Job ID = 16436272 SRX = SRX12178897 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2022-08-02T02:16:44 prefetch.2.10.7: 1) Downloading 'SRR15888017'... 2022-08-02T02:16:44 prefetch.2.10.7: Downloading via HTTPS... 2022-08-02T02:19:05 prefetch.2.10.7: HTTPS download succeed 2022-08-02T02:19:05 prefetch.2.10.7: 1) 'SRR15888017' was downloaded successfully 2022-08-02T02:19:05 prefetch.2.10.7: 'SRR15888017' has 0 unresolved dependencies Read 48045975 spots for SRR15888017/SRR15888017.sra Written 48045975 spots for SRR15888017/SRR15888017.sra fastq に変換しました。 bowtie でマッピング中... Your job 16437135 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:01 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:46:23 48045975 reads; of these: 48045975 (100.00%) were paired; of these: 16960723 (35.30%) aligned concordantly 0 times 26467482 (55.09%) aligned concordantly exactly 1 time 4617770 (9.61%) aligned concordantly >1 times ---- 16960723 pairs aligned concordantly 0 times; of these: 6859608 (40.44%) aligned discordantly 1 time ---- 10101115 pairs aligned 0 times concordantly or discordantly; of these: 20202230 mates make up the pairs; of these: 11497067 (56.91%) aligned 0 times 6350085 (31.43%) aligned exactly 1 time 2355078 (11.66%) aligned >1 times 88.04% overall alignment rate Time searching: 00:46:24 Overall time: 00:46:24 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 36 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 6593432 / 37847826 = 0.1742 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 12:29:20: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12178897/SRX12178897.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12178897/SRX12178897.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12178897/SRX12178897.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12178897/SRX12178897.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 12:29:20: #1 read tag files... INFO @ Tue, 02 Aug 2022 12:29:20: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 12:29:25: 1000000 INFO @ Tue, 02 Aug 2022 12:29:30: 2000000 INFO @ Tue, 02 Aug 2022 12:29:35: 3000000 INFO @ Tue, 02 Aug 2022 12:29:40: 4000000 INFO @ Tue, 02 Aug 2022 12:29:45: 5000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 12:29:50: 6000000 INFO @ Tue, 02 Aug 2022 12:29:50: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12178897/SRX12178897.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12178897/SRX12178897.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12178897/SRX12178897.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12178897/SRX12178897.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 12:29:50: #1 read tag files... INFO @ Tue, 02 Aug 2022 12:29:50: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 12:29:55: 7000000 INFO @ Tue, 02 Aug 2022 12:29:55: 1000000 INFO @ Tue, 02 Aug 2022 12:29:59: 8000000 INFO @ Tue, 02 Aug 2022 12:30:00: 2000000 INFO @ Tue, 02 Aug 2022 12:30:04: 9000000 INFO @ Tue, 02 Aug 2022 12:30:04: 3000000 INFO @ Tue, 02 Aug 2022 12:30:09: 4000000 INFO @ Tue, 02 Aug 2022 12:30:09: 10000000 INFO @ Tue, 02 Aug 2022 12:30:13: 5000000 INFO @ Tue, 02 Aug 2022 12:30:14: 11000000 INFO @ Tue, 02 Aug 2022 12:30:18: 6000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 12:30:19: 12000000 INFO @ Tue, 02 Aug 2022 12:30:20: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12178897/SRX12178897.