Job ID = 16436258 SRX = SRX12178889 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2022-08-02T02:14:14 prefetch.2.10.7: 1) Downloading 'SRR15888025'... 2022-08-02T02:14:14 prefetch.2.10.7: Downloading via HTTPS... 2022-08-02T02:16:36 prefetch.2.10.7: HTTPS download succeed 2022-08-02T02:16:36 prefetch.2.10.7: 1) 'SRR15888025' was downloaded successfully 2022-08-02T02:16:36 prefetch.2.10.7: 'SRR15888025' has 0 unresolved dependencies Read 39499267 spots for SRR15888025/SRR15888025.sra Written 39499267 spots for SRR15888025/SRR15888025.sra fastq に変換しました。 bowtie でマッピング中... Your job 16436860 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:01 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:36:15 39499267 reads; of these: 39499267 (100.00%) were paired; of these: 10637348 (26.93%) aligned concordantly 0 times 25795159 (65.31%) aligned concordantly exactly 1 time 3066760 (7.76%) aligned concordantly >1 times ---- 10637348 pairs aligned concordantly 0 times; of these: 4306861 (40.49%) aligned discordantly 1 time ---- 6330487 pairs aligned 0 times concordantly or discordantly; of these: 12660974 mates make up the pairs; of these: 7965167 (62.91%) aligned 0 times 3505322 (27.69%) aligned exactly 1 time 1190485 (9.40%) aligned >1 times 89.92% overall alignment rate Time searching: 00:36:17 Overall time: 00:36:17 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 32 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 6584486 / 33065125 = 0.1991 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 12:11:58: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12178889/SRX12178889.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12178889/SRX12178889.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12178889/SRX12178889.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12178889/SRX12178889.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 12:11:58: #1 read tag files... INFO @ Tue, 02 Aug 2022 12:11:58: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 12:12:05: 1000000 INFO @ Tue, 02 Aug 2022 12:12:11: 2000000 INFO @ Tue, 02 Aug 2022 12:12:17: 3000000 INFO @ Tue, 02 Aug 2022 12:12:24: 4000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 12:12:28: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12178889/SRX12178889.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12178889/SRX12178889.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12178889/SRX12178889.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12178889/SRX12178889.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 12:12:28: #1 read tag files... INFO @ Tue, 02 Aug 2022 12:12:28: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 12:12:31: 5000000 INFO @ Tue, 02 Aug 2022 12:12:35: 1000000 INFO @ Tue, 02 Aug 2022 12:12:38: 6000000 INFO @ Tue, 02 Aug 2022 12:12:41: 2000000 INFO @ Tue, 02 Aug 2022 12:12:46: 7000000 INFO @ Tue, 02 Aug 2022 12:12:48: 3000000 INFO @ Tue, 02 Aug 2022 12:12:53: 8000000 INFO @ Tue, 02 Aug 2022 12:12:55: 4000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 12:12:58: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12178889/SRX12178889.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12178889/SRX12178889.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12178889/SRX12178889.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12178889/SRX12178889.