Job ID = 16436255 SRX = SRX12178886 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2022-08-02T02:12:37 prefetch.2.10.7: 1) Downloading 'SRR15888028'... 2022-08-02T02:12:37 prefetch.2.10.7: Downloading via HTTPS... 2022-08-02T02:14:27 prefetch.2.10.7: HTTPS download succeed 2022-08-02T02:14:27 prefetch.2.10.7: 1) 'SRR15888028' was downloaded successfully 2022-08-02T02:14:27 prefetch.2.10.7: 'SRR15888028' has 0 unresolved dependencies Read 37674120 spots for SRR15888028/SRR15888028.sra Written 37674120 spots for SRR15888028/SRR15888028.sra fastq に変換しました。 bowtie でマッピング中... Your job 16437256 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:53:53 37674120 reads; of these: 37674120 (100.00%) were paired; of these: 11632931 (30.88%) aligned concordantly 0 times 22570323 (59.91%) aligned concordantly exactly 1 time 3470866 (9.21%) aligned concordantly >1 times ---- 11632931 pairs aligned concordantly 0 times; of these: 4768504 (40.99%) aligned discordantly 1 time ---- 6864427 pairs aligned 0 times concordantly or discordantly; of these: 13728854 mates make up the pairs; of these: 7825643 (57.00%) aligned 0 times 4348053 (31.67%) aligned exactly 1 time 1555158 (11.33%) aligned >1 times 89.61% overall alignment rate Time searching: 00:53:53 Overall time: 00:53:53 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 28 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 4302140 / 30727354 = 0.1400 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 12:33:41: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12178886/SRX12178886.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12178886/SRX12178886.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12178886/SRX12178886.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12178886/SRX12178886.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 12:33:41: #1 read tag files... INFO @ Tue, 02 Aug 2022 12:33:41: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 12:33:47: 1000000 INFO @ Tue, 02 Aug 2022 12:33:52: 2000000 INFO @ Tue, 02 Aug 2022 12:33:58: 3000000 INFO @ Tue, 02 Aug 2022 12:34:04: 4000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 12:34:09: 5000000 INFO @ Tue, 02 Aug 2022 12:34:11: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12178886/SRX12178886.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12178886/SRX12178886.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12178886/SRX12178886.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12178886/SRX12178886.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 12:34:11: #1 read tag files... INFO @ Tue, 02 Aug 2022 12:34:11: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 12:34:15: 6000000 INFO @ Tue, 02 Aug 2022 12:34:16: 1000000 INFO @ Tue, 02 Aug 2022 12:34:21: 7000000 INFO @ Tue, 02 Aug 2022 12:34:22: 2000000 INFO @ Tue, 02 Aug 2022 12:34:27: 8000000 INFO @ Tue, 02 Aug 2022 12:34:27: 3000000 INFO @ Tue, 02 Aug 2022 12:34:32: 4000000 INFO @ Tue, 02 Aug 2022 12:34:33: 9000000 INFO @ Tue, 02 Aug 2022 12:34:38: 5000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 12:34:39: 10000000 INFO @ Tue, 02 Aug 2022 12:34:41: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12178886/SRX12178886.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12178886/SRX12178886.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12178886/SRX12178886.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12178886/SRX12178886.