Job ID = 16436251 SRX = SRX12178882 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2022-08-02T02:11:37 prefetch.2.10.7: 1) Downloading 'SRR15888032'... 2022-08-02T02:11:37 prefetch.2.10.7: Downloading via HTTPS... 2022-08-02T02:13:34 prefetch.2.10.7: HTTPS download succeed 2022-08-02T02:13:34 prefetch.2.10.7: 1) 'SRR15888032' was downloaded successfully 2022-08-02T02:13:34 prefetch.2.10.7: 'SRR15888032' has 0 unresolved dependencies Read 36784080 spots for SRR15888032/SRR15888032.sra Written 36784080 spots for SRR15888032/SRR15888032.sra fastq に変換しました。 bowtie でマッピング中... Your job 16436975 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:01 Multiseed full-index search: 00:48:00 36784080 reads; of these: 36784080 (100.00%) were paired; of these: 10800912 (29.36%) aligned concordantly 0 times 22487534 (61.13%) aligned concordantly exactly 1 time 3495634 (9.50%) aligned concordantly >1 times ---- 10800912 pairs aligned concordantly 0 times; of these: 4185417 (38.75%) aligned discordantly 1 time ---- 6615495 pairs aligned 0 times concordantly or discordantly; of these: 13230990 mates make up the pairs; of these: 8125455 (61.41%) aligned 0 times 3772810 (28.51%) aligned exactly 1 time 1332725 (10.07%) aligned >1 times 88.96% overall alignment rate Time searching: 00:48:01 Overall time: 00:48:01 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 28 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 6335505 / 30069601 = 0.2107 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 12:24:46: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12178882/SRX12178882.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12178882/SRX12178882.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12178882/SRX12178882.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12178882/SRX12178882.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 12:24:46: #1 read tag files... INFO @ Tue, 02 Aug 2022 12:24:46: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 12:24:51: 1000000 INFO @ Tue, 02 Aug 2022 12:24:56: 2000000 INFO @ Tue, 02 Aug 2022 12:25:01: 3000000 INFO @ Tue, 02 Aug 2022 12:25:06: 4000000 INFO @ Tue, 02 Aug 2022 12:25:11: 5000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 12:25:14: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12178882/SRX12178882.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12178882/SRX12178882.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12178882/SRX12178882.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12178882/SRX12178882.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 12:25:14: #1 read tag files... INFO @ Tue, 02 Aug 2022 12:25:14: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 12:25:16: 6000000 INFO @ Tue, 02 Aug 2022 12:25:20: 1000000 INFO @ Tue, 02 Aug 2022 12:25:22: 7000000 INFO @ Tue, 02 Aug 2022 12:25:26: 2000000 INFO @ Tue, 02 Aug 2022 12:25:27: 8000000 INFO @ Tue, 02 Aug 2022 12:25:32: 3000000 INFO @ Tue, 02 Aug 2022 12:25:33: 9000000 INFO @ Tue, 02 Aug 2022 12:25:38: 4000000 INFO @ Tue, 02 Aug 2022 12:25:38: 10000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 12:25:43: 5000000 INFO @ Tue, 02 Aug 2022 12:25:44: 11000000 INFO @ Tue, 02 Aug 2022 12:25:45: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12178882/SRX12178882.