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 12:12:58: #1 read tag files... INFO @ Tue, 02 Aug 2022 12:12:58: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 12:13:00: 9000000 INFO @ Tue, 02 Aug 2022 12:13:02: 5000000 INFO @ Tue, 02 Aug 2022 12:13:05: 1000000 INFO @ Tue, 02 Aug 2022 12:13:07: 10000000 INFO @ Tue, 02 Aug 2022 12:13:09: 6000000 INFO @ Tue, 02 Aug 2022 12:13:12: 2000000 INFO @ Tue, 02 Aug 2022 12:13:14: 11000000 INFO @ Tue, 02 Aug 2022 12:13:16: 7000000 INFO @ Tue, 02 Aug 2022 12:13:19: 3000000 INFO @ Tue, 02 Aug 2022 12:13:22: 12000000 INFO @ Tue, 02 Aug 2022 12:13:23: 8000000 INFO @ Tue, 02 Aug 2022 12:13:26: 4000000 INFO @ Tue, 02 Aug 2022 12:13:29: 13000000 INFO @ Tue, 02 Aug 2022 12:13:30: 9000000 INFO @ Tue, 02 Aug 2022 12:13:33: 5000000 INFO @ Tue, 02 Aug 2022 12:13:36: 14000000 INFO @ Tue, 02 Aug 2022 12:13:37: 10000000 INFO @ Tue, 02 Aug 2022 12:13:40: 6000000 INFO @ Tue, 02 Aug 2022 12:13:43: 15000000 INFO @ Tue, 02 Aug 2022 12:13:44: 11000000 INFO @ Tue, 02 Aug 2022 12:13:47: 7000000 INFO @ Tue, 02 Aug 2022 12:13:50: 16000000 INFO @ Tue, 02 Aug 2022 12:13:51: 12000000 INFO @ Tue, 02 Aug 2022 12:13:54: 8000000 INFO @ Tue, 02 Aug 2022 12:13:57: 17000000 INFO @ Tue, 02 Aug 2022 12:13:57: 13000000 INFO @ Tue, 02 Aug 2022 12:14:01: 9000000 INFO @ Tue, 02 Aug 2022 12:14:04: 14000000 INFO @ Tue, 02 Aug 2022 12:14:04: 18000000 INFO @ Tue, 02 Aug 2022 12:14:08: 10000000 INFO @ Tue, 02 Aug 2022 12:14:11: 15000000 INFO @ Tue, 02 Aug 2022 12:14:11: 19000000 INFO @ Tue, 02 Aug 2022 12:14:15: 11000000 INFO @ Tue, 02 Aug 2022 12:14:18: 16000000 INFO @ Tue, 02 Aug 2022 12:14:18: 20000000 INFO @ Tue, 02 Aug 2022 12:14:22: 12000000 INFO @ Tue, 02 Aug 2022 12:14:25: 17000000 INFO @ Tue, 02 Aug 2022 12:14:25: 21000000 INFO @ Tue, 02 Aug 2022 12:14:29: 13000000 INFO @ Tue, 02 Aug 2022 12:14:32: 18000000 INFO @ Tue, 02 Aug 2022 12:14:32: 22000000 INFO @ Tue, 02 Aug 2022 12:14:36: 14000000 INFO @ Tue, 02 Aug 2022 12:14:39: 19000000 INFO @ Tue, 02 Aug 2022 12:14:39: 23000000 INFO @ Tue, 02 Aug 2022 12:14:43: 15000000 INFO @ Tue, 02 Aug 2022 12:14:46: 20000000 INFO @ Tue, 02 Aug 2022 12:14:46: 24000000 INFO @ Tue, 02 Aug 2022 12:14:50: 16000000 INFO @ Tue, 02 Aug 2022 12:14:53: 21000000 INFO @ Tue, 02 Aug 2022 12:14:53: 25000000 INFO @ Tue, 02 Aug 2022 12:14:57: 17000000 INFO @ Tue, 02 Aug 2022 12:15:00: 22000000 INFO @ Tue, 02 Aug 2022 12:15:00: 26000000 INFO @ Tue, 02 Aug 2022 12:15:04: 18000000 INFO @ Tue, 02 Aug 2022 12:15:07: 23000000 INFO @ Tue, 02 Aug 2022 12:15:07: 27000000 INFO @ Tue, 02 Aug 2022 12:15:11: 19000000 INFO @ Tue, 02 Aug 2022 12:15:14: 24000000 INFO @ Tue, 02 Aug 2022 12:15:14: 28000000 INFO @ Tue, 02 Aug 2022 12:15:18: 20000000 INFO @ Tue, 02 Aug 2022 12:15:20: 25000000 INFO @ Tue, 02 Aug 2022 12:15:21: 29000000 INFO @ Tue, 02 Aug 2022 12:15:25: 21000000 INFO @ Tue, 02 Aug 2022 12:15:27: 26000000 INFO @ Tue, 02 Aug 2022 12:15:28: 30000000 INFO @ Tue, 02 Aug 2022 12:15:31: 22000000 INFO @ Tue, 02 Aug 2022 12:15:34: 27000000 INFO @ Tue, 02 Aug 2022 12:15:35: 31000000 INFO @ Tue, 02 Aug 2022 12:15:38: 23000000 INFO @ Tue, 02 Aug 2022 12:15:41: 28000000 INFO @ Tue, 02 Aug 2022 12:15:42: 32000000 INFO @ Tue, 02 Aug 2022 12:15:45: 24000000 INFO @ Tue, 02 Aug 2022 12:15:48: 29000000 INFO @ Tue, 02 Aug 2022 12:15:49: 33000000 INFO @ Tue, 02 Aug 2022 12:15:52: 25000000 INFO @ Tue, 02 Aug 2022 12:15:55: 30000000 INFO @ Tue, 02 Aug 2022 12:15:56: 34000000 