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 12:34:41: #1 read tag files... INFO @ Tue, 02 Aug 2022 12:34:41: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 12:34:43: 6000000 INFO @ Tue, 02 Aug 2022 12:34:45: 11000000 INFO @ Tue, 02 Aug 2022 12:34:48: 1000000 INFO @ Tue, 02 Aug 2022 12:34:49: 7000000 INFO @ Tue, 02 Aug 2022 12:34:52: 12000000 INFO @ Tue, 02 Aug 2022 12:34:54: 8000000 INFO @ Tue, 02 Aug 2022 12:34:55: 2000000 INFO @ Tue, 02 Aug 2022 12:34:58: 13000000 INFO @ Tue, 02 Aug 2022 12:35:00: 9000000 INFO @ Tue, 02 Aug 2022 12:35:01: 3000000 INFO @ Tue, 02 Aug 2022 12:35:05: 14000000 INFO @ Tue, 02 Aug 2022 12:35:06: 10000000 INFO @ Tue, 02 Aug 2022 12:35:08: 4000000 INFO @ Tue, 02 Aug 2022 12:35:12: 15000000 INFO @ Tue, 02 Aug 2022 12:35:12: 11000000 INFO @ Tue, 02 Aug 2022 12:35:15: 5000000 INFO @ Tue, 02 Aug 2022 12:35:17: 12000000 INFO @ Tue, 02 Aug 2022 12:35:19: 16000000 INFO @ Tue, 02 Aug 2022 12:35:22: 6000000 INFO @ Tue, 02 Aug 2022 12:35:24: 13000000 INFO @ Tue, 02 Aug 2022 12:35:26: 17000000 INFO @ Tue, 02 Aug 2022 12:35:30: 14000000 INFO @ Tue, 02 Aug 2022 12:35:30: 7000000 INFO @ Tue, 02 Aug 2022 12:35:33: 18000000 INFO @ Tue, 02 Aug 2022 12:35:35: 15000000 INFO @ Tue, 02 Aug 2022 12:35:37: 8000000 INFO @ Tue, 02 Aug 2022 12:35:40: 19000000 INFO @ Tue, 02 Aug 2022 12:35:41: 16000000 INFO @ Tue, 02 Aug 2022 12:35:45: 9000000 INFO @ Tue, 02 Aug 2022 12:35:47: 20000000 INFO @ Tue, 02 Aug 2022 12:35:47: 17000000 INFO @ Tue, 02 Aug 2022 12:35:52: 10000000 INFO @ Tue, 02 Aug 2022 12:35:53: 18000000 INFO @ Tue, 02 Aug 2022 12:35:54: 21000000 INFO @ Tue, 02 Aug 2022 12:35:59: 19000000 INFO @ Tue, 02 Aug 2022 12:36:00: 11000000 INFO @ Tue, 02 Aug 2022 12:36:01: 22000000 INFO @ Tue, 02 Aug 2022 12:36:05: 20000000 INFO @ Tue, 02 Aug 2022 12:36:08: 12000000 INFO @ Tue, 02 Aug 2022 12:36:09: 23000000 INFO @ Tue, 02 Aug 2022 12:36:11: 21000000 INFO @ Tue, 02 Aug 2022 12:36:15: 13000000 INFO @ Tue, 02 Aug 2022 12:36:17: 24000000 INFO @ Tue, 02 Aug 2022 12:36:17: 22000000 INFO @ Tue, 02 Aug 2022 12:36:23: 14000000 INFO @ Tue, 02 Aug 2022 12:36:23: 23000000 INFO @ Tue, 02 Aug 2022 12:36:24: 25000000 INFO @ Tue, 02 Aug 2022 12:36:30: 24000000 INFO @ Tue, 02 Aug 2022 12:36:31: 15000000 INFO @ Tue, 02 Aug 2022 12:36:32: 26000000 INFO @ Tue, 02 Aug 2022 12:36:37: 25000000 INFO @ Tue, 02 Aug 2022 12:36:38: 16000000 INFO @ Tue, 02 Aug 2022 12:36:40: 27000000 INFO @ Tue, 02 Aug 2022 12:36:44: 26000000 INFO @ Tue, 02 Aug 2022 12:36:46: 17000000 INFO @ Tue, 02 Aug 2022 12:36:47: 28000000 INFO @ Tue, 02 Aug 2022 12:36:50: 27000000 INFO @ Tue, 02 Aug 2022 12:36:54: 18000000 INFO @ Tue, 02 Aug 2022 12:36:55: 29000000 INFO @ Tue, 02 Aug 2022 12:36:57: 28000000 INFO @ Tue, 02 Aug 2022 12:37:02: 19000000 INFO @ Tue, 02 Aug 2022 12:37:03: 30000000 INFO @ Tue, 02 Aug 2022 12:37:04: 29000000 INFO @ Tue, 02 Aug 2022 12:37:10: 20000000 INFO @ Tue, 02 Aug 2022 12:37:11: 30000000 INFO @ Tue, 02 Aug 2022 12:37:11: 31000000 INFO @ Tue, 02 Aug 2022 12:37:18: 31000000 INFO @ Tue, 02 Aug 2022 12:37:18: 21000000 INFO @ Tue, 02 Aug 2022 12:37:20: 32000000 INFO @ Tue, 02 Aug 2022 12:37:25: 32000000 INFO @ Tue, 02 Aug 2022 12:37:27: 22000000 INFO @ Tue, 02 Aug 2022 12:37:28: 33000000 INFO @ Tue, 02 Aug 2022 12:37:32: 33000000 INFO @ Tue, 02 Aug 2022 12:37:35: 23000000 INFO @ Tue, 02 Aug 2022 12:37:36: 34000000 INFO @ Tue, 02 Aug 2022 12:37:39: 34000000 