Job ID = 16436266 SRX = SRX12178896 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2022-08-02T02:16:02 prefetch.2.10.7: 1) Downloading 'SRR15888018'... 2022-08-02T02:16:02 prefetch.2.10.7: Downloading via HTTPS... 2022-08-02T02:18:01 prefetch.2.10.7: HTTPS download succeed 2022-08-02T02:18:01 prefetch.2.10.7: 1) 'SRR15888018' was downloaded successfully 2022-08-02T02:18:01 prefetch.2.10.7: 'SRR15888018' has 0 unresolved dependencies Read 36670273 spots for SRR15888018/SRR15888018.sra Written 36670273 spots for SRR15888018/SRR15888018.sra fastq に変換しました。 bowtie でマッピング中... Your job 16437435 ("srTdm6") has been submitted Time loading reference: 00:00:01 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:58:15 36670273 reads; of these: 36670273 (100.00%) were paired; of these: 11377072 (31.03%) aligned concordantly 0 times 19703842 (53.73%) aligned concordantly exactly 1 time 5589359 (15.24%) aligned concordantly >1 times ---- 11377072 pairs aligned concordantly 0 times; of these: 4777070 (41.99%) aligned discordantly 1 time ---- 6600002 pairs aligned 0 times concordantly or discordantly; of these: 13200004 mates make up the pairs; of these: 6624728 (50.19%) aligned 0 times 4534502 (34.35%) aligned exactly 1 time 2040774 (15.46%) aligned >1 times 90.97% overall alignment rate Time searching: 00:58:16 Overall time: 00:58:16 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 28 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 5325275 / 29994511 = 0.1775 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 12:44:24: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12178896/SRX12178896.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12178896/SRX12178896.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12178896/SRX12178896.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12178896/SRX12178896.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 12:44:24: #1 read tag files... INFO @ Tue, 02 Aug 2022 12:44:24: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 12:44:31: 1000000 INFO @ Tue, 02 Aug 2022 12:44:40: 2000000 INFO @ Tue, 02 Aug 2022 12:44:48: 3000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 12:44:53: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12178896/SRX12178896.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12178896/SRX12178896.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12178896/SRX12178896.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12178896/SRX12178896.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 12:44:53: #1 read tag files... INFO @ Tue, 02 Aug 2022 12:44:53: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 12:44:56: 4000000 INFO @ Tue, 02 Aug 2022 12:45:01: 1000000 INFO @ Tue, 02 Aug 2022 12:45:03: 5000000 INFO @ Tue, 02 Aug 2022 12:45:09: 2000000 INFO @ Tue, 02 Aug 2022 12:45:10: 6000000 INFO @ Tue, 02 Aug 2022 12:45:16: 3000000 INFO @ Tue, 02 Aug 2022 12:45:17: 7000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 12:45:23: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12178896/SRX12178896.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12178896/SRX12178896.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12178896/SRX12178896.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12178896/SRX12178896.