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12178882/SRX12178882.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12178882/SRX12178882.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12178882/SRX12178882.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 12:25:45: #1 read tag files... INFO @ Tue, 02 Aug 2022 12:25:45: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 12:25:50: 6000000 INFO @ Tue, 02 Aug 2022 12:25:50: 12000000 INFO @ Tue, 02 Aug 2022 12:25:51: 1000000 INFO @ Tue, 02 Aug 2022 12:25:56: 7000000 INFO @ Tue, 02 Aug 2022 12:25:56: 13000000 INFO @ Tue, 02 Aug 2022 12:25:57: 2000000 INFO @ Tue, 02 Aug 2022 12:26:02: 8000000 INFO @ Tue, 02 Aug 2022 12:26:03: 14000000 INFO @ Tue, 02 Aug 2022 12:26:04: 3000000 INFO @ Tue, 02 Aug 2022 12:26:08: 9000000 INFO @ Tue, 02 Aug 2022 12:26:10: 15000000 INFO @ Tue, 02 Aug 2022 12:26:10: 4000000 INFO @ Tue, 02 Aug 2022 12:26:15: 10000000 INFO @ Tue, 02 Aug 2022 12:26:16: 16000000 INFO @ Tue, 02 Aug 2022 12:26:17: 5000000 INFO @ Tue, 02 Aug 2022 12:26:21: 11000000 INFO @ Tue, 02 Aug 2022 12:26:23: 6000000 INFO @ Tue, 02 Aug 2022 12:26:23: 17000000 INFO @ Tue, 02 Aug 2022 12:26:27: 12000000 INFO @ Tue, 02 Aug 2022 12:26:29: 7000000 INFO @ Tue, 02 Aug 2022 12:26:30: 18000000 INFO @ Tue, 02 Aug 2022 12:26:33: 13000000 INFO @ Tue, 02 Aug 2022 12:26:36: 8000000 INFO @ Tue, 02 Aug 2022 12:26:37: 19000000 INFO @ Tue, 02 Aug 2022 12:26:40: 14000000 INFO @ Tue, 02 Aug 2022 12:26:43: 9000000 INFO @ Tue, 02 Aug 2022 12:26:44: 20000000 INFO @ Tue, 02 Aug 2022 12:26:47: 15000000 INFO @ Tue, 02 Aug 2022 12:26:50: 10000000 INFO @ Tue, 02 Aug 2022 12:26:51: 21000000 INFO @ Tue, 02 Aug 2022 12:26:54: 16000000 INFO @ Tue, 02 Aug 2022 12:26:57: 11000000 INFO @ Tue, 02 Aug 2022 12:26:58: 22000000 INFO @ Tue, 02 Aug 2022 12:27:01: 17000000 INFO @ Tue, 02 Aug 2022 12:27:04: 12000000 INFO @ Tue, 02 Aug 2022 12:27:05: 23000000 INFO @ Tue, 02 Aug 2022 12:27:09: 18000000 INFO @ Tue, 02 Aug 2022 12:27:12: 13000000 INFO @ Tue, 02 Aug 2022 12:27:13: 24000000 INFO @ Tue, 02 Aug 2022 12:27:16: 19000000 INFO @ Tue, 02 Aug 2022 12:27:19: 14000000 INFO @ Tue, 02 Aug 2022 12:27:20: 25000000 INFO @ Tue, 02 Aug 2022 12:27:24: 20000000 INFO @ Tue, 02 Aug 2022 12:27:26: 15000000 INFO @ Tue, 02 Aug 2022 12:27:28: 26000000 INFO @ Tue, 02 Aug 2022 12:27:31: 21000000 INFO @ Tue, 02 Aug 2022 12:27:34: 16000000 INFO @ Tue, 02 Aug 2022 12:27:35: 27000000 INFO @ Tue, 02 Aug 2022 12:27:40: 22000000 INFO @ Tue, 02 Aug 2022 12:27:42: 17000000 INFO @ Tue, 02 Aug 2022 12:27:43: 28000000 INFO @ Tue, 02 Aug 2022 12:27:47: 23000000 INFO @ Tue, 02 Aug 2022 12:27:49: 18000000 INFO @ Tue, 02 Aug 2022 12:27:51: 29000000 INFO @ Tue, 02 Aug 2022 12:27:54: 24000000 INFO @ Tue, 02 Aug 2022 12:27:57: 19000000 INFO @ Tue, 02 Aug 2022 12:27:59: 30000000 INFO @ Tue, 02 Aug 2022 12:28:02: 25000000 INFO @ Tue, 02 Aug 2022 12:28:05: 20000000 INFO @ Tue, 02 Aug 2022 12:28:06: 31000000 INFO @ Tue, 02 Aug 2022 12:28:09: 26000000 INFO @ Tue, 02 Aug 2022 12:28:13: 21000000 INFO @ Tue, 02 Aug 2022 12:28:14: 32000000 INFO @ Tue, 02 Aug 2022 12:28:16: 27000000 INFO @ Tue, 02 Aug 2022 12:28:21: 22000000 INFO @ Tue, 02 Aug 2022 12:28:22: 33000000 INFO @ Tue, 02 Aug 2022 12:28:23: 28000000 INFO @ Tue, 