Job ID = 16436254 SRX = SRX12178885 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2022-08-02T02:12:37 prefetch.2.10.7: 1) Downloading 'SRR15888029'... 2022-08-02T02:12:37 prefetch.2.10.7: Downloading via HTTPS... 2022-08-02T02:15:39 prefetch.2.10.7: HTTPS download succeed 2022-08-02T02:15:39 prefetch.2.10.7: 1) 'SRR15888029' was downloaded successfully 2022-08-02T02:15:39 prefetch.2.10.7: 'SRR15888029' has 0 unresolved dependencies Read 59319273 spots for SRR15888029/SRR15888029.sra Written 59319273 spots for SRR15888029/SRR15888029.sra fastq に変換しました。 bowtie でマッピング中... Your job 16437442 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:01:11 59319273 reads; of these: 59319273 (100.00%) were paired; of these: 19325449 (32.58%) aligned concordantly 0 times 28494353 (48.04%) aligned concordantly exactly 1 time 11499471 (19.39%) aligned concordantly >1 times ---- 19325449 pairs aligned concordantly 0 times; of these: 7549343 (39.06%) aligned discordantly 1 time ---- 11776106 pairs aligned 0 times concordantly or discordantly; of these: 23552212 mates make up the pairs; of these: 13095800 (55.60%) aligned 0 times 6835817 (29.02%) aligned exactly 1 time 3620595 (15.37%) aligned >1 times 88.96% overall alignment rate Time searching: 01:01:11 Overall time: 01:01:11 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 44 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 11233873 / 47398784 = 0.2370 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 12:48:09: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12178885/SRX12178885.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12178885/SRX12178885.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12178885/SRX12178885.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12178885/SRX12178885.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 12:48:09: #1 read tag files... INFO @ Tue, 02 Aug 2022 12:48:09: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 12:48:14: 1000000 INFO @ Tue, 02 Aug 2022 12:48:18: 2000000 INFO @ Tue, 02 Aug 2022 12:48:23: 3000000 INFO @ Tue, 02 Aug 2022 12:48:27: 4000000 INFO @ Tue, 02 Aug 2022 12:48:32: 5000000 INFO @ Tue, 02 Aug 2022 12:48:37: 6000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 12:48:39: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12178885/SRX12178885.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12178885/SRX12178885.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12178885/SRX12178885.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12178885/SRX12178885.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 12:48:39: #1 read tag files... INFO @ Tue, 02 Aug 2022 12:48:39: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 12:48:41: 7000000 INFO @ Tue, 02 Aug 2022 12:48:43: 1000000 INFO @ Tue, 02 Aug 2022 12:48:46: 8000000 INFO @ Tue, 02 Aug 2022 12:48:48: 2000000 INFO @ Tue, 02 Aug 2022 12:48:51: 9000000 INFO @ Tue, 02 Aug 2022 12:48:52: 3000000 INFO @ Tue, 02 Aug 2022 12:48:56: 10000000 INFO @ Tue, 02 Aug 2022 12:48:57: 4000000 INFO @ Tue, 02 Aug 2022 12:49:01: 11000000 INFO @ Tue, 02 Aug 2022 12:49:02: 5000000 INFO @ Tue, 02 Aug 2022 12:49:06: 12000000 INFO @ Tue, 02 Aug 2022 12:49:06: 6000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 12:49:09: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12178885/SRX12178885.