INFO @ Tue, 02 Aug 2022 12:37:43: 24000000 INFO @ Tue, 02 Aug 2022 12:37:44: 35000000 INFO @ Tue, 02 Aug 2022 12:37:46: 35000000 INFO @ Tue, 02 Aug 2022 12:37:51: 25000000 INFO @ Tue, 02 Aug 2022 12:37:52: 36000000 INFO @ Tue, 02 Aug 2022 12:37:53: 36000000 INFO @ Tue, 02 Aug 2022 12:38:00: 26000000 INFO @ Tue, 02 Aug 2022 12:38:00: 37000000 INFO @ Tue, 02 Aug 2022 12:38:00: 37000000 INFO @ Tue, 02 Aug 2022 12:38:07: 38000000 INFO @ Tue, 02 Aug 2022 12:38:08: 27000000 INFO @ Tue, 02 Aug 2022 12:38:08: 38000000 INFO @ Tue, 02 Aug 2022 12:38:15: 39000000 INFO @ Tue, 02 Aug 2022 12:38:16: 28000000 INFO @ Tue, 02 Aug 2022 12:38:17: 39000000 INFO @ Tue, 02 Aug 2022 12:38:21: 40000000 INFO @ Tue, 02 Aug 2022 12:38:25: 29000000 INFO @ Tue, 02 Aug 2022 12:38:25: 40000000 INFO @ Tue, 02 Aug 2022 12:38:29: 41000000 INFO @ Tue, 02 Aug 2022 12:38:33: 30000000 INFO @ Tue, 02 Aug 2022 12:38:34: 41000000 INFO @ Tue, 02 Aug 2022 12:38:36: 42000000 INFO @ Tue, 02 Aug 2022 12:38:42: 31000000 INFO @ Tue, 02 Aug 2022 12:38:42: 42000000 INFO @ Tue, 02 Aug 2022 12:38:44: 43000000 INFO @ Tue, 02 Aug 2022 12:38:50: 43000000 INFO @ Tue, 02 Aug 2022 12:38:51: 32000000 INFO @ Tue, 02 Aug 2022 12:38:52: 44000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 02 Aug 2022 12:38:59: 44000000 INFO @ Tue, 02 Aug 2022 12:39:00: 45000000 INFO @ Tue, 02 Aug 2022 12:39:00: 33000000 INFO @ Tue, 02 Aug 2022 12:39:07: 46000000 INFO @ Tue, 02 Aug 2022 12:39:07: 45000000 INFO @ Tue, 02 Aug 2022 12:39:08: 34000000 INFO @ Tue, 02 Aug 2022 12:39:15: 47000000 INFO @ Tue, 02 Aug 2022 12:39:16: 46000000 INFO @ Tue, 02 Aug 2022 12:39:17: 35000000 INFO @ Tue, 02 Aug 2022 12:39:22: 48000000 INFO @ Tue, 02 Aug 2022 12:39:24: 47000000 INFO @ Tue, 02 Aug 2022 12:39:26: 36000000 INFO @ Tue, 02 Aug 2022 12:39:30: 49000000 INFO @ Tue, 02 Aug 2022 12:39:33: 48000000 INFO @ Tue, 02 Aug 2022 12:39:34: 37000000 INFO @ Tue, 02 Aug 2022 12:39:38: 50000000 INFO @ Tue, 02 Aug 2022 12:39:42: 49000000 INFO @ Tue, 02 Aug 2022 12:39:43: 38000000 INFO @ Tue, 02 Aug 2022 12:39:46: 51000000 INFO @ Tue, 02 Aug 2022 12:39:51: 50000000 INFO @ Tue, 02 Aug 2022 12:39:52: 39000000 INFO @ Tue, 02 Aug 2022 12:39:54: 52000000 INFO @ Tue, 02 Aug 2022 12:39:59: 51000000 INFO @ Tue, 02 Aug 2022 12:40:00: 40000000 INFO @ Tue, 02 Aug 2022 12:40:02: 53000000 INFO @ Tue, 02 Aug 2022 12:40:08: 52000000 INFO @ Tue, 02 Aug 2022 12:40:09: 41000000 INFO @ Tue, 02 Aug 2022 12:40:10: 54000000 INFO @ Tue, 02 Aug 2022 12:40:16: 53000000 INFO @ Tue, 02 Aug 2022 12:40:17: 42000000 INFO @ Tue, 02 Aug 2022 12:40:19: 55000000 BigWig に変換しました。 INFO @ Tue, 02 Aug 2022 12:40:25: 54000000 INFO @ Tue, 02 Aug 2022 12:40:25: 43000000 INFO @ Tue, 02 Aug 2022 12:40:28: 56000000 INFO @ Tue, 02 Aug 2022 12:40:33: 55000000 INFO @ Tue, 02 Aug 2022 12:40:34: 44000000 INFO @ Tue, 02 Aug 2022 12:40:36: 57000000 INFO @ Tue, 02 Aug 2022 12:40:41: 56000000 INFO @ Tue, 02 Aug 2022 12:40:42: 45000000 INFO @ Tue, 02 Aug 2022 12:40:44: 58000000 INFO @ Tue, 02 Aug 2022 12:40:50: 57000000 INFO @ Tue, 02 Aug 2022 12:40:51: 46000000 INFO @ Tue, 02 Aug 2022 12:40:54: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 12:40:54: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 12:40:54: #1 total tags in treatment: 22144703 INFO @ Tue, 02 Aug 2022 12:40:54: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 12:40:54: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 