INFO @ Tue, 02 Aug 2022 12:15:59: 26000000 INFO @ Tue, 02 Aug 2022 12:16:02: 31000000 INFO @ Tue, 02 Aug 2022 12:16:03: 35000000 INFO @ Tue, 02 Aug 2022 12:16:06: 27000000 INFO @ Tue, 02 Aug 2022 12:16:09: 32000000 INFO @ Tue, 02 Aug 2022 12:16:10: 36000000 INFO @ Tue, 02 Aug 2022 12:16:13: 28000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 02 Aug 2022 12:16:16: 33000000 INFO @ Tue, 02 Aug 2022 12:16:17: 37000000 INFO @ Tue, 02 Aug 2022 12:16:19: 29000000 INFO @ Tue, 02 Aug 2022 12:16:23: 34000000 INFO @ Tue, 02 Aug 2022 12:16:24: 38000000 INFO @ Tue, 02 Aug 2022 12:16:26: 30000000 INFO @ Tue, 02 Aug 2022 12:16:29: 35000000 INFO @ Tue, 02 Aug 2022 12:16:30: 39000000 INFO @ Tue, 02 Aug 2022 12:16:33: 31000000 INFO @ Tue, 02 Aug 2022 12:16:36: 36000000 INFO @ Tue, 02 Aug 2022 12:16:37: 40000000 INFO @ Tue, 02 Aug 2022 12:16:40: 32000000 INFO @ Tue, 02 Aug 2022 12:16:43: 37000000 INFO @ Tue, 02 Aug 2022 12:16:44: 41000000 INFO @ Tue, 02 Aug 2022 12:16:47: 33000000 INFO @ Tue, 02 Aug 2022 12:16:50: 38000000 INFO @ Tue, 02 Aug 2022 12:16:51: 42000000 INFO @ Tue, 02 Aug 2022 12:16:54: 34000000 INFO @ Tue, 02 Aug 2022 12:16:57: 39000000 INFO @ Tue, 02 Aug 2022 12:16:58: 43000000 INFO @ Tue, 02 Aug 2022 12:17:01: 35000000 INFO @ Tue, 02 Aug 2022 12:17:04: 40000000 INFO @ Tue, 02 Aug 2022 12:17:05: 44000000 INFO @ Tue, 02 Aug 2022 12:17:08: 36000000 INFO @ Tue, 02 Aug 2022 12:17:10: 41000000 INFO @ Tue, 02 Aug 2022 12:17:12: 45000000 INFO @ Tue, 02 Aug 2022 12:17:15: 37000000 BigWig に変換しました。 INFO @ Tue, 02 Aug 2022 12:17:17: 42000000 INFO @ Tue, 02 Aug 2022 12:17:19: 46000000 INFO @ Tue, 02 Aug 2022 12:17:21: 38000000 INFO @ Tue, 02 Aug 2022 12:17:24: 43000000 INFO @ Tue, 02 Aug 2022 12:17:26: 47000000 INFO @ Tue, 02 Aug 2022 12:17:28: 39000000 INFO @ Tue, 02 Aug 2022 12:17:31: 44000000 INFO @ Tue, 02 Aug 2022 12:17:33: 48000000 INFO @ Tue, 02 Aug 2022 12:17:35: 40000000 INFO @ Tue, 02 Aug 2022 12:17:38: 45000000 INFO @ Tue, 02 Aug 2022 12:17:40: 49000000 INFO @ Tue, 02 Aug 2022 12:17:42: 41000000 INFO @ Tue, 02 Aug 2022 12:17:45: 46000000 INFO @ Tue, 02 Aug 2022 12:17:47: 50000000 INFO @ Tue, 02 Aug 2022 12:17:49: 42000000 INFO @ Tue, 02 Aug 2022 12:17:52: 47000000 INFO @ Tue, 02 Aug 2022 12:17:54: 51000000 INFO @ Tue, 02 Aug 2022 12:17:56: 43000000 INFO @ Tue, 02 Aug 2022 12:17:59: 48000000 INFO @ Tue, 02 Aug 2022 12:18:01: 52000000 INFO @ Tue, 02 Aug 2022 12:18:03: 44000000 INFO @ Tue, 02 Aug 2022 12:18:06: 49000000 INFO @ Tue, 02 Aug 2022 12:18:08: 53000000 INFO @ Tue, 02 Aug 2022 12:18:11: 45000000 INFO @ Tue, 02 Aug 2022 12:18:14: 50000000 INFO @ Tue, 02 Aug 2022 12:18:15: 54000000 INFO @ Tue, 02 Aug 2022 12:18:18: 46000000 INFO @ Tue, 02 Aug 2022 12:18:21: 51000000 INFO @ Tue, 02 Aug 2022 12:18:22: 55000000 INFO @ Tue, 02 Aug 2022 12:18:25: 47000000 INFO @ Tue, 02 Aug 2022 12:18:28: 52000000 INFO @ Tue, 02 Aug 2022 12:18:29: 56000000 INFO @ Tue, 02 Aug 2022 12:18:32: 48000000 INFO @ Tue, 02 Aug 2022 12:18:35: 53000000 INFO @ Tue, 02 Aug 2022 12:18:36: 57000000 INFO @ Tue, 02 Aug 2022 12:18:39: 49000000 INFO @ Tue, 02 Aug 2022 12:18:42: 54000000 INFO @ Tue, 02 Aug 2022 12:18:42: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 12:18:42: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 12:18:42: #1 total tags in treatment: 22842297 INFO @ Tue, 02 Aug 2022 12:18:42: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 