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12178885/SRX12178885.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12178885/SRX12178885.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12178885/SRX12178885.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 12:49:09: #1 read tag files... INFO @ Tue, 02 Aug 2022 12:49:09: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 12:49:11: 7000000 INFO @ Tue, 02 Aug 2022 12:49:11: 13000000 INFO @ Tue, 02 Aug 2022 12:49:14: 1000000 INFO @ Tue, 02 Aug 2022 12:49:16: 8000000 INFO @ Tue, 02 Aug 2022 12:49:17: 14000000 INFO @ Tue, 02 Aug 2022 12:49:19: 2000000 INFO @ Tue, 02 Aug 2022 12:49:21: 9000000 INFO @ Tue, 02 Aug 2022 12:49:22: 15000000 INFO @ Tue, 02 Aug 2022 12:49:25: 3000000 INFO @ Tue, 02 Aug 2022 12:49:26: 10000000 INFO @ Tue, 02 Aug 2022 12:49:27: 16000000 INFO @ Tue, 02 Aug 2022 12:49:30: 4000000 INFO @ Tue, 02 Aug 2022 12:49:31: 11000000 INFO @ Tue, 02 Aug 2022 12:49:32: 17000000 INFO @ Tue, 02 Aug 2022 12:49:35: 12000000 INFO @ Tue, 02 Aug 2022 12:49:36: 5000000 INFO @ Tue, 02 Aug 2022 12:49:38: 18000000 INFO @ Tue, 02 Aug 2022 12:49:40: 13000000 INFO @ Tue, 02 Aug 2022 12:49:41: 6000000 INFO @ Tue, 02 Aug 2022 12:49:43: 19000000 INFO @ Tue, 02 Aug 2022 12:49:45: 14000000 INFO @ Tue, 02 Aug 2022 12:49:47: 7000000 INFO @ Tue, 02 Aug 2022 12:49:48: 20000000 INFO @ Tue, 02 Aug 2022 12:49:50: 15000000 INFO @ Tue, 02 Aug 2022 12:49:52: 8000000 INFO @ Tue, 02 Aug 2022 12:49:54: 21000000 INFO @ Tue, 02 Aug 2022 12:49:55: 16000000 INFO @ Tue, 02 Aug 2022 12:49:58: 9000000 INFO @ Tue, 02 Aug 2022 12:49:59: 22000000 INFO @ Tue, 02 Aug 2022 12:50:00: 17000000 INFO @ Tue, 02 Aug 2022 12:50:03: 10000000 INFO @ Tue, 02 Aug 2022 12:50:04: 23000000 INFO @ Tue, 02 Aug 2022 12:50:05: 18000000 INFO @ Tue, 02 Aug 2022 12:50:09: 11000000 INFO @ Tue, 02 Aug 2022 12:50:09: 24000000 INFO @ Tue, 02 Aug 2022 12:50:10: 19000000 INFO @ Tue, 02 Aug 2022 12:50:14: 25000000 INFO @ Tue, 02 Aug 2022 12:50:14: 20000000 INFO @ Tue, 02 Aug 2022 12:50:15: 12000000 INFO @ Tue, 02 Aug 2022 12:50:19: 21000000 INFO @ Tue, 02 Aug 2022 12:50:19: 26000000 INFO @ Tue, 02 Aug 2022 12:50:20: 13000000 INFO @ Tue, 02 Aug 2022 12:50:24: 22000000 INFO @ Tue, 02 Aug 2022 12:50:24: 27000000 INFO @ Tue, 02 Aug 2022 12:50:25: 14000000 INFO @ Tue, 02 Aug 2022 12:50:29: 23000000 INFO @ Tue, 02 Aug 2022 12:50:30: 28000000 INFO @ Tue, 02 Aug 2022 12:50:31: 15000000 INFO @ Tue, 02 Aug 2022 12:50:33: 24000000 INFO @ Tue, 02 Aug 2022 12:50:35: 29000000 INFO @ Tue, 02 Aug 2022 12:50:36: 16000000 INFO @ Tue, 02 Aug 2022 12:50:38: 25000000 INFO @ Tue, 02 Aug 2022 