Job ID = 16436276 SRX = SRX12178898 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2022-08-02T02:17:44 prefetch.2.10.7: 1) Downloading 'SRR15888016'... 2022-08-02T02:17:44 prefetch.2.10.7: Downloading via HTTPS... 2022-08-02T02:19:09 prefetch.2.10.7: HTTPS download succeed 2022-08-02T02:19:09 prefetch.2.10.7: 1) 'SRR15888016' was downloaded successfully 2022-08-02T02:19:10 prefetch.2.10.7: 'SRR15888016' has 0 unresolved dependencies Read 30664396 spots for SRR15888016/SRR15888016.sra Written 30664396 spots for SRR15888016/SRR15888016.sra fastq に変換しました。 bowtie でマッピング中... Your job 16436823 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:26:24 30664396 reads; of these: 30664396 (100.00%) were paired; of these: 10334818 (33.70%) aligned concordantly 0 times 17664602 (57.61%) aligned concordantly exactly 1 time 2664976 (8.69%) aligned concordantly >1 times ---- 10334818 pairs aligned concordantly 0 times; of these: 4038515 (39.08%) aligned discordantly 1 time ---- 6296303 pairs aligned 0 times concordantly or discordantly; of these: 12592606 mates make up the pairs; of these: 8205059 (65.16%) aligned 0 times 3303966 (26.24%) aligned exactly 1 time 1083581 (8.60%) aligned >1 times 86.62% overall alignment rate Time searching: 00:26:25 Overall time: 00:26:25 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 24 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 3855299 / 24278076 = 0.1588 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 12:02:20: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12178898/SRX12178898.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12178898/SRX12178898.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12178898/SRX12178898.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12178898/SRX12178898.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 12:02:20: #1 read tag files... INFO @ Tue, 02 Aug 2022 12:02:20: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 12:02:25: 1000000 INFO @ Tue, 02 Aug 2022 12:02:31: 2000000 INFO @ Tue, 02 Aug 2022 12:02:37: 3000000 INFO @ Tue, 02 Aug 2022 12:02:42: 4000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 12:02:47: 5000000 INFO @ Tue, 02 Aug 2022 12:02:49: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12178898/SRX12178898.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12178898/SRX12178898.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12178898/SRX12178898.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12178898/SRX12178898.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 12:02:49: #1 read tag files... INFO @ Tue, 02 Aug 2022 12:02:49: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 12:02:53: 6000000 INFO @ Tue, 02 Aug 2022 12:02:54: 1000000 INFO @ Tue, 02 Aug 2022 12:02:59: 7000000 INFO @ Tue, 02 Aug 2022 12:03:00: 2000000 INFO @ Tue, 02 Aug 2022 12:03:04: 8000000 INFO @ Tue, 02 Aug 2022 12:03:06: 3000000 INFO @ Tue, 02 Aug 2022 12:03:10: 9000000 INFO @ Tue, 02 Aug 2022 12:03:11: 4000000 INFO @ Tue, 02 Aug 2022 12:03:15: 10000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 12:03:17: 5000000 INFO @ Tue, 02 Aug 2022 12:03:19: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12178898/SRX12178898.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12178898/SRX12178898.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12178898/SRX12178898.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12178898/SRX12178898.