12:18:42: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 12:18:43: #1 tags after filtering in treatment: 14335100 INFO @ Tue, 02 Aug 2022 12:18:43: #1 Redundant rate of treatment: 0.37 INFO @ Tue, 02 Aug 2022 12:18:43: #1 finished! INFO @ Tue, 02 Aug 2022 12:18:43: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 12:18:43: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 12:18:44: #2 number of paired peaks: 1740 INFO @ Tue, 02 Aug 2022 12:18:44: start model_add_line... INFO @ Tue, 02 Aug 2022 12:18:44: start X-correlation... INFO @ Tue, 02 Aug 2022 12:18:44: end of X-cor INFO @ Tue, 02 Aug 2022 12:18:44: #2 finished! INFO @ Tue, 02 Aug 2022 12:18:44: #2 predicted fragment length is 55 bps INFO @ Tue, 02 Aug 2022 12:18:44: #2 alternative fragment length(s) may be 4,55 bps INFO @ Tue, 02 Aug 2022 12:18:44: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12178889/SRX12178889.05_model.r WARNING @ Tue, 02 Aug 2022 12:18:44: #2 Since the d (55) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 12:18:44: #2 You may need to consider one of the other alternative d(s): 4,55 WARNING @ Tue, 02 Aug 2022 12:18:44: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 12:18:44: #3 Call peaks... INFO @ Tue, 02 Aug 2022 12:18:44: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 12:18:46: 50000000 INFO @ Tue, 02 Aug 2022 12:18:49: 55000000 INFO @ Tue, 02 Aug 2022 12:18:53: 51000000 INFO @ Tue, 02 Aug 2022 12:18:55: 56000000 INFO @ Tue, 02 Aug 2022 12:19:00: 52000000 INFO @ Tue, 02 Aug 2022 12:19:02: 57000000 INFO @ Tue, 02 Aug 2022 12:19:06: 53000000 INFO @ Tue, 02 Aug 2022 12:19:08: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 12:19:08: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 12:19:08: #1 total tags in treatment: 22842297 INFO @ Tue, 02 Aug 2022 12:19:08: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 12:19:08: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 12:19:08: #1 tags after filtering in treatment: 14335100 INFO @ Tue, 02 Aug 2022 12:19:08: #1 Redundant rate of treatment: 0.37 INFO @ Tue, 02 Aug 2022 12:19:08: #1 finished! INFO @ Tue, 02 Aug 2022 12:19:08: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 12:19:08: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 12:19:09: #2 number of paired peaks: 1740 INFO @ Tue, 02 Aug 2022 12:19:09: start model_add_line... INFO @ Tue, 02 Aug 2022 12:19:10: start X-correlation... INFO @ Tue, 02 Aug 2022 12:19:10: end of X-cor INFO @ Tue, 02 Aug 2022 12:19:10: #2 finished! INFO @ Tue, 02 Aug 2022 12:19:10: #2 predicted fragment length is 55 bps INFO @ Tue, 02 Aug 2022 12:19:10: #2 alternative fragment length(s) may be 4,55 bps INFO @ Tue, 02 Aug 2022 12:19:10: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12178889/SRX12178889.10_model.r INFO @ Tue, 02 Aug 2022 12:19:10: #3 Call peaks for each chromosome... WARNING @ Tue, 02 Aug 2022 12:19:10: #2 Since the d (55) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 12:19:10: #2 You may need to consider one of the other alternative d(s): 4,55 WARNING @ Tue, 02 Aug 2022 12:19:10: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 12:19:10: #3 Call peaks... INFO @ Tue, 02 Aug 2022 12:19:10: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 12:19:12: 54000000 INFO @ Tue, 02 Aug 2022 12:19:18: 55000000 INFO @ Tue, 02 Aug 2022 12:19:23: 56000000 INFO @ Tue, 02 Aug 2022 