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 12:45:23: #1 read tag files... INFO @ Tue, 02 Aug 2022 12:45:23: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 12:45:24: 4000000 INFO @ Tue, 02 Aug 2022 12:45:24: 8000000 INFO @ Tue, 02 Aug 2022 12:45:31: 1000000 INFO @ Tue, 02 Aug 2022 12:45:31: 5000000 INFO @ Tue, 02 Aug 2022 12:45:31: 9000000 INFO @ Tue, 02 Aug 2022 12:45:38: 2000000 INFO @ Tue, 02 Aug 2022 12:45:39: 6000000 INFO @ Tue, 02 Aug 2022 12:45:39: 10000000 INFO @ Tue, 02 Aug 2022 12:45:46: 3000000 INFO @ Tue, 02 Aug 2022 12:45:47: 7000000 INFO @ Tue, 02 Aug 2022 12:45:47: 11000000 INFO @ Tue, 02 Aug 2022 12:45:53: 4000000 INFO @ Tue, 02 Aug 2022 12:45:55: 8000000 INFO @ Tue, 02 Aug 2022 12:45:56: 12000000 INFO @ Tue, 02 Aug 2022 12:46:00: 5000000 INFO @ Tue, 02 Aug 2022 12:46:02: 9000000 INFO @ Tue, 02 Aug 2022 12:46:04: 13000000 INFO @ Tue, 02 Aug 2022 12:46:08: 6000000 INFO @ Tue, 02 Aug 2022 12:46:09: 10000000 INFO @ Tue, 02 Aug 2022 12:46:12: 14000000 INFO @ Tue, 02 Aug 2022 12:46:16: 7000000 INFO @ Tue, 02 Aug 2022 12:46:16: 11000000 INFO @ Tue, 02 Aug 2022 12:46:20: 15000000 INFO @ Tue, 02 Aug 2022 12:46:23: 8000000 INFO @ Tue, 02 Aug 2022 12:46:23: 12000000 INFO @ Tue, 02 Aug 2022 12:46:27: 16000000 INFO @ Tue, 02 Aug 2022 12:46:30: 9000000 INFO @ Tue, 02 Aug 2022 12:46:31: 13000000 INFO @ Tue, 02 Aug 2022 12:46:34: 17000000 INFO @ Tue, 02 Aug 2022 12:46:37: 10000000 INFO @ Tue, 02 Aug 2022 12:46:38: 14000000 INFO @ Tue, 02 Aug 2022 12:46:42: 18000000 INFO @ Tue, 02 Aug 2022 12:46:45: 11000000 INFO @ Tue, 02 Aug 2022 12:46:45: 15000000 INFO @ Tue, 02 Aug 2022 12:46:50: 19000000 INFO @ Tue, 02 Aug 2022 12:46:52: 12000000 INFO @ Tue, 02 Aug 2022 12:46:52: 16000000 INFO @ Tue, 02 Aug 2022 12:46:58: 20000000 INFO @ Tue, 02 Aug 2022 12:46:59: 13000000 INFO @ Tue, 02 Aug 2022 12:47:00: 17000000 INFO @ Tue, 02 Aug 2022 12:47:06: 21000000 INFO @ Tue, 02 Aug 2022 12:47:07: 14000000 INFO @ Tue, 02 Aug 2022 12:47:07: 18000000 INFO @ Tue, 02 Aug 2022 12:47:13: 22000000 INFO @ Tue, 02 Aug 2022 12:47:14: 19000000 INFO @ Tue, 02 Aug 2022 12:47:14: 15000000 INFO @ Tue, 02 Aug 2022 12:47:21: 20000000 INFO @ Tue, 02 Aug 2022 12:47:21: 23000000 INFO @ Tue, 02 Aug 2022 12:47:22: 16000000 INFO @ Tue, 02 Aug 2022 12:47:28: 21000000 INFO @ Tue, 02 Aug 2022 12:47:29: 24000000 INFO @ Tue, 02 Aug 2022 12:47:31: 17000000 INFO @ Tue, 02 Aug 2022 12:47:34: 22000000 INFO @ Tue, 02 Aug 2022 12:47:36: 25000000 INFO @ Tue, 02 Aug 2022 12:47:38: 18000000 INFO @ Tue, 02 Aug 2022 12:47:41: 23000000 INFO @ Tue, 02 Aug 2022 12:47:44: 26000000 INFO @ Tue, 02 Aug 2022 12:47:45: 19000000 INFO @ Tue, 02 Aug 2022 12:47:48: 24000000 INFO @ Tue, 02 Aug 2022 12:47:51: 20000000 INFO @ Tue, 02 Aug 2022 12:47:52: 27000000 INFO @ Tue, 02 Aug 2022 12:47:55: 25000000 INFO @ Tue, 02 Aug 2022 12:47:58: 21000000 INFO @ Tue, 02 Aug 2022 12:48:00: 28000000 INFO @ Tue, 02 Aug 2022 12:48:02: 26000000 INFO @ Tue, 02 Aug 2022 12:48:05: 22000000 INFO @ Tue, 02 Aug 2022 12:48:07: 29000000 INFO @ Tue, 02 Aug 2022 12:48:09: 27000000 INFO @ Tue, 02 Aug 2022 12:48:13: 23000000 INFO @ Tue, 02 Aug 2022 12:48:15: 30000000 INFO @ Tue, 02 Aug 2022 12:48:16: 28000000 INFO @ Tue, 02 Aug 2022 12:48:20: 24000000 INFO @ Tue, 02 Aug 2022 12:48:23: 31000000 INFO @ Tue, 02 Aug 2022 12:48:23: 29000000 INFO @ Tue, 02 Aug 