12:50:40: 30000000 INFO @ Tue, 02 Aug 2022 12:50:41: 17000000 INFO @ Tue, 02 Aug 2022 12:50:43: 26000000 INFO @ Tue, 02 Aug 2022 12:50:46: 31000000 INFO @ Tue, 02 Aug 2022 12:50:47: 18000000 INFO @ Tue, 02 Aug 2022 12:50:48: 27000000 INFO @ Tue, 02 Aug 2022 12:50:51: 32000000 INFO @ Tue, 02 Aug 2022 12:50:52: 19000000 INFO @ Tue, 02 Aug 2022 12:50:53: 28000000 INFO @ Tue, 02 Aug 2022 12:50:56: 33000000 INFO @ Tue, 02 Aug 2022 12:50:57: 29000000 INFO @ Tue, 02 Aug 2022 12:50:57: 20000000 INFO @ Tue, 02 Aug 2022 12:51:02: 34000000 INFO @ Tue, 02 Aug 2022 12:51:02: 30000000 INFO @ Tue, 02 Aug 2022 12:51:03: 21000000 INFO @ Tue, 02 Aug 2022 12:51:07: 35000000 INFO @ Tue, 02 Aug 2022 12:51:07: 31000000 INFO @ Tue, 02 Aug 2022 12:51:08: 22000000 INFO @ Tue, 02 Aug 2022 12:51:12: 32000000 INFO @ Tue, 02 Aug 2022 12:51:12: 36000000 INFO @ Tue, 02 Aug 2022 12:51:13: 23000000 INFO @ Tue, 02 Aug 2022 12:51:17: 33000000 INFO @ Tue, 02 Aug 2022 12:51:17: 37000000 INFO @ Tue, 02 Aug 2022 12:51:19: 24000000 INFO @ Tue, 02 Aug 2022 12:51:22: 34000000 INFO @ Tue, 02 Aug 2022 12:51:22: 38000000 INFO @ Tue, 02 Aug 2022 12:51:24: 25000000 INFO @ Tue, 02 Aug 2022 12:51:27: 35000000 INFO @ Tue, 02 Aug 2022 12:51:28: 39000000 INFO @ Tue, 02 Aug 2022 12:51:30: 26000000 INFO @ Tue, 02 Aug 2022 12:51:32: 36000000 INFO @ Tue, 02 Aug 2022 12:51:33: 40000000 INFO @ Tue, 02 Aug 2022 12:51:35: 27000000 INFO @ Tue, 02 Aug 2022 12:51:37: 37000000 INFO @ Tue, 02 Aug 2022 12:51:38: 41000000 INFO @ Tue, 02 Aug 2022 12:51:40: 28000000 INFO @ Tue, 02 Aug 2022 12:51:42: 38000000 INFO @ Tue, 02 Aug 2022 12:51:43: 42000000 INFO @ Tue, 02 Aug 2022 12:51:45: 29000000 INFO @ Tue, 02 Aug 2022 12:51:48: 39000000 INFO @ Tue, 02 Aug 2022 12:51:48: 43000000 INFO @ Tue, 02 Aug 2022 12:51:50: 30000000 INFO @ Tue, 02 Aug 2022 12:51:53: 40000000 INFO @ Tue, 02 Aug 2022 12:51:54: 44000000 INFO @ Tue, 02 Aug 2022 12:51:56: 31000000 INFO @ Tue, 02 Aug 2022 12:51:58: 41000000 INFO @ Tue, 02 Aug 2022 12:51:59: 45000000 INFO @ Tue, 02 Aug 2022 12:52:01: 32000000 INFO @ Tue, 02 Aug 2022 12:52:03: 42000000 INFO @ Tue, 02 Aug 2022 12:52:04: 46000000 INFO @ Tue, 02 Aug 2022 12:52:07: 33000000 INFO @ Tue, 02 Aug 2022 12:52:08: 43000000 INFO @ Tue, 02 Aug 2022 12:52:09: 47000000 INFO @ Tue, 02 Aug 2022 12:52:12: 34000000 INFO @ Tue, 02 Aug 2022 12:52:13: 44000000 INFO @ Tue, 02 Aug 2022 12:52:14: 48000000 INFO @ Tue, 02 Aug 2022 12:52:17: 35000000 INFO @ Tue, 02 Aug 2022 12:52:18: 45000000 INFO @ Tue, 02 Aug 2022 12:52:20: 49000000 INFO @ Tue, 02 Aug 2022 12:52:22: 36000000 INFO @ Tue, 02 Aug 2022 12:52:24: 46000000 INFO @ Tue, 02 Aug 2022 12:52:25: 50000000 INFO @ Tue, 02 Aug 2022 12:52:27: 37000000 INFO @ Tue, 02 Aug 2022 12:52:29: 47000000 INFO @ Tue, 02 Aug 2022 12:52:30: 51000000 INFO @ Tue, 02 Aug 2022 12:52:32: 38000000 INFO @ Tue, 02 Aug 2022 12:52:34: 48000000 INFO @ Tue, 02 Aug 2022 12:52:35: 52000000 INFO @ Tue, 02 Aug 2022 12:52:37: 39000000 INFO @ Tue, 02 Aug 2022 12:52:39: 