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12178897/SRX12178897.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12178897/SRX12178897.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12178897/SRX12178897.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 12:30:20: #1 read tag files... INFO @ Tue, 02 Aug 2022 12:30:20: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 12:30:22: 7000000 INFO @ Tue, 02 Aug 2022 12:30:24: 13000000 INFO @ Tue, 02 Aug 2022 12:30:25: 1000000 INFO @ Tue, 02 Aug 2022 12:30:27: 8000000 INFO @ Tue, 02 Aug 2022 12:30:29: 14000000 INFO @ Tue, 02 Aug 2022 12:30:30: 2000000 INFO @ Tue, 02 Aug 2022 12:30:31: 9000000 INFO @ Tue, 02 Aug 2022 12:30:34: 15000000 INFO @ Tue, 02 Aug 2022 12:30:35: 3000000 INFO @ Tue, 02 Aug 2022 12:30:36: 10000000 INFO @ Tue, 02 Aug 2022 12:30:39: 16000000 INFO @ Tue, 02 Aug 2022 12:30:40: 11000000 INFO @ Tue, 02 Aug 2022 12:30:40: 4000000 INFO @ Tue, 02 Aug 2022 12:30:44: 17000000 INFO @ Tue, 02 Aug 2022 12:30:45: 12000000 INFO @ Tue, 02 Aug 2022 12:30:46: 5000000 INFO @ Tue, 02 Aug 2022 12:30:49: 18000000 INFO @ Tue, 02 Aug 2022 12:30:49: 13000000 INFO @ Tue, 02 Aug 2022 12:30:51: 6000000 INFO @ Tue, 02 Aug 2022 12:30:54: 14000000 INFO @ Tue, 02 Aug 2022 12:30:54: 19000000 INFO @ Tue, 02 Aug 2022 12:30:56: 7000000 INFO @ Tue, 02 Aug 2022 12:30:58: 15000000 INFO @ Tue, 02 Aug 2022 12:30:59: 20000000 INFO @ Tue, 02 Aug 2022 12:31:01: 8000000 INFO @ Tue, 02 Aug 2022 12:31:03: 16000000 INFO @ Tue, 02 Aug 2022 12:31:04: 21000000 INFO @ Tue, 02 Aug 2022 12:31:06: 9000000 INFO @ Tue, 02 Aug 2022 12:31:07: 17000000 INFO @ Tue, 02 Aug 2022 12:31:09: 22000000 INFO @ Tue, 02 Aug 2022 12:31:11: 18000000 INFO @ Tue, 02 Aug 2022 12:31:11: 10000000 INFO @ Tue, 02 Aug 2022 12:31:14: 23000000 INFO @ Tue, 02 Aug 2022 12:31:16: 19000000 INFO @ Tue, 02 Aug 2022 12:31:17: 11000000 INFO @ Tue, 02 Aug 2022 12:31:18: 24000000 INFO @ Tue, 02 Aug 2022 12:31:21: 20000000 INFO @ Tue, 02 Aug 2022 12:31:22: 12000000 INFO @ Tue, 02 Aug 2022 12:31:23: 25000000 INFO @ Tue, 02 Aug 2022 12:31:25: 21000000 INFO @ Tue, 02 Aug 2022 12:31:27: 13000000 INFO @ Tue, 02 Aug 2022 12:31:29: 26000000 INFO @ Tue, 02 Aug 2022 12:31:29: 22000000 INFO @ Tue, 02 Aug 2022 12:31:32: 14000000 INFO @ Tue, 02 Aug 2022 12:31:34: 27000000 INFO @ Tue, 02 Aug 2022 12:31:34: 23000000 INFO @ Tue, 02 Aug 2022 12:31:37: 15000000 INFO @ Tue, 02 Aug 2022 12:31:38: 24000000 INFO @ Tue, 02 Aug 2022 12:31:39: 28000000 INFO @ Tue, 02 Aug 2022 12:31:42: 16000000 INFO @ Tue, 02 Aug 2022 12:31:43: 25000000 INFO @ Tue, 02 Aug 2022 12:31:44: 29000000 INFO @ Tue, 02 Aug 2022 12:31:47: 26000000 INFO @ Tue, 02 Aug 2022 12:31:48: 17000000 INFO @ Tue, 02 Aug 2022 12:31:49: 30000000 INFO @ Tue, 02 Aug 2022 12:31:52: 27000000 INFO @ Tue, 02 Aug 2022 12:31:53: 18000000 INFO @ Tue, 02 Aug 2022 12:31:53: 31000000 INFO @ Tue, 02 Aug 2022 