2022 12:48:26: 25000000 INFO @ Tue, 02 Aug 2022 12:48:30: 30000000 INFO @ Tue, 02 Aug 2022 12:48:30: 32000000 INFO @ Tue, 02 Aug 2022 12:48:33: 26000000 INFO @ Tue, 02 Aug 2022 12:48:37: 31000000 INFO @ Tue, 02 Aug 2022 12:48:37: 33000000 INFO @ Tue, 02 Aug 2022 12:48:40: 27000000 INFO @ Tue, 02 Aug 2022 12:48:44: 32000000 INFO @ Tue, 02 Aug 2022 12:48:45: 34000000 INFO @ Tue, 02 Aug 2022 12:48:47: 28000000 INFO @ Tue, 02 Aug 2022 12:48:51: 33000000 INFO @ Tue, 02 Aug 2022 12:48:52: 35000000 INFO @ Tue, 02 Aug 2022 12:48:54: 29000000 INFO @ Tue, 02 Aug 2022 12:48:57: 34000000 INFO @ Tue, 02 Aug 2022 12:49:00: 36000000 INFO @ Tue, 02 Aug 2022 12:49:01: 30000000 INFO @ Tue, 02 Aug 2022 12:49:04: 35000000 INFO @ Tue, 02 Aug 2022 12:49:08: 37000000 INFO @ Tue, 02 Aug 2022 12:49:08: 31000000 INFO @ Tue, 02 Aug 2022 12:49:11: 36000000 INFO @ Tue, 02 Aug 2022 12:49:15: 38000000 INFO @ Tue, 02 Aug 2022 12:49:15: 32000000 INFO @ Tue, 02 Aug 2022 12:49:18: 37000000 INFO @ Tue, 02 Aug 2022 12:49:22: 33000000 INFO @ Tue, 02 Aug 2022 12:49:22: 39000000 INFO @ Tue, 02 Aug 2022 12:49:25: 38000000 INFO @ Tue, 02 Aug 2022 12:49:29: 34000000 INFO @ Tue, 02 Aug 2022 12:49:30: 40000000 INFO @ Tue, 02 Aug 2022 12:49:32: 39000000 INFO @ Tue, 02 Aug 2022 12:49:37: 35000000 INFO @ Tue, 02 Aug 2022 12:49:38: 41000000 INFO @ Tue, 02 Aug 2022 12:49:40: 40000000 INFO @ Tue, 02 Aug 2022 12:49:44: 36000000 INFO @ Tue, 02 Aug 2022 12:49:45: 42000000 INFO @ Tue, 02 Aug 2022 12:49:46: 41000000 INFO @ Tue, 02 Aug 2022 12:49:52: 37000000 INFO @ Tue, 02 Aug 2022 12:49:53: 43000000 INFO @ Tue, 02 Aug 2022 12:49:53: 42000000 INFO @ Tue, 02 Aug 2022 12:49:59: 38000000 INFO @ Tue, 02 Aug 2022 12:50:00: 43000000 INFO @ Tue, 02 Aug 2022 12:50:01: 44000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 02 Aug 2022 12:50:06: 39000000 INFO @ Tue, 02 Aug 2022 12:50:07: 44000000 INFO @ Tue, 02 Aug 2022 12:50:09: 45000000 INFO @ Tue, 02 Aug 2022 12:50:13: 40000000 INFO @ Tue, 02 Aug 2022 12:50:14: 45000000 INFO @ Tue, 02 Aug 2022 12:50:17: 46000000 INFO @ Tue, 02 Aug 2022 12:50:20: 41000000 INFO @ Tue, 02 Aug 2022 12:50:21: 46000000 INFO @ Tue, 02 Aug 2022 12:50:26: 47000000 INFO @ Tue, 02 Aug 2022 12:50:27: 42000000 INFO @ Tue, 02 Aug 2022 12:50:29: 47000000 INFO @ Tue, 02 Aug 2022 12:50:33: 48000000 INFO @ Tue, 02 Aug 2022 12:50:34: 43000000 INFO @ Tue, 02 Aug 2022 12:50:37: 48000000 INFO @ Tue, 02 Aug 2022 12:50:40: 49000000 INFO @ Tue, 02 Aug 2022 12:50:41: 44000000 INFO @ Tue, 02 Aug 2022 12:50:45: 49000000 INFO @ Tue, 02 Aug 2022 12:50:46: 50000000 INFO @ Tue, 02 Aug 2022 12:50:48: 45000000 INFO @ Tue, 02 Aug 2022 12:50:53: 50000000 INFO @ Tue, 02 Aug 2022 12:50:53: 51000000 INFO @ Tue, 02 Aug 2022 12:50:56: 46000000 INFO @ Tue, 02 Aug 2022 12:51:00: 52000000 INFO @ Tue, 02 Aug 2022 12:51:01: 51000000 INFO @ Tue, 02 Aug 2022 12:51:03: 47000000 INFO @ Tue, 02 Aug 2022 12:51:07: 53000000 INFO @ Tue, 02 Aug 2022 12:51:09: 52000000 INFO @ Tue, 02 Aug 2022 12:51:11: 48000000 INFO @ Tue, 02 Aug 2022 12:51:14: 54000000 INFO @ Tue, 02 Aug 2022 12:51:18: 53000000 INFO @ Tue, 02 Aug 2022 12:51:20: 49000000 INFO @ Tue, 02 Aug 2022 12:51:21: 55000000 INFO @ Tue, 02 Aug 2022 12:51:26: 54000000 INFO @ Tue, 02 Aug 2022 12:51:27: 56000000 INFO @ Tue, 02 Aug 2022 12:51:28: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 