Job ID = 16436257 SRX = SRX12178888 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2022-08-02T02:13:59 prefetch.2.10.7: 1) Downloading 'SRR15888026'... 2022-08-02T02:13:59 prefetch.2.10.7: Downloading via HTTPS... 2022-08-02T02:16:25 prefetch.2.10.7: HTTPS download succeed 2022-08-02T02:16:25 prefetch.2.10.7: 1) 'SRR15888026' was downloaded successfully 2022-08-02T02:16:25 prefetch.2.10.7: 'SRR15888026' has 0 unresolved dependencies Read 42782854 spots for SRR15888026/SRR15888026.sra Written 42782854 spots for SRR15888026/SRR15888026.sra fastq に変換しました。 bowtie でマッピング中... Your job 16436853 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:35:14 42782854 reads; of these: 42782854 (100.00%) were paired; of these: 12836030 (30.00%) aligned concordantly 0 times 26298210 (61.47%) aligned concordantly exactly 1 time 3648614 (8.53%) aligned concordantly >1 times ---- 12836030 pairs aligned concordantly 0 times; of these: 4596201 (35.81%) aligned discordantly 1 time ---- 8239829 pairs aligned 0 times concordantly or discordantly; of these: 16479658 mates make up the pairs; of these: 11866977 (72.01%) aligned 0 times 3445662 (20.91%) aligned exactly 1 time 1167019 (7.08%) aligned >1 times 86.13% overall alignment rate Time searching: 00:35:14 Overall time: 00:35:14 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 32 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 7887567 / 34371519 = 0.2295 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 12:11:21: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12178888/SRX12178888.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12178888/SRX12178888.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12178888/SRX12178888.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12178888/SRX12178888.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 12:11:21: #1 read tag files... INFO @ Tue, 02 Aug 2022 12:11:21: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 12:11:25: 1000000 INFO @ Tue, 02 Aug 2022 12:11:29: 2000000 INFO @ Tue, 02 Aug 2022 12:11:33: 3000000 INFO @ Tue, 02 Aug 2022 12:11:37: 4000000 INFO @ Tue, 02 Aug 2022 12:11:41: 5000000 INFO @ Tue, 02 Aug 2022 12:11:45: 6000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 12:11:49: 7000000 INFO @ Tue, 02 Aug 2022 12:11:51: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12178888/SRX12178888.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12178888/SRX12178888.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12178888/SRX12178888.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12178888/SRX12178888.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 12:11:51: #1 read tag files... INFO @ Tue, 02 Aug 2022 12:11:51: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 12:11:54: 8000000 INFO @ Tue, 02 Aug 2022 12:11:55: 1000000 INFO @ Tue, 02 Aug 2022 12:11:58: 9000000 INFO @ Tue, 02 Aug 2022 12:12:00: 2000000 INFO @ Tue, 02 Aug 2022 12:12:02: 10000000 INFO @ Tue, 02 Aug 2022 12:12:05: 3000000 INFO @ Tue, 02 Aug 2022 12:12:06: 11000000 INFO @ Tue, 02 Aug 2022 12:12:10: 4000000 INFO @ Tue, 02 Aug 2022 12:12:10: 12000000 INFO @ Tue, 02 Aug 2022 12:12:14: 5000000 INFO @ Tue, 02 Aug 2022 12:12:15: 13000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 12:12:19: 14000000 INFO @ Tue, 02 Aug 2022 12:12:19: 6000000 INFO @ Tue, 02 Aug 2022 12:12:20: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12178888/SRX12178888.