49000000 INFO @ Tue, 02 Aug 2022 12:52:40: 53000000 INFO @ Tue, 02 Aug 2022 12:52:42: 40000000 INFO @ Tue, 02 Aug 2022 12:52:44: 50000000 INFO @ Tue, 02 Aug 2022 12:52:46: 54000000 INFO @ Tue, 02 Aug 2022 12:52:47: 41000000 INFO @ Tue, 02 Aug 2022 12:52:49: 51000000 INFO @ Tue, 02 Aug 2022 12:52:51: 55000000 INFO @ Tue, 02 Aug 2022 12:52:52: 42000000 INFO @ Tue, 02 Aug 2022 12:52:55: 52000000 INFO @ Tue, 02 Aug 2022 12:52:56: 56000000 INFO @ Tue, 02 Aug 2022 12:52:57: 43000000 INFO @ Tue, 02 Aug 2022 12:53:00: 53000000 INFO @ Tue, 02 Aug 2022 12:53:01: 57000000 INFO @ Tue, 02 Aug 2022 12:53:02: 44000000 INFO @ Tue, 02 Aug 2022 12:53:05: 54000000 INFO @ Tue, 02 Aug 2022 12:53:07: 58000000 INFO @ Tue, 02 Aug 2022 12:53:07: 45000000 INFO @ Tue, 02 Aug 2022 12:53:10: 55000000 INFO @ Tue, 02 Aug 2022 12:53:12: 46000000 INFO @ Tue, 02 Aug 2022 12:53:12: 59000000 INFO @ Tue, 02 Aug 2022 12:53:15: 56000000 INFO @ Tue, 02 Aug 2022 12:53:17: 47000000 INFO @ Tue, 02 Aug 2022 12:53:17: 60000000 INFO @ Tue, 02 Aug 2022 12:53:21: 57000000 INFO @ Tue, 02 Aug 2022 12:53:22: 48000000 INFO @ Tue, 02 Aug 2022 12:53:22: 61000000 INFO @ Tue, 02 Aug 2022 12:53:26: 58000000 INFO @ Tue, 02 Aug 2022 12:53:27: 49000000 INFO @ Tue, 02 Aug 2022 12:53:27: 62000000 INFO @ Tue, 02 Aug 2022 12:53:31: 59000000 INFO @ Tue, 02 Aug 2022 12:53:32: 50000000 INFO @ Tue, 02 Aug 2022 12:53:32: 63000000 INFO @ Tue, 02 Aug 2022 12:53:36: 60000000 INFO @ Tue, 02 Aug 2022 12:53:37: 51000000 INFO @ Tue, 02 Aug 2022 12:53:37: 64000000 INFO @ Tue, 02 Aug 2022 12:53:41: 61000000 INFO @ Tue, 02 Aug 2022 12:53:42: 52000000 INFO @ Tue, 02 Aug 2022 12:53:43: 65000000 INFO @ Tue, 02 Aug 2022 12:53:46: 62000000 INFO @ Tue, 02 Aug 2022 12:53:47: 53000000 INFO @ Tue, 02 Aug 2022 12:53:48: 66000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 02 Aug 2022 12:53:51: 63000000 INFO @ Tue, 02 Aug 2022 12:53:52: 54000000 INFO @ Tue, 02 Aug 2022 12:53:53: 67000000 INFO @ Tue, 02 Aug 2022 12:53:56: 64000000 INFO @ Tue, 02 Aug 2022 12:53:57: 55000000 INFO @ Tue, 02 Aug 2022 12:53:58: 68000000 INFO @ Tue, 02 Aug 2022 12:54:02: 65000000 INFO @ Tue, 02 Aug 2022 12:54:02: 56000000 INFO @ Tue, 02 Aug 2022 12:54:04: 69000000 INFO @ Tue, 02 Aug 2022 12:54:07: 66000000 INFO @ Tue, 02 Aug 2022 12:54:07: 57000000 INFO @ Tue, 02 Aug 2022 12:54:09: 70000000 INFO @ Tue, 02 Aug 2022 12:54:12: 67000000 INFO @ Tue, 02 Aug 2022 12:54:13: 58000000 INFO @ Tue, 02 Aug 2022 12:54:14: 71000000 INFO @ Tue, 02 Aug 2022 12:54:17: 68000000 INFO @ Tue, 02 Aug 2022 12:54:18: 59000000 INFO @ Tue, 02 Aug 2022 12:54:19: 72000000 INFO @ Tue, 02 Aug 2022 12:54:23: 60000000 INFO @ Tue, 02 Aug 2022 12:54:23: 69000000 INFO @ Tue, 02 Aug 2022 12:54:25: 73000000 INFO @ Tue, 02 Aug 2022 12:54:28: 61000000 INFO @ Tue, 02 Aug 2022 12:54:28: 70000000 INFO @ Tue, 02 Aug 2022 12:54:30: 74000000 INFO @ Tue, 02 Aug 2022 12:54:33: 62000000 INFO @ Tue, 02 Aug 2022 12:54:33: 71000000 INFO @ Tue, 02 Aug 2022 12:54:35: 75000000 