Job ID = 16436253 SRX = SRX12178884 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2022-08-02T02:11:52 prefetch.2.10.7: 1) Downloading 'SRR15888030'... 2022-08-02T02:11:52 prefetch.2.10.7: Downloading via HTTPS... 2022-08-02T02:13:57 prefetch.2.10.7: HTTPS download succeed 2022-08-02T02:13:57 prefetch.2.10.7: 1) 'SRR15888030' was downloaded successfully 2022-08-02T02:13:57 prefetch.2.10.7: 'SRR15888030' has 0 unresolved dependencies Read 35692253 spots for SRR15888030/SRR15888030.sra Written 35692253 spots for SRR15888030/SRR15888030.sra fastq に変換しました。 bowtie でマッピング中... Your job 16436967 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:01 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:46:34 35692253 reads; of these: 35692253 (100.00%) were paired; of these: 9903109 (27.75%) aligned concordantly 0 times 22854942 (64.03%) aligned concordantly exactly 1 time 2934202 (8.22%) aligned concordantly >1 times ---- 9903109 pairs aligned concordantly 0 times; of these: 3888670 (39.27%) aligned discordantly 1 time ---- 6014439 pairs aligned 0 times concordantly or discordantly; of these: 12028878 mates make up the pairs; of these: 7826144 (65.06%) aligned 0 times 3094332 (25.72%) aligned exactly 1 time 1108402 (9.21%) aligned >1 times 89.04% overall alignment rate Time searching: 00:46:35 Overall time: 00:46:35 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 28 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 8011213 / 29551499 = 0.2711 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 12:23:26: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12178884/SRX12178884.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12178884/SRX12178884.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12178884/SRX12178884.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12178884/SRX12178884.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 12:23:26: #1 read tag files... INFO @ Tue, 02 Aug 2022 12:23:26: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 12:23:31: 1000000 INFO @ Tue, 02 Aug 2022 12:23:37: 2000000 INFO @ Tue, 02 Aug 2022 12:23:43: 3000000 INFO @ Tue, 02 Aug 2022 12:23:48: 4000000 INFO @ Tue, 02 Aug 2022 12:23:53: 5000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 12:23:56: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12178884/SRX12178884.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12178884/SRX12178884.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12178884/SRX12178884.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12178884/SRX12178884.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 12:23:56: #1 read tag files... INFO @ Tue, 02 Aug 2022 12:23:56: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 12:23:59: 6000000 INFO @ Tue, 02 Aug 2022 12:24:03: 1000000 INFO @ Tue, 02 Aug 2022 12:24:05: 7000000 INFO @ Tue, 02 Aug 2022 12:24:09: 2000000 INFO @ Tue, 02 Aug 2022 12:24:11: 8000000 INFO @ Tue, 02 Aug 2022 12:24:16: 3000000 INFO @ Tue, 02 Aug 2022 12:24:16: 9000000 INFO @ Tue, 02 Aug 2022 12:24:22: 4000000 INFO @ Tue, 02 Aug 2022 12:24:22: 10000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 12:24:26: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12178884/SRX12178884.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12178884/SRX12178884.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12178884/SRX12178884.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12178884/SRX12178884.