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12178888/SRX12178888.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12178888/SRX12178888.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12178888/SRX12178888.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 12:12:20: #1 read tag files... INFO @ Tue, 02 Aug 2022 12:12:20: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 12:12:23: 15000000 INFO @ Tue, 02 Aug 2022 12:12:24: 7000000 INFO @ Tue, 02 Aug 2022 12:12:25: 1000000 INFO @ Tue, 02 Aug 2022 12:12:27: 16000000 INFO @ Tue, 02 Aug 2022 12:12:29: 8000000 INFO @ Tue, 02 Aug 2022 12:12:29: 2000000 INFO @ Tue, 02 Aug 2022 12:12:32: 17000000 INFO @ Tue, 02 Aug 2022 12:12:33: 3000000 INFO @ Tue, 02 Aug 2022 12:12:34: 9000000 INFO @ Tue, 02 Aug 2022 12:12:36: 18000000 INFO @ Tue, 02 Aug 2022 12:12:38: 4000000 INFO @ Tue, 02 Aug 2022 12:12:38: 10000000 INFO @ Tue, 02 Aug 2022 12:12:40: 19000000 INFO @ Tue, 02 Aug 2022 12:12:42: 5000000 INFO @ Tue, 02 Aug 2022 12:12:43: 11000000 INFO @ Tue, 02 Aug 2022 12:12:45: 20000000 INFO @ Tue, 02 Aug 2022 12:12:46: 6000000 INFO @ Tue, 02 Aug 2022 12:12:48: 12000000 INFO @ Tue, 02 Aug 2022 12:12:49: 21000000 INFO @ Tue, 02 Aug 2022 12:12:50: 7000000 INFO @ Tue, 02 Aug 2022 12:12:53: 13000000 INFO @ Tue, 02 Aug 2022 12:12:53: 22000000 INFO @ Tue, 02 Aug 2022 12:12:54: 8000000 INFO @ Tue, 02 Aug 2022 12:12:58: 14000000 INFO @ Tue, 02 Aug 2022 12:12:58: 23000000 INFO @ Tue, 02 Aug 2022 12:12:59: 9000000 INFO @ Tue, 02 Aug 2022 12:13:02: 24000000 INFO @ Tue, 02 Aug 2022 12:13:02: 15000000 INFO @ Tue, 02 Aug 2022 12:13:03: 10000000 INFO @ Tue, 02 Aug 2022 12:13:06: 25000000 INFO @ Tue, 02 Aug 2022 12:13:07: 11000000 INFO @ Tue, 02 Aug 2022 12:13:07: 16000000 INFO @ Tue, 02 Aug 2022 12:13:10: 26000000 INFO @ Tue, 02 Aug 2022 12:13:11: 12000000 INFO @ Tue, 02 Aug 2022 12:13:12: 17000000 INFO @ Tue, 02 Aug 2022 12:13:15: 27000000 INFO @ Tue, 02 Aug 2022 12:13:15: 13000000 INFO @ Tue, 02 Aug 2022 12:13:17: 18000000 INFO @ Tue, 02 Aug 2022 12:13:19: 28000000 INFO @ Tue, 02 Aug 2022 12:13:20: 14000000 INFO @ Tue, 02 Aug 2022 12:13:21: 19000000 INFO @ Tue, 02 Aug 2022 12:13:23: 29000000 INFO @ Tue, 02 Aug 2022 12:13:24: 15000000 INFO @ Tue, 02 Aug 2022 12:13:26: 20000000 INFO @ Tue, 02 Aug 2022 12:13:28: 30000000 INFO @ Tue, 02 Aug 2022 12:13:28: 16000000 INFO @ Tue, 02 Aug 2022 12:13:31: 21000000 INFO @ Tue, 02 Aug 2022 12:13:32: 31000000 INFO @ Tue, 02 Aug 2022 12:13:32: 17000000 INFO @ Tue, 02 Aug 2022 12:13:36: 22000000 INFO @ Tue, 02 Aug 2022 12:13:36: 32000000 INFO @ Tue, 02 Aug 2022 12:13:36: 18000000 INFO @ Tue, 02 Aug 2022 12:13:40: 33000000 INFO @ Tue, 02 Aug 2022 12:13:41: 19000000 INFO @ Tue, 02 Aug 2022 12:13:41: 23000000 INFO @ Tue, 02 Aug 2022 12:13:44: 34000000 INFO @ Tue, 02 Aug 2022 12:13:45: 20000000 INFO @ Tue, 02 Aug 2022 12:13:45: 24000000 INFO @ Tue, 02 Aug 2022 12:13:49: 35000000 INFO @ Tue, 02 Aug 2022 12:13:49: 21000000 INFO @ Tue, 02 Aug 2022 12:13:50: 25000000 INFO @ Tue, 02 Aug 2022 12:13:53: 36000000 INFO @ Tue, 02 Aug 2022 12:13:53: 22000000 INFO @ Tue, 02 Aug 2022 12:13:55: 26000000 INFO @ Tue, 02 Aug 2022 12:13:57: 37000000 INFO @ Tue, 02 Aug 2022 12:13:57: 23000000 INFO @ Tue, 02 Aug 2022 12:14:00: 27000000 INFO @ Tue, 02 Aug 2022 12:14:02: 38000000 INFO @ Tue, 02 Aug 2022 12:14:02: 24000000 INFO @ Tue, 02 Aug 2022 12:14:04: 