INFO @ Tue, 02 Aug 2022 12:54:38: 63000000 INFO @ Tue, 02 Aug 2022 12:54:38: 72000000 INFO @ Tue, 02 Aug 2022 12:54:41: 76000000 INFO @ Tue, 02 Aug 2022 12:54:43: 64000000 INFO @ Tue, 02 Aug 2022 12:54:43: 73000000 INFO @ Tue, 02 Aug 2022 12:54:46: 77000000 INFO @ Tue, 02 Aug 2022 12:54:48: 65000000 INFO @ Tue, 02 Aug 2022 12:54:48: 74000000 INFO @ Tue, 02 Aug 2022 12:54:51: 78000000 INFO @ Tue, 02 Aug 2022 12:54:53: 75000000 INFO @ Tue, 02 Aug 2022 12:54:53: 66000000 INFO @ Tue, 02 Aug 2022 12:54:57: 79000000 INFO @ Tue, 02 Aug 2022 12:54:59: 67000000 INFO @ Tue, 02 Aug 2022 12:54:59: 76000000 INFO @ Tue, 02 Aug 2022 12:55:02: 80000000 INFO @ Tue, 02 Aug 2022 12:55:04: 68000000 INFO @ Tue, 02 Aug 2022 12:55:04: 77000000 INFO @ Tue, 02 Aug 2022 12:55:07: 81000000 INFO @ Tue, 02 Aug 2022 12:55:09: 69000000 INFO @ Tue, 02 Aug 2022 12:55:09: 78000000 INFO @ Tue, 02 Aug 2022 12:55:12: 82000000 INFO @ Tue, 02 Aug 2022 12:55:14: 70000000 INFO @ Tue, 02 Aug 2022 12:55:14: 79000000 INFO @ Tue, 02 Aug 2022 12:55:17: 83000000 INFO @ Tue, 02 Aug 2022 12:55:18: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 12:55:18: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 12:55:18: #1 total tags in treatment: 29539584 INFO @ Tue, 02 Aug 2022 12:55:18: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 12:55:18: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 12:55:19: #1 tags after filtering in treatment: 20297248 INFO @ Tue, 02 Aug 2022 12:55:19: #1 Redundant rate of treatment: 0.31 INFO @ Tue, 02 Aug 2022 12:55:19: #1 finished! INFO @ Tue, 02 Aug 2022 12:55:19: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 12:55:19: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 12:55:19: 71000000 INFO @ Tue, 02 Aug 2022 12:55:19: 80000000 BigWig に変換しました。 INFO @ Tue, 02 Aug 2022 12:55:20: #2 number of paired peaks: 110 WARNING @ Tue, 02 Aug 2022 12:55:20: Fewer paired peaks (110) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 110 pairs to build model! INFO @ Tue, 02 Aug 2022 12:55:20: start model_add_line... INFO @ Tue, 02 Aug 2022 12:55:20: start X-correlation... INFO @ Tue, 02 Aug 2022 12:55:20: end of X-cor INFO @ Tue, 02 Aug 2022 12:55:20: #2 finished! INFO @ Tue, 02 Aug 2022 12:55:20: #2 predicted fragment length is 92 bps INFO @ Tue, 02 Aug 2022 12:55:20: #2 alternative fragment length(s) may be 3,92,119,126,131,567,592 bps INFO @ Tue, 02 Aug 2022 12:55:20: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12178885/SRX12178885.05_model.r WARNING @ Tue, 02 Aug 2022 12:55:20: #2 Since the d (92) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 12:55:20: #2 You may need to consider one of the other alternative d(s): 3,92,119,126,131,567,592 WARNING @ Tue, 02 Aug 2022 12:55:20: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 12:55:20: #3 Call peaks... INFO @ Tue, 02 Aug 2022 12:55:20: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 12:55:24: 72000000 INFO @ Tue, 02 Aug 2022 12:55:24: 81000000 INFO @ Tue, 02 Aug 2022 12:55:29: 73000000 INFO @ Tue, 02 Aug 2022 12:55:29: 82000000 INFO @ Tue, 02 Aug 2022 12:55:34: 74000000 INFO @ Tue, 02 Aug 2022 12:55:34: 83000000 INFO @ Tue, 02 Aug 2022 12:55:35: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 12:55:35: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 12:55:35: #1 total tags in treatment: 29539584 INFO @ Tue, 02 Aug 2022 12:55:35: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 12:55:35: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 12:55:36: #1 tags after filtering in treatment: 20297248 INFO @ Tue, 02 Aug 2022 12:55:36: #1 Redundant rate of treatment: 0.31 INFO @ Tue, 02 Aug 2022 12:55:36: #1 finished! INFO @ Tue, 02 Aug 2022 12:55:36: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 12:55:36: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 12:55:37: #2 number of paired peaks: 110 WARNING @ Tue, 02 Aug 2022 12:55:37: Fewer paired peaks (110) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 110 pairs to build model! INFO @ Tue, 02 Aug 2022 12:55:37: start model_add_line... INFO @ Tue, 02 Aug 2022 12:55:37: start X-correlation... INFO @ Tue, 02 Aug 2022 12:55:37: end of X-cor INFO @ Tue, 02 Aug 2022 12:55:37: #2 finished! INFO @ Tue, 02 Aug 2022 12:55:37: #2 predicted fragment length is 92 bps INFO @ Tue, 02 Aug 2022 12:55:37: #2 alternative fragment length(s) may be 3,92,119,126,131,567,592 bps INFO @ Tue, 02 Aug 2022 12:55:37: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12178885/SRX12178885.10_model.r WARNING @ Tue, 02 Aug 2022 12:55:37: #2 Since the d (92) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 12:55:37: #2 You may need to consider one of the other alternative d(s): 3,92,119,126,131,567,592 WARNING @ Tue, 02 Aug 2022 12:55:37: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 12:55:37: #3 Call peaks... INFO @ Tue, 02 Aug 2022 12:55:37: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 12:55:39: 75000000 INFO @ Tue, 02 Aug 2022 12:55:44: 76000000 INFO @ Tue, 02 Aug 2022 12:55:48: 77000000 INFO @ Tue, 02 Aug 2022 12:55:53: 78000000 INFO @ Tue, 02 Aug 2022 12:55:56: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 12:55:58: 79000000 INFO @ Tue, 02 Aug 2022 12:56:03: 80000000 INFO @ Tue, 02 Aug 2022 12:56:07: 81000000 INFO @ Tue, 02 Aug 2022 12:56:12: 82000000 INFO @ Tue, 02 Aug 2022 12:56:12: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 12:56:15: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12178885/SRX12178885.05_peaks.xls INFO @ Tue, 02 Aug 2022 12:56:15: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12178885/SRX12178885.05_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 12:56:15: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12178885/SRX12178885.05_summits.bed INFO @ Tue, 02 Aug 2022 12:56:15: Done! pass1 - making usageList (15 chroms): 2 millis pass2 - checking and writing primary data (11205 records, 4 fields): 33 millis CompletedMACS2peakCalling INFO @ Tue, 02 Aug 2022 