12:19:24: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12178889/SRX12178889.05_peaks.xls INFO @ Tue, 02 Aug 2022 12:19:24: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12178889/SRX12178889.05_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 12:19:24: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12178889/SRX12178889.05_summits.bed INFO @ Tue, 02 Aug 2022 12:19:24: Done! pass1 - making usageList (15 chroms): 4 millis pass2 - checking and writing primary data (21750 records, 4 fields): 72 millis CompletedMACS2peakCalling INFO @ Tue, 02 Aug 2022 12:19:29: 57000000 INFO @ Tue, 02 Aug 2022 12:19:34: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 12:19:34: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 12:19:34: #1 total tags in treatment: 22842297 INFO @ Tue, 02 Aug 2022 12:19:34: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 12:19:34: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 12:19:34: #1 tags after filtering in treatment: 14335100 INFO @ Tue, 02 Aug 2022 12:19:34: #1 Redundant rate of treatment: 0.37 INFO @ Tue, 02 Aug 2022 12:19:34: #1 finished! INFO @ Tue, 02 Aug 2022 12:19:34: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 12:19:34: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 12:19:35: #2 number of paired peaks: 1740 INFO @ Tue, 02 Aug 2022 12:19:35: start model_add_line... INFO @ Tue, 02 Aug 2022 12:19:36: start X-correlation... INFO @ Tue, 02 Aug 2022 12:19:36: end of X-cor INFO @ Tue, 02 Aug 2022 12:19:36: #2 finished! INFO @ Tue, 02 Aug 2022 12:19:36: #2 predicted fragment length is 55 bps INFO @ Tue, 02 Aug 2022 12:19:36: #2 alternative fragment length(s) may be 4,55 bps INFO @ Tue, 02 Aug 2022 12:19:36: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12178889/SRX12178889.20_model.r WARNING @ Tue, 02 Aug 2022 12:19:36: #2 Since the d (55) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 12:19:36: #2 You may need to consider one of the other alternative d(s): 4,55 WARNING @ Tue, 02 Aug 2022 12:19:36: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 12:19:36: #3 Call peaks... INFO @ Tue, 02 Aug 2022 12:19:36: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 12:19:38: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 12:19:54: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12178889/SRX12178889.10_peaks.xls INFO @ Tue, 02 Aug 2022 12:19:54: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12178889/SRX12178889.10_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 12:19:54: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12178889/SRX12178889.10_summits.bed INFO @ Tue, 02 Aug 2022 12:19:54: Done! pass1 - making usageList (15 chroms): 2 millis pass2 - checking and writing primary data (9923 records, 4 fields): 26 millis CompletedMACS2peakCalling INFO @ Tue, 02 Aug 2022 12:20:05: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 12:20:20: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12178889/SRX12178889.20_peaks.xls INFO @ Tue, 02 Aug 2022 12:20:20: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12178889/SRX12178889.20_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 12:20:20: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12178889/SRX12178889.20_summits.bed INFO @ Tue, 02 Aug 2022 12:20:20: Done! pass1 - making usageList (11 chroms): 1 millis pass2 - checking and writing primary data (868 records, 4 fields): 71 millis CompletedMACS2peakCalling