12:31:57: 28000000 INFO @ Tue, 02 Aug 2022 12:31:58: 32000000 INFO @ Tue, 02 Aug 2022 12:31:58: 19000000 INFO @ Tue, 02 Aug 2022 12:32:01: 29000000 INFO @ Tue, 02 Aug 2022 12:32:03: 33000000 INFO @ Tue, 02 Aug 2022 12:32:04: 20000000 INFO @ Tue, 02 Aug 2022 12:32:06: 30000000 INFO @ Tue, 02 Aug 2022 12:32:08: 34000000 INFO @ Tue, 02 Aug 2022 12:32:09: 21000000 INFO @ Tue, 02 Aug 2022 12:32:11: 31000000 INFO @ Tue, 02 Aug 2022 12:32:12: 35000000 INFO @ Tue, 02 Aug 2022 12:32:14: 22000000 INFO @ Tue, 02 Aug 2022 12:32:15: 32000000 INFO @ Tue, 02 Aug 2022 12:32:17: 36000000 INFO @ Tue, 02 Aug 2022 12:32:19: 23000000 INFO @ Tue, 02 Aug 2022 12:32:20: 33000000 INFO @ Tue, 02 Aug 2022 12:32:22: 37000000 INFO @ Tue, 02 Aug 2022 12:32:25: 34000000 INFO @ Tue, 02 Aug 2022 12:32:25: 24000000 INFO @ Tue, 02 Aug 2022 12:32:26: 38000000 INFO @ Tue, 02 Aug 2022 12:32:29: 35000000 INFO @ Tue, 02 Aug 2022 12:32:30: 25000000 INFO @ Tue, 02 Aug 2022 12:32:31: 39000000 INFO @ Tue, 02 Aug 2022 12:32:34: 36000000 INFO @ Tue, 02 Aug 2022 12:32:35: 26000000 INFO @ Tue, 02 Aug 2022 12:32:36: 40000000 INFO @ Tue, 02 Aug 2022 12:32:39: 37000000 INFO @ Tue, 02 Aug 2022 12:32:40: 41000000 INFO @ Tue, 02 Aug 2022 12:32:41: 27000000 INFO @ Tue, 02 Aug 2022 12:32:43: 38000000 INFO @ Tue, 02 Aug 2022 12:32:45: 42000000 INFO @ Tue, 02 Aug 2022 12:32:46: 28000000 INFO @ Tue, 02 Aug 2022 12:32:48: 39000000 INFO @ Tue, 02 Aug 2022 12:32:50: 43000000 INFO @ Tue, 02 Aug 2022 12:32:51: 29000000 INFO @ Tue, 02 Aug 2022 12:32:53: 40000000 INFO @ Tue, 02 Aug 2022 12:32:54: 44000000 INFO @ Tue, 02 Aug 2022 12:32:56: 30000000 INFO @ Tue, 02 Aug 2022 12:32:57: 41000000 INFO @ Tue, 02 Aug 2022 12:32:59: 45000000 INFO @ Tue, 02 Aug 2022 12:33:00: 31000000 INFO @ Tue, 02 Aug 2022 12:33:02: 42000000 INFO @ Tue, 02 Aug 2022 12:33:04: 46000000 INFO @ Tue, 02 Aug 2022 12:33:05: 32000000 INFO @ Tue, 02 Aug 2022 12:33:07: 43000000 INFO @ Tue, 02 Aug 2022 12:33:09: 47000000 INFO @ Tue, 02 Aug 2022 12:33:10: 33000000 INFO @ Tue, 02 Aug 2022 12:33:11: 44000000 INFO @ Tue, 02 Aug 2022 12:33:13: 48000000 INFO @ Tue, 02 Aug 2022 12:33:15: 34000000 INFO @ Tue, 02 Aug 2022 12:33:16: 45000000 INFO @ Tue, 02 Aug 2022 12:33:18: 49000000 INFO @ Tue, 02 Aug 2022 12:33:19: 35000000 INFO @ Tue, 02 Aug 2022 12:33:21: 46000000 INFO @ Tue, 02 Aug 2022 12:33:23: 50000000 INFO @ Tue, 02 Aug 2022 12:33:24: 36000000 INFO @ Tue, 02 Aug 2022 12:33:25: 47000000 INFO @ Tue, 02 Aug 2022 12:33:28: 51000000 INFO @ Tue, 02 Aug 2022 12:33:29: 37000000 INFO @ Tue, 02 Aug 2022 12:33:30: 48000000 INFO @ Tue, 02 Aug 2022 12:33:33: 52000000 INFO @ Tue, 02 Aug 2022 12:33:33: 38000000 INFO @ Tue, 02 Aug 2022 12:33:35: 49000000 INFO @ Tue, 02 Aug 2022 12:33:37: 53000000 INFO @ Tue, 02 Aug 2022 12:33:38: 39000000 INFO @ Tue, 02 Aug 2022 12:33:40: 50000000 INFO @ Tue, 02 Aug 2022 12:33:43: 54000000 INFO @ Tue, 02 Aug 2022 12:33:43: 40000000 INFO @ Tue, 02 Aug 2022 12:33:45: 51000000 INFO @ Tue, 02 Aug 2022 12:33:47: 55000000 INFO @ Tue, 02 Aug 2022 12:33:48: 41000000 INFO @ Tue, 02 Aug 2022 12:33:50: 52000000 INFO @ Tue, 02 Aug 2022 12:33:52: 56000000 INFO @ Tue, 02 Aug 2022 