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 12:03:19: #1 read tag files... INFO @ Tue, 02 Aug 2022 12:03:19: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 12:03:21: 11000000 INFO @ Tue, 02 Aug 2022 12:03:22: 6000000 INFO @ Tue, 02 Aug 2022 12:03:24: 1000000 INFO @ Tue, 02 Aug 2022 12:03:26: 12000000 INFO @ Tue, 02 Aug 2022 12:03:28: 7000000 INFO @ Tue, 02 Aug 2022 12:03:29: 2000000 INFO @ Tue, 02 Aug 2022 12:03:31: 13000000 INFO @ Tue, 02 Aug 2022 12:03:33: 8000000 INFO @ Tue, 02 Aug 2022 12:03:35: 3000000 INFO @ Tue, 02 Aug 2022 12:03:37: 14000000 INFO @ Tue, 02 Aug 2022 12:03:38: 9000000 INFO @ Tue, 02 Aug 2022 12:03:39: 4000000 INFO @ Tue, 02 Aug 2022 12:03:43: 15000000 INFO @ Tue, 02 Aug 2022 12:03:44: 10000000 INFO @ Tue, 02 Aug 2022 12:03:45: 5000000 INFO @ Tue, 02 Aug 2022 12:03:48: 16000000 INFO @ Tue, 02 Aug 2022 12:03:50: 11000000 INFO @ Tue, 02 Aug 2022 12:03:50: 6000000 INFO @ Tue, 02 Aug 2022 12:03:54: 17000000 INFO @ Tue, 02 Aug 2022 12:03:55: 7000000 INFO @ Tue, 02 Aug 2022 12:03:55: 12000000 INFO @ Tue, 02 Aug 2022 12:04:00: 18000000 INFO @ Tue, 02 Aug 2022 12:04:00: 8000000 INFO @ Tue, 02 Aug 2022 12:04:01: 13000000 INFO @ Tue, 02 Aug 2022 12:04:05: 9000000 INFO @ Tue, 02 Aug 2022 12:04:05: 19000000 INFO @ Tue, 02 Aug 2022 12:04:06: 14000000 INFO @ Tue, 02 Aug 2022 12:04:10: 10000000 INFO @ Tue, 02 Aug 2022 12:04:11: 20000000 INFO @ Tue, 02 Aug 2022 12:04:12: 15000000 INFO @ Tue, 02 Aug 2022 12:04:15: 11000000 INFO @ Tue, 02 Aug 2022 12:04:17: 21000000 INFO @ Tue, 02 Aug 2022 12:04:17: 16000000 INFO @ Tue, 02 Aug 2022 12:04:20: 12000000 INFO @ Tue, 02 Aug 2022 12:04:22: 22000000 INFO @ Tue, 02 Aug 2022 12:04:23: 17000000 INFO @ Tue, 02 Aug 2022 12:04:25: 13000000 INFO @ Tue, 02 Aug 2022 12:04:28: 18000000 INFO @ Tue, 02 Aug 2022 12:04:28: 23000000 INFO @ Tue, 02 Aug 2022 12:04:30: 14000000 INFO @ Tue, 02 Aug 2022 12:04:33: 19000000 INFO @ Tue, 02 Aug 2022 12:04:34: 24000000 INFO @ Tue, 02 Aug 2022 12:04:35: 15000000 INFO @ Tue, 02 Aug 2022 12:04:38: 20000000 INFO @ Tue, 02 Aug 2022 12:04:39: 25000000 INFO @ Tue, 02 Aug 2022 12:04:39: 16000000 INFO @ Tue, 02 Aug 2022 12:04:43: 21000000 INFO @ Tue, 02 Aug 2022 12:04:44: 26000000 INFO @ Tue, 02 Aug 2022 12:04:44: 17000000 INFO @ Tue, 02 Aug 2022 12:04:48: 22000000 INFO @ Tue, 02 Aug 2022 12:04:49: 18000000 INFO @ Tue, 02 Aug 2022 12:04:49: 27000000 INFO @ Tue, 02 Aug 2022 12:04:53: 23000000 INFO @ Tue, 02 Aug 2022 12:04:54: 19000000 INFO @ Tue, 02 Aug 2022 12:04:55: 28000000 INFO @ Tue, 02 Aug 2022 12:04:58: 24000000 INFO @ Tue, 02 Aug 2022 12:04:59: 20000000 INFO @ Tue, 02 Aug 2022 12:05:00: 29000000 INFO @ Tue, 02 Aug 2022 12:05:03: 25000000 INFO @ Tue, 02 Aug 2022 12:05:04: 21000000 INFO @ Tue, 02 Aug 2022 12:05:05: 30000000 INFO @ Tue, 02 Aug 2022 12:05:08: 26000000 INFO @ Tue, 02 Aug 2022 12:05:09: 22000000 INFO @ Tue, 02 Aug 2022 12:05:10: 31000000 INFO @ Tue, 02 Aug 2022 12:05:13: 27000000 INFO @ Tue, 02 Aug 2022 12:05:13: 23000000 INFO @ Tue, 02 Aug 2022 12:05:15: 32000000 INFO @ Tue, 02 Aug 2022 12:05:18: 28000000 INFO @ Tue, 02 Aug 2022 12:05:18: 24000000 INFO @ Tue, 02 Aug 2022 12:05:21: 33000000 INFO @ Tue, 02 Aug 2022 12:05:23: 29000000 INFO @ Tue, 02 Aug 2022 12:05:23: 25000000 INFO @ Tue, 02 Aug 2022 12:05:26: 34000000 INFO @ Tue, 02 Aug 2022 12:05:28: 30000000 INFO @ Tue, 02 Aug 2022 12:05:28: 26000000 INFO @ Tue, 02 Aug 2022 12:05:31: 35000000 INFO @ Tue, 02 Aug 2022 12:05:33: 31000000 INFO @ Tue, 02 Aug 2022 12:05:33: 27000000 INFO @ Tue, 02 Aug 2022 12:05:36: 36000000 INFO @ Tue, 02 Aug 2022 12:05:37: 32000000 INFO @ Tue, 02 Aug 2022 12:05:38: 28000000 INFO @ Tue, 02 Aug 2022 12:05:42: 37000000 INFO @ Tue, 02 Aug 2022 12:05:42: 33000000 INFO @ Tue, 02 Aug 2022 12:05:42: 29000000 INFO @ Tue, 02 Aug 2022 12:05:47: 34000000 INFO @ Tue, 02 Aug 2022 12:05:47: 38000000 INFO @ Tue, 02 Aug 2022 12:05:47: 30000000 INFO @ Tue, 02 Aug 2022 12:05:51: 35000000 INFO @ Tue, 02 Aug 2022 12:05:52: 31000000 INFO @ Tue, 02 Aug 2022 12:05:52: 39000000 INFO @ Tue, 02 Aug 2022 12:05:56: 36000000 INFO @ Tue, 02 Aug 2022 12:05:57: 32000000 INFO @ Tue, 02 Aug 2022 12:05:58: 40000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 02 Aug 2022 12:06:01: 37000000 INFO @ Tue, 02 Aug 2022 12:06:01: 33000000 INFO @ Tue, 02 Aug 