12:40:54: #1 tags after filtering in treatment: 14286077 INFO @ Tue, 02 Aug 2022 12:40:54: #1 Redundant rate of treatment: 0.35 INFO @ Tue, 02 Aug 2022 12:40:54: #1 finished! INFO @ Tue, 02 Aug 2022 12:40:54: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 12:40:54: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 12:40:55: #2 number of paired peaks: 1492 INFO @ Tue, 02 Aug 2022 12:40:55: start model_add_line... INFO @ Tue, 02 Aug 2022 12:40:55: start X-correlation... INFO @ Tue, 02 Aug 2022 12:40:56: end of X-cor INFO @ Tue, 02 Aug 2022 12:40:56: #2 finished! INFO @ Tue, 02 Aug 2022 12:40:56: #2 predicted fragment length is 69 bps INFO @ Tue, 02 Aug 2022 12:40:56: #2 alternative fragment length(s) may be 4,69 bps INFO @ Tue, 02 Aug 2022 12:40:56: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12178886/SRX12178886.10_model.r WARNING @ Tue, 02 Aug 2022 12:40:56: #2 Since the d (69) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 12:40:56: #2 You may need to consider one of the other alternative d(s): 4,69 WARNING @ Tue, 02 Aug 2022 12:40:56: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 12:40:56: #3 Call peaks... INFO @ Tue, 02 Aug 2022 12:40:56: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 12:40:59: 58000000 INFO @ Tue, 02 Aug 2022 12:40:59: 47000000 INFO @ Tue, 02 Aug 2022 12:41:07: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 12:41:07: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 12:41:07: #1 total tags in treatment: 22144703 INFO @ Tue, 02 Aug 2022 12:41:07: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 12:41:07: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 12:41:07: #1 tags after filtering in treatment: 14286077 INFO @ Tue, 02 Aug 2022 12:41:07: #1 Redundant rate of treatment: 0.35 INFO @ Tue, 02 Aug 2022 12:41:07: #1 finished! INFO @ Tue, 02 Aug 2022 12:41:07: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 12:41:07: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 12:41:08: 48000000 INFO @ Tue, 02 Aug 2022 12:41:09: #2 number of paired peaks: 1492 INFO @ Tue, 02 Aug 2022 12:41:09: start model_add_line... INFO @ Tue, 02 Aug 2022 12:41:09: start X-correlation... INFO @ Tue, 02 Aug 2022 12:41:09: end of X-cor INFO @ Tue, 02 Aug 2022 12:41:09: #2 finished! INFO @ Tue, 02 Aug 2022 12:41:09: #2 predicted fragment length is 69 bps INFO @ Tue, 02 Aug 2022 12:41:09: #2 alternative fragment length(s) may be 4,69 bps INFO @ Tue, 02 Aug 2022 12:41:09: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12178886/SRX12178886.05_model.r WARNING @ Tue, 02 Aug 2022 12:41:09: #2 Since the d (69) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 12:41:09: #2 You may need to consider one of the other alternative d(s): 4,69 WARNING @ Tue, 02 Aug 2022 12:41:09: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 12:41:09: #3 Call peaks... INFO @ Tue, 02 Aug 2022 12:41:09: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 12:41:17: 49000000 INFO @ Tue, 02 Aug 2022 12:41:25: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 12:41:27: 50000000 INFO @ Tue, 02 Aug 2022 12:41:37: 51000000 INFO @ Tue, 02 Aug 2022 12:41:38: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 12:41:41: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12178886/SRX12178886.10_peaks.xls INFO @ Tue, 02 Aug 2022 12:41:41: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12178886/SRX12178886.10_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 