28000000 INFO @ Tue, 02 Aug 2022 12:14:06: 25000000 INFO @ Tue, 02 Aug 2022 12:14:06: 39000000 INFO @ Tue, 02 Aug 2022 12:14:09: 29000000 INFO @ Tue, 02 Aug 2022 12:14:10: 26000000 INFO @ Tue, 02 Aug 2022 12:14:10: 40000000 INFO @ Tue, 02 Aug 2022 12:14:14: 30000000 INFO @ Tue, 02 Aug 2022 12:14:14: 27000000 INFO @ Tue, 02 Aug 2022 12:14:14: 41000000 INFO @ Tue, 02 Aug 2022 12:14:18: 28000000 INFO @ Tue, 02 Aug 2022 12:14:18: 31000000 INFO @ Tue, 02 Aug 2022 12:14:19: 42000000 INFO @ Tue, 02 Aug 2022 12:14:23: 29000000 INFO @ Tue, 02 Aug 2022 12:14:23: 43000000 INFO @ Tue, 02 Aug 2022 12:14:23: 32000000 INFO @ Tue, 02 Aug 2022 12:14:27: 30000000 INFO @ Tue, 02 Aug 2022 12:14:27: 44000000 INFO @ Tue, 02 Aug 2022 12:14:28: 33000000 INFO @ Tue, 02 Aug 2022 12:14:31: 31000000 INFO @ Tue, 02 Aug 2022 12:14:32: 45000000 INFO @ Tue, 02 Aug 2022 12:14:33: 34000000 INFO @ Tue, 02 Aug 2022 12:14:35: 32000000 INFO @ Tue, 02 Aug 2022 12:14:36: 46000000 INFO @ Tue, 02 Aug 2022 12:14:37: 35000000 INFO @ Tue, 02 Aug 2022 12:14:39: 33000000 INFO @ Tue, 02 Aug 2022 12:14:41: 47000000 INFO @ Tue, 02 Aug 2022 12:14:42: 36000000 INFO @ Tue, 02 Aug 2022 12:14:43: 34000000 INFO @ Tue, 02 Aug 2022 12:14:45: 48000000 INFO @ Tue, 02 Aug 2022 12:14:47: 37000000 INFO @ Tue, 02 Aug 2022 12:14:47: 35000000 INFO @ Tue, 02 Aug 2022 12:14:49: 49000000 INFO @ Tue, 02 Aug 2022 12:14:51: 38000000 INFO @ Tue, 02 Aug 2022 12:14:52: 36000000 INFO @ Tue, 02 Aug 2022 12:14:54: 50000000 INFO @ Tue, 02 Aug 2022 12:14:56: 37000000 INFO @ Tue, 02 Aug 2022 12:14:56: 39000000 INFO @ Tue, 02 Aug 2022 12:14:58: 51000000 INFO @ Tue, 02 Aug 2022 12:15:00: 38000000 INFO @ Tue, 02 Aug 2022 12:15:01: 40000000 INFO @ Tue, 02 Aug 2022 12:15:02: 52000000 INFO @ Tue, 02 Aug 2022 12:15:04: 39000000 INFO @ Tue, 02 Aug 2022 12:15:06: 41000000 INFO @ Tue, 02 Aug 2022 12:15:07: 53000000 INFO @ Tue, 02 Aug 2022 12:15:08: 40000000 INFO @ Tue, 02 Aug 2022 12:15:10: 42000000 INFO @ Tue, 02 Aug 2022 12:15:11: 54000000 INFO @ Tue, 02 Aug 2022 12:15:12: 41000000 INFO @ Tue, 02 Aug 2022 12:15:15: 43000000 INFO @ Tue, 02 Aug 2022 12:15:15: 55000000 INFO @ Tue, 02 Aug 2022 12:15:17: 42000000 INFO @ Tue, 02 Aug 2022 12:15:20: 56000000 INFO @ Tue, 02 Aug 2022 12:15:20: 44000000 INFO @ Tue, 02 Aug 2022 12:15:21: 43000000 INFO @ Tue, 02 Aug 2022 12:15:24: 57000000 INFO @ Tue, 02 Aug 2022 12:15:25: 45000000 INFO @ Tue, 02 Aug 2022 12:15:25: 44000000 INFO @ Tue, 02 Aug 2022 12:15:28: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 12:15:28: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 12:15:28: #1 total tags in treatment: 22812086 INFO @ Tue, 02 Aug 2022 12:15:28: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 12:15:28: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 12:15:29: #1 tags after filtering in treatment: 15036403 INFO @ Tue, 02 Aug 2022 12:15:29: #1 Redundant rate of treatment: 0.34 INFO @ Tue, 02 Aug 2022 12:15:29: #1 finished! INFO @ Tue, 02 Aug 2022 12:15:29: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 12:15:29: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 12:15:29: 45000000 INFO @ Tue, 02 Aug 2022 12:15:30: 46000000 INFO @ Tue, 02 Aug 2022 12:15:30: #2 number of paired peaks: 1232 INFO @ Tue, 02 Aug 2022 12:15:30: start model_add_line... INFO @ Tue, 02 Aug 2022 12:15:30: start X-correlation... INFO @ Tue, 02 Aug 2022 12:15:30: end of X-cor INFO @ Tue, 