12:56:17: 83000000 INFO @ Tue, 02 Aug 2022 12:56:17: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 12:56:17: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 12:56:17: #1 total tags in treatment: 29539584 INFO @ Tue, 02 Aug 2022 12:56:17: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 12:56:17: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 12:56:18: #1 tags after filtering in treatment: 20297248 INFO @ Tue, 02 Aug 2022 12:56:18: #1 Redundant rate of treatment: 0.31 INFO @ Tue, 02 Aug 2022 12:56:18: #1 finished! INFO @ Tue, 02 Aug 2022 12:56:18: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 12:56:18: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 12:56:19: #2 number of paired peaks: 110 WARNING @ Tue, 02 Aug 2022 12:56:19: Fewer paired peaks (110) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 110 pairs to build model! INFO @ Tue, 02 Aug 2022 12:56:19: start model_add_line... INFO @ Tue, 02 Aug 2022 12:56:19: start X-correlation... INFO @ Tue, 02 Aug 2022 12:56:19: end of X-cor INFO @ Tue, 02 Aug 2022 12:56:19: #2 finished! INFO @ Tue, 02 Aug 2022 12:56:19: #2 predicted fragment length is 92 bps INFO @ Tue, 02 Aug 2022 12:56:19: #2 alternative fragment length(s) may be 3,92,119,126,131,567,592 bps INFO @ Tue, 02 Aug 2022 12:56:19: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12178885/SRX12178885.20_model.r WARNING @ Tue, 02 Aug 2022 12:56:19: #2 Since the d (92) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 12:56:19: #2 You may need to consider one of the other alternative d(s): 3,92,119,126,131,567,592 WARNING @ Tue, 02 Aug 2022 12:56:19: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 12:56:19: #3 Call peaks... INFO @ Tue, 02 Aug 2022 12:56:19: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 12:56:31: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12178885/SRX12178885.10_peaks.xls INFO @ Tue, 02 Aug 2022 12:56:31: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12178885/SRX12178885.10_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 12:56:31: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12178885/SRX12178885.10_summits.bed INFO @ Tue, 02 Aug 2022 12:56:31: Done! pass1 - making usageList (14 chroms): 1 millis pass2 - checking and writing primary data (4835 records, 4 fields): 22 millis CompletedMACS2peakCalling INFO @ Tue, 02 Aug 2022 12:56:55: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 12:57:13: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12178885/SRX12178885.20_peaks.xls INFO @ Tue, 02 Aug 2022 12:57:13: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12178885/SRX12178885.20_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 12:57:13: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12178885/SRX12178885.20_summits.bed INFO @ Tue, 02 Aug 2022 12:57:13: Done! pass1 - making usageList (12 chroms): 1 millis pass2 - checking and writing primary data (669 records, 4 fields): 72 millis CompletedMACS2peakCalling