12:33:52: 42000000 INFO @ Tue, 02 Aug 2022 12:33:54: 53000000 INFO @ Tue, 02 Aug 2022 12:33:57: 57000000 INFO @ Tue, 02 Aug 2022 12:33:57: 43000000 INFO @ Tue, 02 Aug 2022 12:33:59: 54000000 INFO @ Tue, 02 Aug 2022 12:34:01: 58000000 INFO @ Tue, 02 Aug 2022 12:34:02: 44000000 INFO @ Tue, 02 Aug 2022 12:34:04: 55000000 INFO @ Tue, 02 Aug 2022 12:34:06: 59000000 INFO @ Tue, 02 Aug 2022 12:34:06: 45000000 INFO @ Tue, 02 Aug 2022 12:34:09: 56000000 INFO @ Tue, 02 Aug 2022 12:34:11: 60000000 INFO @ Tue, 02 Aug 2022 12:34:11: 46000000 INFO @ Tue, 02 Aug 2022 12:34:13: 57000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 02 Aug 2022 12:34:16: 47000000 INFO @ Tue, 02 Aug 2022 12:34:16: 61000000 INFO @ Tue, 02 Aug 2022 12:34:18: 58000000 INFO @ Tue, 02 Aug 2022 12:34:20: 48000000 INFO @ Tue, 02 Aug 2022 12:34:21: 62000000 INFO @ Tue, 02 Aug 2022 12:34:23: 59000000 INFO @ Tue, 02 Aug 2022 12:34:25: 49000000 INFO @ Tue, 02 Aug 2022 12:34:25: 63000000 INFO @ Tue, 02 Aug 2022 12:34:27: 60000000 INFO @ Tue, 02 Aug 2022 12:34:30: 50000000 INFO @ Tue, 02 Aug 2022 12:34:30: 64000000 INFO @ Tue, 02 Aug 2022 12:34:32: 61000000 INFO @ Tue, 02 Aug 2022 12:34:35: 51000000 INFO @ Tue, 02 Aug 2022 12:34:35: 65000000 INFO @ Tue, 02 Aug 2022 12:34:37: 62000000 INFO @ Tue, 02 Aug 2022 12:34:39: 52000000 INFO @ Tue, 02 Aug 2022 12:34:40: 66000000 INFO @ Tue, 02 Aug 2022 12:34:42: 63000000 INFO @ Tue, 02 Aug 2022 12:34:44: 53000000 INFO @ Tue, 02 Aug 2022 12:34:45: 67000000 INFO @ Tue, 02 Aug 2022 12:34:47: 64000000 INFO @ Tue, 02 Aug 2022 12:34:49: 54000000 INFO @ Tue, 02 Aug 2022 12:34:50: 68000000 INFO @ Tue, 02 Aug 2022 12:34:52: 65000000 INFO @ Tue, 02 Aug 2022 12:34:53: 55000000 INFO @ Tue, 02 Aug 2022 12:34:54: 69000000 INFO @ Tue, 02 Aug 2022 12:34:56: 66000000 INFO @ Tue, 02 Aug 2022 12:34:58: 56000000 INFO @ Tue, 02 Aug 2022 12:34:59: 70000000 INFO @ Tue, 02 Aug 2022 12:35:01: 67000000 INFO @ Tue, 02 Aug 2022 12:35:03: 57000000 INFO @ Tue, 02 Aug 2022 12:35:04: 71000000 INFO @ Tue, 02 Aug 2022 12:35:06: 68000000 INFO @ Tue, 02 Aug 2022 12:35:06: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 12:35:06: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 12:35:06: #1 total tags in treatment: 25263381 INFO @ Tue, 02 Aug 2022 12:35:06: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 12:35:06: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 12:35:06: #1 tags after filtering in treatment: 15836873 INFO @ Tue, 02 Aug 2022 12:35:06: #1 Redundant rate of treatment: 0.37 INFO @ Tue, 02 Aug 2022 12:35:06: #1 finished! INFO @ Tue, 02 Aug 2022 12:35:06: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 12:35:06: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 12:35:07: 58000000 INFO @ Tue, 02 Aug 2022 12:35:08: #2 number of paired peaks: 1159 INFO @ Tue, 02 Aug 2022 12:35:08: start model_add_line... INFO @ Tue, 02 Aug 2022 12:35:08: start X-correlation... INFO @ Tue, 02 Aug 2022 12:35:08: end of X-cor INFO @ Tue, 02 Aug 2022 12:35:08: #2 finished! INFO @ Tue, 02 Aug 2022 12:35:08: #2 predicted fragment length is 65 bps INFO @ Tue, 02 Aug 2022 12:35:08: #2 alternative fragment