02 Aug 2022 12:28:29: 23000000 INFO @ Tue, 02 Aug 2022 12:28:30: 34000000 INFO @ Tue, 02 Aug 2022 12:28:30: 29000000 INFO @ Tue, 02 Aug 2022 12:28:36: 24000000 INFO @ Tue, 02 Aug 2022 12:28:37: 30000000 INFO @ Tue, 02 Aug 2022 12:28:37: 35000000 INFO @ Tue, 02 Aug 2022 12:28:44: 31000000 INFO @ Tue, 02 Aug 2022 12:28:45: 25000000 INFO @ Tue, 02 Aug 2022 12:28:45: 36000000 INFO @ Tue, 02 Aug 2022 12:28:51: 32000000 INFO @ Tue, 02 Aug 2022 12:28:53: 26000000 INFO @ Tue, 02 Aug 2022 12:28:53: 37000000 INFO @ Tue, 02 Aug 2022 12:28:58: 33000000 INFO @ Tue, 02 Aug 2022 12:29:00: 27000000 INFO @ Tue, 02 Aug 2022 12:29:01: 38000000 INFO @ Tue, 02 Aug 2022 12:29:05: 34000000 INFO @ Tue, 02 Aug 2022 12:29:08: 39000000 INFO @ Tue, 02 Aug 2022 12:29:08: 28000000 INFO @ Tue, 02 Aug 2022 12:29:12: 35000000 INFO @ Tue, 02 Aug 2022 12:29:16: 40000000 INFO @ Tue, 02 Aug 2022 12:29:16: 29000000 INFO @ Tue, 02 Aug 2022 12:29:19: 36000000 INFO @ Tue, 02 Aug 2022 12:29:24: 41000000 INFO @ Tue, 02 Aug 2022 12:29:24: 30000000 INFO @ Tue, 02 Aug 2022 12:29:26: 37000000 INFO @ Tue, 02 Aug 2022 12:29:32: 42000000 INFO @ Tue, 02 Aug 2022 12:29:32: 31000000 INFO @ Tue, 02 Aug 2022 12:29:33: 38000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 02 Aug 2022 12:29:40: 43000000 INFO @ Tue, 02 Aug 2022 12:29:40: 39000000 INFO @ Tue, 02 Aug 2022 12:29:40: 32000000 INFO @ Tue, 02 Aug 2022 12:29:47: 40000000 INFO @ Tue, 02 Aug 2022 12:29:48: 33000000 INFO @ Tue, 02 Aug 2022 12:29:48: 44000000 INFO @ Tue, 02 Aug 2022 12:29:54: 41000000 INFO @ Tue, 02 Aug 2022 12:29:56: 34000000 INFO @ Tue, 02 Aug 2022 12:29:56: 45000000 INFO @ Tue, 02 Aug 2022 12:30:01: 42000000 INFO @ Tue, 02 Aug 2022 12:30:04: 35000000 INFO @ Tue, 02 Aug 2022 12:30:04: 46000000 INFO @ Tue, 02 Aug 2022 12:30:08: 43000000 INFO @ Tue, 02 Aug 2022 12:30:11: 36000000 INFO @ Tue, 02 Aug 2022 12:30:12: 47000000 INFO @ Tue, 02 Aug 2022 12:30:15: 44000000 INFO @ Tue, 02 Aug 2022 12:30:19: 37000000 INFO @ Tue, 02 Aug 2022 12:30:20: 48000000 INFO @ Tue, 02 Aug 2022 12:30:22: 45000000 INFO @ Tue, 02 Aug 2022 12:30:27: 38000000 INFO @ Tue, 02 Aug 2022 12:30:27: 49000000 INFO @ Tue, 02 Aug 2022 12:30:30: 46000000 INFO @ Tue, 02 Aug 2022 12:30:34: 39000000 INFO @ Tue, 02 Aug 2022 12:30:35: 50000000 INFO @ Tue, 02 Aug 2022 12:30:37: 47000000 INFO @ Tue, 02 Aug 2022 12:30:42: 40000000 INFO @ Tue, 02 Aug 2022 12:30:43: 51000000 INFO @ Tue, 02 Aug 2022 12:30:44: 48000000 INFO @ Tue, 02 Aug 2022 12:30:50: 41000000 INFO @ Tue, 02 Aug 2022 12:30:50: 52000000 INFO @ Tue, 02 Aug 2022 12:30:51: 49000000 BigWig に変換しました。 INFO @ Tue, 02 Aug 2022 12:30:57: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 12:30:57: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 12:30:57: #1 total tags in treatment: 20240178 INFO @ Tue, 02 Aug 2022 12:30:57: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 12:30:57: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 12:30:57: #1 tags after filtering in treatment: 13246396 INFO @ Tue, 02 Aug 2022 12:30:57: #1 Redundant rate of treatment: 0.35 INFO @ Tue, 02 Aug 2022 12:30:57: #1 finished! INFO @ Tue, 02 Aug 2022 12:30:57: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 12:30:57: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 12:30:58: 