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 12:24:26: #1 read tag files... INFO @ Tue, 02 Aug 2022 12:24:26: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 12:24:28: 11000000 INFO @ Tue, 02 Aug 2022 12:24:29: 5000000 INFO @ Tue, 02 Aug 2022 12:24:32: 1000000 INFO @ Tue, 02 Aug 2022 12:24:34: 12000000 INFO @ Tue, 02 Aug 2022 12:24:36: 6000000 INFO @ Tue, 02 Aug 2022 12:24:38: 2000000 INFO @ Tue, 02 Aug 2022 12:24:40: 13000000 INFO @ Tue, 02 Aug 2022 12:24:43: 7000000 INFO @ Tue, 02 Aug 2022 12:24:45: 3000000 INFO @ Tue, 02 Aug 2022 12:24:46: 14000000 INFO @ Tue, 02 Aug 2022 12:24:50: 8000000 INFO @ Tue, 02 Aug 2022 12:24:51: 4000000 INFO @ Tue, 02 Aug 2022 12:24:51: 15000000 INFO @ Tue, 02 Aug 2022 12:24:57: 9000000 INFO @ Tue, 02 Aug 2022 12:24:57: 5000000 INFO @ Tue, 02 Aug 2022 12:24:57: 16000000 INFO @ Tue, 02 Aug 2022 12:25:03: 17000000 INFO @ Tue, 02 Aug 2022 12:25:04: 6000000 INFO @ Tue, 02 Aug 2022 12:25:04: 10000000 INFO @ Tue, 02 Aug 2022 12:25:09: 18000000 INFO @ Tue, 02 Aug 2022 12:25:10: 7000000 INFO @ Tue, 02 Aug 2022 12:25:11: 11000000 INFO @ Tue, 02 Aug 2022 12:25:15: 19000000 INFO @ Tue, 02 Aug 2022 12:25:17: 8000000 INFO @ Tue, 02 Aug 2022 12:25:18: 12000000 INFO @ Tue, 02 Aug 2022 12:25:21: 20000000 INFO @ Tue, 02 Aug 2022 12:25:23: 9000000 INFO @ Tue, 02 Aug 2022 12:25:25: 13000000 INFO @ Tue, 02 Aug 2022 12:25:27: 21000000 INFO @ Tue, 02 Aug 2022 12:25:30: 10000000 INFO @ Tue, 02 Aug 2022 12:25:32: 14000000 INFO @ Tue, 02 Aug 2022 12:25:33: 22000000 INFO @ Tue, 02 Aug 2022 12:25:37: 11000000 INFO @ Tue, 02 Aug 2022 12:25:38: 15000000 INFO @ Tue, 02 Aug 2022 12:25:39: 23000000 INFO @ Tue, 02 Aug 2022 12:25:44: 12000000 INFO @ Tue, 02 Aug 2022 12:25:44: 24000000 INFO @ Tue, 02 Aug 2022 12:25:45: 16000000 INFO @ Tue, 02 Aug 2022 12:25:50: 25000000 INFO @ Tue, 02 Aug 2022 12:25:51: 13000000 INFO @ Tue, 02 Aug 2022 12:25:52: 17000000 INFO @ Tue, 02 Aug 2022 12:25:56: 26000000 INFO @ Tue, 02 Aug 2022 12:25:58: 14000000 INFO @ Tue, 02 Aug 2022 12:25:59: 18000000 INFO @ Tue, 02 Aug 2022 12:26:02: 27000000 INFO @ Tue, 02 Aug 2022 12:26:05: 15000000 INFO @ Tue, 02 Aug 2022 12:26:06: 19000000 INFO @ Tue, 02 Aug 2022 12:26:08: 28000000 INFO @ Tue, 02 Aug 2022 12:26:11: 16000000 INFO @ Tue, 02 Aug 2022 12:26:13: 20000000 INFO @ Tue, 02 Aug 2022 12:26:14: 29000000 INFO @ Tue, 02 Aug 2022 12:26:18: 17000000 INFO @ Tue, 02 Aug 2022 12:26:20: 21000000 INFO @ Tue, 02 Aug 2022 12:26:20: 30000000 INFO @ Tue, 02 Aug 2022 12:26:25: 18000000 INFO @ Tue, 02 Aug 2022 12:26:27: 31000000 INFO @ Tue, 02 Aug 2022 12:26:27: 22000000 INFO @ Tue, 02 Aug 2022 12:26:32: 19000000 INFO @ Tue, 02 Aug 2022 12:26:33: 23000000 INFO @ Tue, 02 Aug 2022 12:26:34: 32000000 INFO @ Tue, 02 Aug 2022 12:26:39: 20000000 INFO @ Tue, 02 Aug 2022 12:26:40: 33000000 INFO @ Tue, 02 Aug 2022 12:26:40: 24000000 INFO @ Tue, 02 Aug 2022 12:26:45: 21000000 INFO @ Tue, 02 Aug 2022 12:26:46: 34000000 INFO @ Tue, 02 Aug 2022 12:26:46: 25000000 INFO @ Tue, 02 Aug 2022 12:26:52: 22000000 INFO @ Tue, 02 Aug 2022 12:26:52: 35000000 INFO @ Tue, 02 Aug 2022 12:26:53: 26000000 INFO @ Tue, 02 Aug 2022 12:26:59: 23000000 INFO @ Tue, 02 Aug 2022 12:26:59: 36000000 INFO @ Tue, 02 Aug 2022 12:27:00: 27000000 INFO @ Tue, 02 Aug 2022 12:27:05: 24000000 INFO @ Tue, 02 Aug 2022 12:27:06: 37000000 INFO @ Tue, 02 Aug 2022 12:27:06: 28000000 INFO @ Tue, 02 Aug 2022 12:27:12: 38000000 INFO @ Tue, 02 Aug 2022 12:27:12: 25000000 INFO @ Tue, 02 Aug 2022 12:27:13: 29000000 INFO @ Tue, 02 Aug 2022 12:27:18: 39000000 INFO @ Tue, 02 Aug 2022 12:27:19: 26000000 INFO @ Tue, 02 Aug 2022 12:27:19: 30000000 INFO @ Tue, 02 Aug 2022 12:27:25: 40000000 INFO @ Tue, 02 Aug 2022 12:27:25: 27000000 INFO @ Tue, 02 Aug 2022 12:27:26: 31000000 INFO @ Tue, 02 Aug 2022 12:27:31: 41000000 INFO @ Tue, 02 Aug 2022 12:27:32: 28000000 INFO @ Tue, 02 Aug 2022 12:27:33: 32000000 INFO @ Tue, 02 Aug 2022 12:27:38: 42000000 INFO @ Tue, 02 Aug 2022 12:27:39: 29000000 INFO @ Tue, 02 Aug 2022 12:27:39: 33000000 INFO @ Tue, 02 Aug 2022 12:27:45: 43000000 INFO @ Tue, 02 Aug 2022 12:27:45: 30000000 INFO @ Tue, 02 Aug 2022 12:27:46: 34000000 INFO @ Tue, 02 Aug 2022 12:27:51: 44000000 INFO @ Tue, 02 Aug 2022 12:27:52: 31000000 INFO @ Tue, 02 Aug 2022 12:27:53: 35000000 INFO @ Tue, 02 Aug 2022 12:27:57: 45000000 INFO @ Tue, 02 Aug 2022 12:27:59: 32000000 INFO @ Tue, 02 Aug 2022 12:28:00: 36000000 INFO @ Tue, 02 Aug 