length(s) may be 4,65 bps INFO @ Tue, 02 Aug 2022 12:35:08: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12178897/SRX12178897.05_model.r WARNING @ Tue, 02 Aug 2022 12:35:08: #2 Since the d (65) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 12:35:08: #2 You may need to consider one of the other alternative d(s): 4,65 WARNING @ Tue, 02 Aug 2022 12:35:08: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 12:35:08: #3 Call peaks... INFO @ Tue, 02 Aug 2022 12:35:08: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 12:35:10: 69000000 INFO @ Tue, 02 Aug 2022 12:35:12: 59000000 INFO @ Tue, 02 Aug 2022 12:35:15: 70000000 INFO @ Tue, 02 Aug 2022 12:35:17: 60000000 INFO @ Tue, 02 Aug 2022 12:35:20: 71000000 INFO @ Tue, 02 Aug 2022 12:35:22: 61000000 INFO @ Tue, 02 Aug 2022 12:35:22: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 12:35:22: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 12:35:22: #1 total tags in treatment: 25263381 INFO @ Tue, 02 Aug 2022 12:35:22: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 12:35:22: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 12:35:23: #1 tags after filtering in treatment: 15836873 INFO @ Tue, 02 Aug 2022 12:35:23: #1 Redundant rate of treatment: 0.37 INFO @ Tue, 02 Aug 2022 12:35:23: #1 finished! INFO @ Tue, 02 Aug 2022 12:35:23: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 12:35:23: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 12:35:24: #2 number of paired peaks: 1159 INFO @ Tue, 02 Aug 2022 12:35:24: start model_add_line... INFO @ Tue, 02 Aug 2022 12:35:24: start X-correlation... INFO @ Tue, 02 Aug 2022 12:35:24: end of X-cor INFO @ Tue, 02 Aug 2022 12:35:24: #2 finished! INFO @ Tue, 02 Aug 2022 12:35:24: #2 predicted fragment length is 65 bps INFO @ Tue, 02 Aug 2022 12:35:24: #2 alternative fragment length(s) may be 4,65 bps INFO @ Tue, 02 Aug 2022 12:35:24: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12178897/SRX12178897.10_model.r WARNING @ Tue, 02 Aug 2022 12:35:24: #2 Since the d (65) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 12:35:24: #2 You may need to consider one of the other alternative d(s): 4,65 WARNING @ Tue, 02 Aug 2022 12:35:24: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 12:35:24: #3 Call peaks... INFO @ Tue, 02 Aug 2022 12:35:24: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 12:35:27: 62000000 BigWig に変換しました。 INFO @ Tue, 02 Aug 2022 12:35:31: 63000000 INFO @ Tue, 02 Aug 2022 12:35:36: 64000000 INFO @ Tue, 02 Aug 2022 12:35:37: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 12:35:41: 65000000 INFO @ Tue, 02 Aug 2022 12:35:45: 66000000 INFO @ Tue, 02 Aug 2022 12:35:50: 67000000 INFO @ Tue, 02 Aug 2022 12:35:52: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12178897/SRX12178897.05_peaks.xls INFO @ Tue, 02 Aug 2022 12:35:52: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12178897/SRX12178897.05_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 12:35:52: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12178897/SRX12178897.05_summits.bed INFO @ Tue, 02 Aug 2022 12:35:52: Done! pass1 - making usageList (15 chroms): 