12:51:28: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 12:51:28: #1 total tags in treatment: 20433177 INFO @ Tue, 02 Aug 2022 12:51:28: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 12:51:28: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 12:51:29: #1 tags after filtering in treatment: 13927974 INFO @ Tue, 02 Aug 2022 12:51:29: #1 Redundant rate of treatment: 0.32 INFO @ Tue, 02 Aug 2022 12:51:29: #1 finished! INFO @ Tue, 02 Aug 2022 12:51:29: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 12:51:29: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 12:51:29: 50000000 INFO @ Tue, 02 Aug 2022 12:51:30: #2 number of paired peaks: 937 WARNING @ Tue, 02 Aug 2022 12:51:30: Fewer paired peaks (937) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 937 pairs to build model! INFO @ Tue, 02 Aug 2022 12:51:30: start model_add_line... INFO @ Tue, 02 Aug 2022 12:51:30: start X-correlation... INFO @ Tue, 02 Aug 2022 12:51:30: end of X-cor INFO @ Tue, 02 Aug 2022 12:51:30: #2 finished! INFO @ Tue, 02 Aug 2022 12:51:30: #2 predicted fragment length is 125 bps INFO @ Tue, 02 Aug 2022 12:51:30: #2 alternative fragment length(s) may be 125 bps INFO @ Tue, 02 Aug 2022 12:51:30: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12178896/SRX12178896.05_model.r INFO @ Tue, 02 Aug 2022 12:51:30: #3 Call peaks... INFO @ Tue, 02 Aug 2022 12:51:30: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 12:51:34: 55000000 INFO @ Tue, 02 Aug 2022 12:51:37: 51000000 BigWig に変換しました。 INFO @ Tue, 02 Aug 2022 12:51:42: 56000000 INFO @ Tue, 02 Aug 2022 12:51:43: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 12:51:43: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 12:51:43: #1 total tags in treatment: 20433177 INFO @ Tue, 02 Aug 2022 12:51:43: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 12:51:43: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 12:51:44: #1 tags after filtering in treatment: 13927974 INFO @ Tue, 02 Aug 2022 12:51:44: #1 Redundant rate of treatment: 0.32 INFO @ Tue, 02 Aug 2022 12:51:44: #1 finished! INFO @ Tue, 02 Aug 2022 12:51:44: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 12:51:44: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 12:51:45: #2 number of paired peaks: 937 WARNING @ Tue, 02 Aug 2022 12:51:45: Fewer paired peaks (937) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 937 pairs to build model! INFO @ Tue, 02 Aug 2022 12:51:45: start model_add_line... INFO @ Tue, 02 Aug 2022 12:51:45: start X-correlation... INFO @ Tue, 02 Aug 2022 12:51:45: end of X-cor INFO @ Tue, 02 Aug 2022 12:51:45: #2 finished! INFO @ Tue, 02 Aug 2022 12:51:45: #2 predicted fragment length is 125 bps INFO @ Tue, 02 Aug 2022 12:51:45: #2 alternative fragment length(s) may be 125 bps INFO @ Tue, 02 Aug 2022 12:51:45: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12178896/SRX12178896.10_model.r INFO @ Tue, 02 Aug 2022 12:51:45: #3 Call peaks... INFO @ Tue, 02 Aug 2022 12:51:45: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 12:51:46: 52000000 INFO @ Tue, 02 Aug 2022 12:51:55: 53000000 INFO @ Tue, 02 Aug 2022 12:52:04: 54000000 INFO @ Tue, 02 Aug 2022 12:52:11: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 12:52:13: 55000000 INFO @ Tue, 02 Aug 2022 12:52:22: 