02 Aug 2022 12:15:30: #2 finished! INFO @ Tue, 02 Aug 2022 12:15:30: #2 predicted fragment length is 54 bps INFO @ Tue, 02 Aug 2022 12:15:30: #2 alternative fragment length(s) may be 4,54 bps INFO @ Tue, 02 Aug 2022 12:15:30: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12178888/SRX12178888.05_model.r WARNING @ Tue, 02 Aug 2022 12:15:30: #2 Since the d (54) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 12:15:30: #2 You may need to consider one of the other alternative d(s): 4,54 WARNING @ Tue, 02 Aug 2022 12:15:30: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 12:15:30: #3 Call peaks... INFO @ Tue, 02 Aug 2022 12:15:30: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 12:15:33: 46000000 INFO @ Tue, 02 Aug 2022 12:15:34: 47000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 02 Aug 2022 12:15:38: 47000000 INFO @ Tue, 02 Aug 2022 12:15:39: 48000000 INFO @ Tue, 02 Aug 2022 12:15:42: 48000000 INFO @ Tue, 02 Aug 2022 12:15:44: 49000000 INFO @ Tue, 02 Aug 2022 12:15:46: 49000000 INFO @ Tue, 02 Aug 2022 12:15:49: 50000000 INFO @ Tue, 02 Aug 2022 12:15:50: 50000000 INFO @ Tue, 02 Aug 2022 12:15:53: 51000000 INFO @ Tue, 02 Aug 2022 12:15:55: 51000000 INFO @ Tue, 02 Aug 2022 12:15:58: 52000000 INFO @ Tue, 02 Aug 2022 12:15:59: 52000000 INFO @ Tue, 02 Aug 2022 12:16:00: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 12:16:03: 53000000 INFO @ Tue, 02 Aug 2022 12:16:03: 53000000 INFO @ Tue, 02 Aug 2022 12:16:08: 54000000 INFO @ Tue, 02 Aug 2022 12:16:08: 54000000 INFO @ Tue, 02 Aug 2022 12:16:12: 55000000 INFO @ Tue, 02 Aug 2022 12:16:13: 55000000 INFO @ Tue, 02 Aug 2022 12:16:16: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12178888/SRX12178888.05_peaks.xls INFO @ Tue, 02 Aug 2022 12:16:16: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12178888/SRX12178888.05_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 12:16:16: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12178888/SRX12178888.05_summits.bed INFO @ Tue, 02 Aug 2022 12:16:16: Done! pass1 - making usageList (14 chroms): 3 millis pass2 - checking and writing primary data (19755 records, 4 fields): 34 millis CompletedMACS2peakCalling INFO @ Tue, 02 Aug 2022 12:16:17: 56000000 INFO @ Tue, 02 Aug 2022 12:16:18: 56000000 INFO @ Tue, 02 Aug 2022 12:16:22: 57000000 INFO @ Tue, 02 Aug 2022 12:16:22: 57000000 INFO @ Tue, 02 Aug 2022 12:16:27: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 12:16:27: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 12:16:27: #1 total tags in treatment: 22812086 INFO @ Tue, 02 Aug 2022 12:16:27: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 12:16:27: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 12:16:27: #1 tags after filtering in treatment: 15036403 INFO @ Tue, 02 Aug 2022 12:16:27: #1 Redundant rate of treatment: 0.34 INFO @ Tue, 02 Aug 2022 12:16:27: #1 finished! INFO @ Tue, 02 Aug 2022 12:16:27: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 12:16:27: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 12:16:27: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 12:16:27: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 12:16:27: #1 total tags in treatment: 22812086 INFO @ Tue, 02 Aug 2022 12:16:27: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 12:16:27: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 12:16:27: #1 tags after filtering in treatment: 