2022 12:28:04: 46000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 02 Aug 2022 12:28:05: 33000000 INFO @ Tue, 02 Aug 2022 12:28:06: 37000000 INFO @ Tue, 02 Aug 2022 12:28:09: 47000000 INFO @ Tue, 02 Aug 2022 12:28:12: 34000000 INFO @ Tue, 02 Aug 2022 12:28:12: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 12:28:12: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 12:28:12: #1 total tags in treatment: 18548637 INFO @ Tue, 02 Aug 2022 12:28:12: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 12:28:12: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 12:28:13: #1 tags after filtering in treatment: 12680005 INFO @ Tue, 02 Aug 2022 12:28:13: #1 Redundant rate of treatment: 0.32 INFO @ Tue, 02 Aug 2022 12:28:13: #1 finished! INFO @ Tue, 02 Aug 2022 12:28:13: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 12:28:13: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 12:28:13: 38000000 INFO @ Tue, 02 Aug 2022 12:28:14: #2 number of paired peaks: 1801 INFO @ Tue, 02 Aug 2022 12:28:14: start model_add_line... INFO @ Tue, 02 Aug 2022 12:28:14: start X-correlation... INFO @ Tue, 02 Aug 2022 12:28:14: end of X-cor INFO @ Tue, 02 Aug 2022 12:28:14: #2 finished! INFO @ Tue, 02 Aug 2022 12:28:14: #2 predicted fragment length is 63 bps INFO @ Tue, 02 Aug 2022 12:28:14: #2 alternative fragment length(s) may be 63 bps INFO @ Tue, 02 Aug 2022 12:28:14: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12178884/SRX12178884.05_model.r WARNING @ Tue, 02 Aug 2022 12:28:14: #2 Since the d (63) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 12:28:14: #2 You may need to consider one of the other alternative d(s): 63 WARNING @ Tue, 02 Aug 2022 12:28:14: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 12:28:14: #3 Call peaks... INFO @ Tue, 02 Aug 2022 12:28:14: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 12:28:18: 35000000 INFO @ Tue, 02 Aug 2022 12:28:19: 39000000 INFO @ Tue, 02 Aug 2022 12:28:25: 36000000 INFO @ Tue, 02 Aug 2022 12:28:26: 40000000 INFO @ Tue, 02 Aug 2022 12:28:31: 37000000 INFO @ Tue, 02 Aug 2022 12:28:33: 41000000 INFO @ Tue, 02 Aug 2022 12:28:38: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 12:28:38: 38000000 INFO @ Tue, 02 Aug 2022 12:28:40: 42000000 INFO @ Tue, 02 Aug 2022 12:28:44: 39000000 INFO @ Tue, 02 Aug 2022 12:28:47: 43000000 INFO @ Tue, 02 Aug 2022 12:28:51: 40000000 INFO @ Tue, 02 Aug 2022 12:28:51: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12178884/SRX12178884.05_peaks.xls INFO @ Tue, 02 Aug 2022 12:28:51: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12178884/SRX12178884.05_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 12:28:52: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12178884/SRX12178884.05_summits.bed INFO @ Tue, 02 Aug 2022 12:28:52: Done! pass1 - making usageList (15 chroms): 3 millis pass2 - checking and writing primary data (19375 records, 4 fields): 38 millis CompletedMACS2peakCalling INFO @ Tue, 02 Aug 2022 12:28:54: 44000000 INFO @ Tue, 02 Aug 2022 12:28:58: 41000000 INFO @ Tue, 02 Aug 2022 12:29:01: 45000000 INFO @ Tue, 02 Aug 2022 12:29:04: 42000000 INFO @ Tue, 02 Aug 2022 12:29:07: 46000000 INFO @ Tue, 02 Aug 2022 12:29:11: 43000000 INFO @ Tue, 02 Aug 2022 12:29:14: 47000000 INFO @ Tue, 02 Aug 2022 12:29:18: 44000000 INFO @ Tue, 02 Aug 2022 12:29:18: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 12:29:18: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 12:29:18: #1 total tags in treatment: 18548637 INFO @ Tue, 02 Aug 2022 12:29:18: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 12:29:18: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 12:29:19: #1 tags after filtering in treatment: 12680005 INFO @ Tue, 02 Aug 2022 12:29:19: #1 Redundant rate of treatment: 0.32 INFO @ Tue, 02 Aug 2022 12:29:19: #1 finished! INFO @ Tue, 02 Aug 2022 12:29:19: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 