2022 12:06:03: 41000000 INFO @ Tue, 02 Aug 2022 12:06:06: 38000000 INFO @ Tue, 02 Aug 2022 12:06:06: 34000000 INFO @ Tue, 02 Aug 2022 12:06:09: 42000000 INFO @ Tue, 02 Aug 2022 12:06:11: 39000000 INFO @ Tue, 02 Aug 2022 12:06:11: 35000000 INFO @ Tue, 02 Aug 2022 12:06:14: 43000000 INFO @ Tue, 02 Aug 2022 12:06:15: 40000000 INFO @ Tue, 02 Aug 2022 12:06:16: 36000000 INFO @ Tue, 02 Aug 2022 12:06:19: 44000000 INFO @ Tue, 02 Aug 2022 12:06:20: 41000000 INFO @ Tue, 02 Aug 2022 12:06:21: 37000000 INFO @ Tue, 02 Aug 2022 12:06:24: 45000000 INFO @ Tue, 02 Aug 2022 12:06:24: 42000000 INFO @ Tue, 02 Aug 2022 12:06:25: 38000000 INFO @ Tue, 02 Aug 2022 12:06:27: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 12:06:27: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 12:06:27: #1 total tags in treatment: 16930395 INFO @ Tue, 02 Aug 2022 12:06:27: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 12:06:27: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 12:06:27: #1 tags after filtering in treatment: 12037324 INFO @ Tue, 02 Aug 2022 12:06:27: #1 Redundant rate of treatment: 0.29 INFO @ Tue, 02 Aug 2022 12:06:27: #1 finished! INFO @ Tue, 02 Aug 2022 12:06:27: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 12:06:27: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 12:06:28: #2 number of paired peaks: 1749 INFO @ Tue, 02 Aug 2022 12:06:28: start model_add_line... INFO @ Tue, 02 Aug 2022 12:06:28: start X-correlation... INFO @ Tue, 02 Aug 2022 12:06:28: end of X-cor INFO @ Tue, 02 Aug 2022 12:06:28: #2 finished! INFO @ Tue, 02 Aug 2022 12:06:28: #2 predicted fragment length is 64 bps INFO @ Tue, 02 Aug 2022 12:06:28: #2 alternative fragment length(s) may be 64 bps INFO @ Tue, 02 Aug 2022 12:06:28: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12178898/SRX12178898.05_model.r WARNING @ Tue, 02 Aug 2022 12:06:28: #2 Since the d (64) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 12:06:28: #2 You may need to consider one of the other alternative d(s): 64 WARNING @ Tue, 02 Aug 2022 12:06:28: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 12:06:28: #3 Call peaks... INFO @ Tue, 02 Aug 2022 12:06:28: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 12:06:29: 43000000 INFO @ Tue, 02 Aug 2022 12:06:30: 39000000 INFO @ Tue, 02 Aug 2022 12:06:34: 44000000 INFO @ Tue, 02 Aug 2022 12:06:34: 40000000 INFO @ Tue, 02 Aug 2022 12:06:38: 45000000 INFO @ Tue, 02 Aug 2022 12:06:39: 41000000 INFO @ Tue, 02 Aug 2022 12:06:40: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 12:06:40: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 12:06:40: #1 total tags in treatment: 16930395 INFO @ Tue, 02 Aug 2022 12:06:40: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 12:06:40: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 12:06:41: #1 tags after filtering in treatment: 12037324 INFO @ Tue, 02 Aug 2022 12:06:41: #1 Redundant rate of treatment: 0.29 INFO @ Tue, 02 Aug 2022 12:06:41: #1 finished! INFO @ Tue, 02 Aug 2022 12:06:41: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 12:06:41: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 12:06:42: #2 number of paired peaks: 1749 INFO @ Tue, 02 Aug 2022 12:06:42: start model_add_line... INFO @ Tue, 02 Aug 2022 12:06:42: start X-correlation... INFO @ Tue, 02 Aug 2022 12:06:42: end of X-cor INFO @ Tue, 02 Aug 2022 12:06:42: #2 finished! INFO @ Tue, 02 Aug 2022 12:06:42: #2 predicted fragment length is 64 bps INFO @ Tue, 02 Aug 2022 12:06:42: #2 alternative fragment length(s) may be 64 bps INFO @ Tue, 02 Aug 2022 12:06:42: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12178898/SRX12178898.10_model.r WARNING @ Tue, 02 Aug 2022 12:06:42: #2 Since the d (64) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 12:06:42: #2 You may need to consider one of the other alternative d(s): 64 WARNING @ Tue, 02 Aug 