1 tag size is determined as 51 bps INFO @ Mon, 03 Jun 2019 05:22:18: #1 tag size = 51 INFO @ Mon, 03 Jun 2019 05:22:18: #1 total tags in treatment: 24801562 INFO @ Mon, 03 Jun 2019 05:22:18: #1 user defined the maximum tags... INFO @ Mon, 03 Jun 2019 05:22:18: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Mon, 03 Jun 2019 05:22:19: #1 tags after filtering in treatment: 19655548 INFO @ Mon, 03 Jun 2019 05:22:19: #1 Redundant rate of treatment: 0.21 INFO @ Mon, 03 Jun 2019 05:22:19: #1 finished! INFO @ Mon, 03 Jun 2019 05:22:19: #2 Build Peak Model... INFO @ Mon, 03 Jun 2019 05:22:19: #2 looking for paired plus/minus strand peaks... INFO @ Mon, 03 Jun 2019 05:22:21: #1 tag size is determined as 51 bps INFO @ Mon, 03 Jun 2019 05:22:21: #1 tag size = 51 INFO @ Mon, 03 Jun 2019 05:22:21: #1 total tags in treatment: 24801562 INFO @ Mon, 03 Jun 2019 05:22:21: #1 user defined the maximum tags... INFO @ Mon, 03 Jun 2019 05:22:21: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Mon, 03 Jun 2019 05:22:21: #2 number of paired peaks: 3016 INFO @ Mon, 03 Jun 2019 05:22:21: start model_add_line... INFO @ Mon, 03 Jun 2019 05:22:21: #1 tags after filtering in treatment: 19655548 INFO @ Mon, 03 Jun 2019 05:22:21: #1 Redundant rate of treatment: 0.21 INFO @ Mon, 03 Jun 2019 05:22:21: #1 finished! INFO @ Mon, 03 Jun 2019 05:22:21: #2 Build Peak Model... INFO @ Mon, 03 Jun 2019 05:22:21: #2 looking for paired plus/minus strand peaks... INFO @ Mon, 03 Jun 2019 05:22:21: start X-correlation... INFO @ Mon, 03 Jun 2019 05:22:21: end of X-cor INFO @ Mon, 03 Jun 2019 05:22:21: #2 finished! INFO @ Mon, 03 Jun 2019 05:22:21: #2 predicted fragment length is 137 bps INFO @ Mon, 03 Jun 2019 05:22:21: #2 alternative fragment length(s) may be 137 bps INFO @ Mon, 03 Jun 2019 05:22:21: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX127433/SRX127433.20_model.r INFO @ Mon, 03 Jun 2019 05:22:21: #3 Call peaks... INFO @ Mon, 03 Jun 2019 05:22:21: #3 Pre-compute pvalue-qvalue table... INFO @ Mon, 03 Jun 2019 05:22:23: #2 number of paired peaks: 3016 INFO @ Mon, 03 Jun 2019 05:22:23: start model_add_line... INFO @ Mon, 03 Jun 2019 05:22:24: start X-correlation... INFO @ Mon, 03 Jun 2019 05:22:24: end of X-cor INFO @ Mon, 03 Jun 2019 05:22:24: #2 finished! INFO @ Mon, 03 Jun 2019 05:22:24: #2 predicted fragment length is 137 bps INFO @ Mon, 03 Jun 2019 05:22:24: #2 alternative fragment length(s) may be 137 bps INFO @ Mon, 03 Jun 2019 05:22:24: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX127433/SRX127433.05_model.r INFO @ Mon, 03 Jun 2019 05:22:24: #3 Call peaks... INFO @ Mon, 03 Jun 2019 05:22:24: #3 Pre-compute pvalue-qvalue table... INFO @ Mon, 03 Jun 2019 05:22:34: #3 Call peaks for each chromosome... INFO @ Mon, 03 Jun 2019 05:22:59: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX127433/SRX127433.10_peaks.xls INFO @ Mon, 03 Jun 2019 05:22:59: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX127433/SRX127433.10_peaks.narrowPeak INFO @ Mon, 03 Jun 2019 05:22:59: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX127433/SRX127433.10_summits.bed INFO @ Mon, 03 Jun 2019 05:22:59: Done! pass1 - making usageList (15 chroms): 4 millis pass2 - checking and writing primary data (6141 records, 4 fields): 13 millis CompletedMACS2peakCalling INFO @ Mon, 03 Jun 2019 05:23:21: #3 Call peaks for each chromosome... INFO @ Mon, 03 Jun 2019 05:23:24: #3 Call peaks for each chromosome... INFO @ Mon, 03 Jun 2019 05:23:48: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX127433/SRX127433.20_peaks.xls INFO @ Mon, 03 Jun 2019 05:23:48: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX127433/SRX127433.20_peaks.narrowPeak INFO @ Mon, 03 Jun 2019 05:23:48: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX127433/SRX127433.20_summits.bed INFO @ Mon, 03 Jun 2019 05:23:48: Done! pass1 - making usageList (14 chroms): 3 millis pass2 - checking and writing primary data (3880 records, 4 fields): 11 millis CompletedMACS2peakCalling INFO @ Mon, 03 Jun 2019 05:23:50: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX127433/SRX127433.05_peaks.xls INFO @ Mon, 03 Jun 2019 05:23:50: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX127433/SRX127433.05_peaks.narrowPeak INFO @ Mon, 03 Jun 2019 05:23:51: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX127433/SRX127433.05_summits.bed INFO @ Mon, 03 Jun 2019 05:23:51: Done! pass1 - making usageList (15 chroms): 2 millis pass2 - checking and writing primary data (9005 records, 4 fields): 19 millis CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。