56000000 INFO @ Tue, 02 Aug 2022 12:52:22: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 12:52:22: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 12:52:22: #1 total tags in treatment: 20433177 INFO @ Tue, 02 Aug 2022 12:52:22: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 12:52:22: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 12:52:23: #1 tags after filtering in treatment: 13927974 INFO @ Tue, 02 Aug 2022 12:52:23: #1 Redundant rate of treatment: 0.32 INFO @ Tue, 02 Aug 2022 12:52:23: #1 finished! INFO @ Tue, 02 Aug 2022 12:52:23: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 12:52:23: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 12:52:24: #2 number of paired peaks: 937 WARNING @ Tue, 02 Aug 2022 12:52:24: Fewer paired peaks (937) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 937 pairs to build model! INFO @ Tue, 02 Aug 2022 12:52:24: start model_add_line... INFO @ Tue, 02 Aug 2022 12:52:24: start X-correlation... INFO @ Tue, 02 Aug 2022 12:52:24: end of X-cor INFO @ Tue, 02 Aug 2022 12:52:24: #2 finished! INFO @ Tue, 02 Aug 2022 12:52:24: #2 predicted fragment length is 125 bps INFO @ Tue, 02 Aug 2022 12:52:24: #2 alternative fragment length(s) may be 125 bps INFO @ Tue, 02 Aug 2022 12:52:24: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12178896/SRX12178896.20_model.r INFO @ Tue, 02 Aug 2022 12:52:25: #3 Call peaks... INFO @ Tue, 02 Aug 2022 12:52:25: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 12:52:25: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 12:52:35: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12178896/SRX12178896.05_peaks.xls INFO @ Tue, 02 Aug 2022 12:52:35: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12178896/SRX12178896.05_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 12:52:35: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12178896/SRX12178896.05_summits.bed INFO @ Tue, 02 Aug 2022 12:52:35: Done! pass1 - making usageList (15 chroms): 5 millis pass2 - checking and writing primary data (13287 records, 4 fields): 71 millis CompletedMACS2peakCalling INFO @ Tue, 02 Aug 2022 12:52:47: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12178896/SRX12178896.10_peaks.xls INFO @ Tue, 02 Aug 2022 12:52:47: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12178896/SRX12178896.10_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 12:52:48: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12178896/SRX12178896.10_summits.bed INFO @ Tue, 02 Aug 2022 12:52:48: Done! pass1 - making usageList (15 chroms): 3 millis pass2 - checking and writing primary data (8431 records, 4 fields): 67 millis CompletedMACS2peakCalling INFO @ Tue, 02 Aug 2022 12:53:05: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 12:53:27: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12178896/SRX12178896.20_peaks.xls INFO @ Tue, 02 Aug 2022 12:53:27: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12178896/SRX12178896.20_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 12:53:27: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12178896/SRX12178896.20_summits.bed INFO @ Tue, 02 Aug 2022 12:53:27: Done! pass1 - making usageList (14 chroms): 2 millis pass2 - checking and writing primary data (3148 records, 4 fields): 193 millis CompletedMACS2peakCalling