3 millis INFO @ Tue, 02 Aug 2022 12:35:53: #3 Call peaks for each chromosome... pass2 - checking and writing primary data (20645 records, 4 fields): 39 millis CompletedMACS2peakCalling INFO @ Tue, 02 Aug 2022 12:35:54: 68000000 INFO @ Tue, 02 Aug 2022 12:35:59: 69000000 INFO @ Tue, 02 Aug 2022 12:36:04: 70000000 INFO @ Tue, 02 Aug 2022 12:36:08: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12178897/SRX12178897.10_peaks.xls INFO @ Tue, 02 Aug 2022 12:36:08: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12178897/SRX12178897.10_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 12:36:08: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12178897/SRX12178897.10_summits.bed INFO @ Tue, 02 Aug 2022 12:36:08: 71000000 INFO @ Tue, 02 Aug 2022 12:36:08: Done! pass1 - making usageList (14 chroms): 2 millis pass2 - checking and writing primary data (10188 records, 4 fields): 26 millis CompletedMACS2peakCalling INFO @ Tue, 02 Aug 2022 12:36:10: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 12:36:10: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 12:36:10: #1 total tags in treatment: 25263381 INFO @ Tue, 02 Aug 2022 12:36:10: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 12:36:10: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 12:36:11: #1 tags after filtering in treatment: 15836873 INFO @ Tue, 02 Aug 2022 12:36:11: #1 Redundant rate of treatment: 0.37 INFO @ Tue, 02 Aug 2022 12:36:11: #1 finished! INFO @ Tue, 02 Aug 2022 12:36:11: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 12:36:11: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 12:36:12: #2 number of paired peaks: 1159 INFO @ Tue, 02 Aug 2022 12:36:12: start model_add_line... INFO @ Tue, 02 Aug 2022 12:36:12: start X-correlation... INFO @ Tue, 02 Aug 2022 12:36:12: end of X-cor INFO @ Tue, 02 Aug 2022 12:36:12: #2 finished! INFO @ Tue, 02 Aug 2022 12:36:12: #2 predicted fragment length is 65 bps INFO @ Tue, 02 Aug 2022 12:36:12: #2 alternative fragment length(s) may be 4,65 bps INFO @ Tue, 02 Aug 2022 12:36:12: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12178897/SRX12178897.20_model.r WARNING @ Tue, 02 Aug 2022 12:36:12: #2 Since the d (65) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 12:36:12: #2 You may need to consider one of the other alternative d(s): 4,65 WARNING @ Tue, 02 Aug 2022 12:36:12: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 12:36:12: #3 Call peaks... INFO @ Tue, 02 Aug 2022 12:36:12: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 12:36:40: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 12:36:55: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12178897/SRX12178897.20_peaks.xls INFO @ Tue, 02 Aug 2022 12:36:55: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12178897/SRX12178897.20_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 12:36:55: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12178897/SRX12178897.20_summits.bed INFO @ Tue, 02 Aug 2022 12:36:55: Done! pass1 - making usageList (12 chroms): 0 millis pass2 - checking and writing primary data (1410 records, 4 fields): 35 millis CompletedMACS2peakCalling