42000000 INFO @ Tue, 02 Aug 2022 12:30:58: 50000000 INFO @ Tue, 02 Aug 2022 12:30:58: #2 number of paired peaks: 1746 INFO @ Tue, 02 Aug 2022 12:30:58: start model_add_line... INFO @ Tue, 02 Aug 2022 12:30:58: start X-correlation... INFO @ Tue, 02 Aug 2022 12:30:59: end of X-cor INFO @ Tue, 02 Aug 2022 12:30:59: #2 finished! INFO @ Tue, 02 Aug 2022 12:30:59: #2 predicted fragment length is 65 bps INFO @ Tue, 02 Aug 2022 12:30:59: #2 alternative fragment length(s) may be 4,65 bps INFO @ Tue, 02 Aug 2022 12:30:59: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12178882/SRX12178882.05_model.r WARNING @ Tue, 02 Aug 2022 12:30:59: #2 Since the d (65) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 12:30:59: #2 You may need to consider one of the other alternative d(s): 4,65 WARNING @ Tue, 02 Aug 2022 12:30:59: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 12:30:59: #3 Call peaks... INFO @ Tue, 02 Aug 2022 12:30:59: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 12:31:05: 43000000 INFO @ Tue, 02 Aug 2022 12:31:05: 51000000 INFO @ Tue, 02 Aug 2022 12:31:12: 52000000 INFO @ Tue, 02 Aug 2022 12:31:12: 44000000 INFO @ Tue, 02 Aug 2022 12:31:18: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 12:31:18: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 12:31:18: #1 total tags in treatment: 20240178 INFO @ Tue, 02 Aug 2022 12:31:18: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 12:31:18: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 12:31:18: #1 tags after filtering in treatment: 13246396 INFO @ Tue, 02 Aug 2022 12:31:18: #1 Redundant rate of treatment: 0.35 INFO @ Tue, 02 Aug 2022 12:31:18: #1 finished! INFO @ Tue, 02 Aug 2022 12:31:18: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 12:31:18: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 12:31:19: #2 number of paired peaks: 1746 INFO @ Tue, 02 Aug 2022 12:31:19: start model_add_line... INFO @ Tue, 02 Aug 2022 12:31:19: start X-correlation... INFO @ Tue, 02 Aug 2022 12:31:19: end of X-cor INFO @ Tue, 02 Aug 2022 12:31:19: #2 finished! INFO @ Tue, 02 Aug 2022 12:31:19: #2 predicted fragment length is 65 bps INFO @ Tue, 02 Aug 2022 12:31:19: #2 alternative fragment length(s) may be 4,65 bps INFO @ Tue, 02 Aug 2022 12:31:19: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12178882/SRX12178882.10_model.r WARNING @ Tue, 02 Aug 2022 12:31:19: #2 Since the d (65) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 12:31:19: #2 You may need to consider one of the other alternative d(s): 4,65 WARNING @ Tue, 02 Aug 2022 12:31:19: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 12:31:19: #3 Call peaks... INFO @ Tue, 02 Aug 2022 12:31:19: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 12:31:20: 45000000 INFO @ Tue, 02 Aug 2022 12:31:25: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 12:31:27: 46000000 INFO @ Tue, 02 Aug 2022 12:31:34: 47000000 INFO @ Tue, 02 Aug 2022 12:31:40: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12178882/SRX12178882.05_peaks.xls INFO @ Tue, 02 Aug 2022 12:31:40: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12178882/SRX12178882.05_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 12:31:40: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12178882/SRX12178882.05_summits.bed