2022 12:06:42: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 12:06:42: #3 Call peaks... INFO @ Tue, 02 Aug 2022 12:06:42: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 12:06:43: 42000000 INFO @ Tue, 02 Aug 2022 12:06:48: 43000000 INFO @ Tue, 02 Aug 2022 12:06:52: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 12:06:52: 44000000 INFO @ Tue, 02 Aug 2022 12:06:57: 45000000 INFO @ Tue, 02 Aug 2022 12:06:59: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 12:06:59: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 12:06:59: #1 total tags in treatment: 16930395 INFO @ Tue, 02 Aug 2022 12:06:59: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 12:06:59: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) BigWig に変換しました。 INFO @ Tue, 02 Aug 2022 12:06:59: #1 tags after filtering in treatment: 12037324 INFO @ Tue, 02 Aug 2022 12:06:59: #1 Redundant rate of treatment: 0.29 INFO @ Tue, 02 Aug 2022 12:06:59: #1 finished! INFO @ Tue, 02 Aug 2022 12:06:59: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 12:06:59: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 12:07:00: #2 number of paired peaks: 1749 INFO @ Tue, 02 Aug 2022 12:07:00: start model_add_line... INFO @ Tue, 02 Aug 2022 12:07:00: start X-correlation... INFO @ Tue, 02 Aug 2022 12:07:00: end of X-cor INFO @ Tue, 02 Aug 2022 12:07:00: #2 finished! INFO @ Tue, 02 Aug 2022 12:07:00: #2 predicted fragment length is 64 bps INFO @ Tue, 02 Aug 2022 12:07:00: #2 alternative fragment length(s) may be 64 bps INFO @ Tue, 02 Aug 2022 12:07:00: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12178898/SRX12178898.20_model.r WARNING @ Tue, 02 Aug 2022 12:07:00: #2 Since the d (64) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 12:07:00: #2 You may need to consider one of the other alternative d(s): 64 WARNING @ Tue, 02 Aug 2022 12:07:00: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 12:07:00: #3 Call peaks... INFO @ Tue, 02 Aug 2022 12:07:00: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 12:07:06: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12178898/SRX12178898.05_peaks.xls INFO @ Tue, 02 Aug 2022 12:07:06: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12178898/SRX12178898.05_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 12:07:06: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12178898/SRX12178898.05_summits.bed INFO @ Tue, 02 Aug 2022 12:07:06: Done! INFO @ Tue, 02 Aug 2022 12:07:06: #3 Call peaks for each chromosome... pass1 - making usageList (14 chroms): 3 millis pass2 - checking and writing primary data (16683 records, 4 fields): 35 millis CompletedMACS2peakCalling INFO @ Tue, 02 Aug 2022 12:07:19: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12178898/SRX12178898.10_peaks.xls INFO @ Tue, 02 Aug 2022 12:07:19: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12178898/SRX12178898.10_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 12:07:19: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12178898/SRX12178898.10_summits.bed INFO @ Tue, 02 Aug 2022 12:07:19: Done! pass1 - making usageList (14 chroms): 6 millis pass2 - checking and writing primary data (8450 records, 4 fields): 229 millis CompletedMACS2peakCalling INFO @ Tue, 02 Aug 2022 12:07:24: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 12:07:37: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12178898/SRX12178898.20_peaks.xls INFO @ Tue, 02 Aug 2022 12:07:37: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12178898/SRX12178898.20_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 12:07:37: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12178898/SRX12178898.20_summits.bed INFO @ Tue, 02 Aug 2022 12:07:37: Done! pass1 - making usageList (12 chroms): 1 millis pass2 - checking and writing primary data (1453 records, 4 fields): 70 millis CompletedMACS2peakCalling