15036403 INFO @ Tue, 02 Aug 2022 12:16:27: #1 Redundant rate of treatment: 0.34 INFO @ Tue, 02 Aug 2022 12:16:27: #1 finished! INFO @ Tue, 02 Aug 2022 12:16:27: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 12:16:27: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 12:16:28: #2 number of paired peaks: 1232 INFO @ Tue, 02 Aug 2022 12:16:28: start model_add_line... INFO @ Tue, 02 Aug 2022 12:16:28: start X-correlation... INFO @ Tue, 02 Aug 2022 12:16:28: end of X-cor INFO @ Tue, 02 Aug 2022 12:16:28: #2 finished! INFO @ Tue, 02 Aug 2022 12:16:28: #2 predicted fragment length is 54 bps INFO @ Tue, 02 Aug 2022 12:16:28: #2 alternative fragment length(s) may be 4,54 bps INFO @ Tue, 02 Aug 2022 12:16:28: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12178888/SRX12178888.10_model.r WARNING @ Tue, 02 Aug 2022 12:16:28: #2 Since the d (54) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 12:16:28: #2 You may need to consider one of the other alternative d(s): 4,54 WARNING @ Tue, 02 Aug 2022 12:16:28: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 12:16:28: #3 Call peaks... INFO @ Tue, 02 Aug 2022 12:16:28: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 12:16:29: #2 number of paired peaks: 1232 INFO @ Tue, 02 Aug 2022 12:16:29: start model_add_line... INFO @ Tue, 02 Aug 2022 12:16:29: start X-correlation... INFO @ Tue, 02 Aug 2022 12:16:29: end of X-cor INFO @ Tue, 02 Aug 2022 12:16:29: #2 finished! INFO @ Tue, 02 Aug 2022 12:16:29: #2 predicted fragment length is 54 bps INFO @ Tue, 02 Aug 2022 12:16:29: #2 alternative fragment length(s) may be 4,54 bps INFO @ Tue, 02 Aug 2022 12:16:29: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12178888/SRX12178888.20_model.r WARNING @ Tue, 02 Aug 2022 12:16:29: #2 Since the d (54) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 12:16:29: #2 You may need to consider one of the other alternative d(s): 4,54 WARNING @ Tue, 02 Aug 2022 12:16:29: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 12:16:29: #3 Call peaks... INFO @ Tue, 02 Aug 2022 12:16:29: #3 Pre-compute pvalue-qvalue table... BigWig に変換しました。 INFO @ Tue, 02 Aug 2022 12:16:56: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 12:16:57: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 12:17:11: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12178888/SRX12178888.10_peaks.xls INFO @ Tue, 02 Aug 2022 12:17:11: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12178888/SRX12178888.20_peaks.xls INFO @ Tue, 02 Aug 2022 12:17:11: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12178888/SRX12178888.10_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 12:17:11: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12178888/SRX12178888.20_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 12:17:11: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12178888/SRX12178888.20_summits.bed INFO @ Tue, 02 Aug 2022 12:17:11: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12178888/SRX12178888.10_summits.bed INFO @ Tue, 02 Aug 2022 12:17:11: Done! INFO @ Tue, 02 Aug 2022 12:17:11: Done! pass1 - making usageList (12 chroms): 1 millis pass2 - checking and writing primary data (1970 records, 4 fields): 32 millis CompletedMACS2peakCalling pass1 - making usageList (14 chroms): 2 millis pass2 - checking and writing primary data (10571 records, 4 fields): 29 millis CompletedMACS2peakCalling