INFO @ Tue, 02 Aug 2022 12:31:40: Done! pass1 - making usageList (15 chroms): 3 millis INFO @ Tue, 02 Aug 2022 12:31:41: 48000000 pass2 - checking and writing primary data (20066 records, 4 fields): 58 millis CompletedMACS2peakCalling INFO @ Tue, 02 Aug 2022 12:31:44: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 12:31:48: 49000000 INFO @ Tue, 02 Aug 2022 12:31:55: 50000000 INFO @ Tue, 02 Aug 2022 12:31:58: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12178882/SRX12178882.10_peaks.xls INFO @ Tue, 02 Aug 2022 12:31:58: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12178882/SRX12178882.10_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 12:31:58: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12178882/SRX12178882.10_summits.bed INFO @ Tue, 02 Aug 2022 12:31:59: Done! pass1 - making usageList (14 chroms): 2 millis pass2 - checking and writing primary data (9586 records, 4 fields): 51 millis CompletedMACS2peakCalling INFO @ Tue, 02 Aug 2022 12:32:02: 51000000 INFO @ Tue, 02 Aug 2022 12:32:09: 52000000 INFO @ Tue, 02 Aug 2022 12:32:15: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 12:32:15: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 12:32:15: #1 total tags in treatment: 20240178 INFO @ Tue, 02 Aug 2022 12:32:15: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 12:32:15: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 12:32:15: #1 tags after filtering in treatment: 13246396 INFO @ Tue, 02 Aug 2022 12:32:15: #1 Redundant rate of treatment: 0.35 INFO @ Tue, 02 Aug 2022 12:32:15: #1 finished! INFO @ Tue, 02 Aug 2022 12:32:15: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 12:32:15: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 12:32:16: #2 number of paired peaks: 1746 INFO @ Tue, 02 Aug 2022 12:32:16: start model_add_line... INFO @ Tue, 02 Aug 2022 12:32:16: start X-correlation... INFO @ Tue, 02 Aug 2022 12:32:16: end of X-cor INFO @ Tue, 02 Aug 2022 12:32:16: #2 finished! INFO @ Tue, 02 Aug 2022 12:32:16: #2 predicted fragment length is 65 bps INFO @ Tue, 02 Aug 2022 12:32:16: #2 alternative fragment length(s) may be 4,65 bps INFO @ Tue, 02 Aug 2022 12:32:16: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12178882/SRX12178882.20_model.r WARNING @ Tue, 02 Aug 2022 12:32:16: #2 Since the d (65) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 12:32:16: #2 You may need to consider one of the other alternative d(s): 4,65 WARNING @ Tue, 02 Aug 2022 12:32:16: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 12:32:16: #3 Call peaks... INFO @ Tue, 02 Aug 2022 12:32:16: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 12:32:41: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 12:32:56: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12178882/SRX12178882.20_peaks.xls INFO @ Tue, 02 Aug 2022 12:32:56: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12178882/SRX12178882.20_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 12:32:56: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12178882/SRX12178882.20_summits.bed INFO @ Tue, 02 Aug 2022 12:32:57: Done! pass1 - making usageList (11 chroms): 1 millis pass2 - checking and writing primary data (1254 records, 4 fields): 28 millis CompletedMACS2peakCalling