12:41:41: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12178886/SRX12178886.10_summits.bed INFO @ Tue, 02 Aug 2022 12:41:41: Done! pass1 - making usageList (14 chroms): 2 millis pass2 - checking and writing primary data (10160 records, 4 fields): 35 millis CompletedMACS2peakCalling INFO @ Tue, 02 Aug 2022 12:41:45: 52000000 INFO @ Tue, 02 Aug 2022 12:41:53: 53000000 INFO @ Tue, 02 Aug 2022 12:41:55: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12178886/SRX12178886.05_peaks.xls INFO @ Tue, 02 Aug 2022 12:41:55: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12178886/SRX12178886.05_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 12:41:55: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12178886/SRX12178886.05_summits.bed INFO @ Tue, 02 Aug 2022 12:41:55: Done! pass1 - making usageList (15 chroms): 4 millis pass2 - checking and writing primary data (19985 records, 4 fields): 91 millis CompletedMACS2peakCalling INFO @ Tue, 02 Aug 2022 12:42:02: 54000000 INFO @ Tue, 02 Aug 2022 12:42:10: 55000000 INFO @ Tue, 02 Aug 2022 12:42:18: 56000000 INFO @ Tue, 02 Aug 2022 12:42:27: 57000000 INFO @ Tue, 02 Aug 2022 12:42:35: 58000000 INFO @ Tue, 02 Aug 2022 12:42:43: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 12:42:43: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 12:42:43: #1 total tags in treatment: 22144703 INFO @ Tue, 02 Aug 2022 12:42:43: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 12:42:43: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 12:42:43: #1 tags after filtering in treatment: 14286077 INFO @ Tue, 02 Aug 2022 12:42:43: #1 Redundant rate of treatment: 0.35 INFO @ Tue, 02 Aug 2022 12:42:43: #1 finished! INFO @ Tue, 02 Aug 2022 12:42:43: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 12:42:43: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 12:42:44: #2 number of paired peaks: 1492 INFO @ Tue, 02 Aug 2022 12:42:44: start model_add_line... INFO @ Tue, 02 Aug 2022 12:42:44: start X-correlation... INFO @ Tue, 02 Aug 2022 12:42:44: end of X-cor INFO @ Tue, 02 Aug 2022 12:42:44: #2 finished! INFO @ Tue, 02 Aug 2022 12:42:44: #2 predicted fragment length is 69 bps INFO @ Tue, 02 Aug 2022 12:42:44: #2 alternative fragment length(s) may be 4,69 bps INFO @ Tue, 02 Aug 2022 12:42:44: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12178886/SRX12178886.20_model.r WARNING @ Tue, 02 Aug 2022 12:42:44: #2 Since the d (69) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 12:42:44: #2 You may need to consider one of the other alternative d(s): 4,69 WARNING @ Tue, 02 Aug 2022 12:42:44: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 12:42:44: #3 Call peaks... INFO @ Tue, 02 Aug 2022 12:42:44: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 12:43:12: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 12:43:28: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12178886/SRX12178886.20_peaks.xls INFO @ Tue, 02 Aug 2022 12:43:28: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12178886/SRX12178886.20_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 12:43:28: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12178886/SRX12178886.20_summits.bed INFO @ Tue, 02 Aug 2022 12:43:28: Done! pass1 - making usageList (13 chroms): 1 millis pass2 - checking and writing primary data (1655 records, 4 fields): 32 millis CompletedMACS2peakCalling