12:29:19: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 12:29:20: #2 number of paired peaks: 1801 INFO @ Tue, 02 Aug 2022 12:29:20: start model_add_line... INFO @ Tue, 02 Aug 2022 12:29:20: start X-correlation... INFO @ Tue, 02 Aug 2022 12:29:20: end of X-cor INFO @ Tue, 02 Aug 2022 12:29:20: #2 finished! INFO @ Tue, 02 Aug 2022 12:29:20: #2 predicted fragment length is 63 bps INFO @ Tue, 02 Aug 2022 12:29:20: #2 alternative fragment length(s) may be 63 bps INFO @ Tue, 02 Aug 2022 12:29:20: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12178884/SRX12178884.10_model.r WARNING @ Tue, 02 Aug 2022 12:29:20: #2 Since the d (63) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 12:29:20: #2 You may need to consider one of the other alternative d(s): 63 WARNING @ Tue, 02 Aug 2022 12:29:20: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 12:29:20: #3 Call peaks... INFO @ Tue, 02 Aug 2022 12:29:20: #3 Pre-compute pvalue-qvalue table... BigWig に変換しました。 INFO @ Tue, 02 Aug 2022 12:29:24: 45000000 INFO @ Tue, 02 Aug 2022 12:29:30: 46000000 INFO @ Tue, 02 Aug 2022 12:29:37: 47000000 INFO @ Tue, 02 Aug 2022 12:29:40: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 12:29:40: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 12:29:40: #1 total tags in treatment: 18548637 INFO @ Tue, 02 Aug 2022 12:29:40: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 12:29:40: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 12:29:41: #1 tags after filtering in treatment: 12680005 INFO @ Tue, 02 Aug 2022 12:29:41: #1 Redundant rate of treatment: 0.32 INFO @ Tue, 02 Aug 2022 12:29:41: #1 finished! INFO @ Tue, 02 Aug 2022 12:29:41: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 12:29:41: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 12:29:42: #2 number of paired peaks: 1801 INFO @ Tue, 02 Aug 2022 12:29:42: start model_add_line... INFO @ Tue, 02 Aug 2022 12:29:42: start X-correlation... INFO @ Tue, 02 Aug 2022 12:29:42: end of X-cor INFO @ Tue, 02 Aug 2022 12:29:42: #2 finished! INFO @ Tue, 02 Aug 2022 12:29:42: #2 predicted fragment length is 63 bps INFO @ Tue, 02 Aug 2022 12:29:42: #2 alternative fragment length(s) may be 63 bps INFO @ Tue, 02 Aug 2022 12:29:42: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12178884/SRX12178884.20_model.r WARNING @ Tue, 02 Aug 2022 12:29:42: #2 Since the d (63) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 12:29:42: #2 You may need to consider one of the other alternative d(s): 63 WARNING @ Tue, 02 Aug 2022 12:29:42: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 12:29:42: #3 Call peaks... INFO @ Tue, 02 Aug 2022 12:29:42: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 12:29:44: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 12:29:57: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12178884/SRX12178884.10_peaks.xls INFO @ Tue, 02 Aug 2022 12:29:57: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12178884/SRX12178884.10_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 12:29:57: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12178884/SRX12178884.10_summits.bed INFO @ Tue, 02 Aug 2022 12:29:57: Done! pass1 - making usageList (15 chroms): 2 millis pass2 - checking and writing primary data (9543 records, 4 fields): 113 millis CompletedMACS2peakCalling INFO @ Tue, 02 Aug 2022 12:30:05: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 12:30:17: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12178884/SRX12178884.20_peaks.xls INFO @ Tue, 02 Aug 2022 12:30:17: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12178884/SRX12178884.20_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 12:30:17: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12178884/SRX12178884.20_summits.bed INFO @ Tue, 02 Aug 2022 12:30:17: Done! pass1 - making usageList (13 chroms): 1 millis pass2 - checking and writing primary data (1406 records, 4 fields): 20 millis CompletedMACS2peakCalling