Job ID = 16436230 SRX = SRX12178875 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2022-08-02T02:10:07 prefetch.2.10.7: 1) Downloading 'SRR15888039'... 2022-08-02T02:10:07 prefetch.2.10.7: Downloading via HTTPS... 2022-08-02T02:11:59 prefetch.2.10.7: HTTPS download succeed 2022-08-02T02:11:59 prefetch.2.10.7: 1) 'SRR15888039' was downloaded successfully 2022-08-02T02:11:59 prefetch.2.10.7: 'SRR15888039' has 0 unresolved dependencies Read 39661335 spots for SRR15888039/SRR15888039.sra Written 39661335 spots for SRR15888039/SRR15888039.sra fastq に変換しました。 bowtie でマッピング中... Your job 16436852 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:39:15 39661335 reads; of these: 39661335 (100.00%) were paired; of these: 13109120 (33.05%) aligned concordantly 0 times 23073177 (58.18%) aligned concordantly exactly 1 time 3479038 (8.77%) aligned concordantly >1 times ---- 13109120 pairs aligned concordantly 0 times; of these: 5247654 (40.03%) aligned discordantly 1 time ---- 7861466 pairs aligned 0 times concordantly or discordantly; of these: 15722932 mates make up the pairs; of these: 9020583 (57.37%) aligned 0 times 4985562 (31.71%) aligned exactly 1 time 1716787 (10.92%) aligned >1 times 88.63% overall alignment rate Time searching: 00:39:15 Overall time: 00:39:15 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 32 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 4276297 / 31710647 = 0.1349 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 12:11:57: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12178875/SRX12178875.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12178875/SRX12178875.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12178875/SRX12178875.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12178875/SRX12178875.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 12:11:57: #1 read tag files... INFO @ Tue, 02 Aug 2022 12:11:57: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 12:12:02: 1000000 INFO @ Tue, 02 Aug 2022 12:12:06: 2000000 INFO @ Tue, 02 Aug 2022 12:12:10: 3000000 INFO @ Tue, 02 Aug 2022 12:12:15: 4000000 INFO @ Tue, 02 Aug 2022 12:12:19: 5000000 INFO @ Tue, 02 Aug 2022 12:12:23: 6000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 12:12:26: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12178875/SRX12178875.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12178875/SRX12178875.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12178875/SRX12178875.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12178875/SRX12178875.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 12:12:26: #1 read tag files... INFO @ Tue, 02 Aug 2022 12:12:26: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 12:12:28: 7000000 INFO @ Tue, 02 Aug 2022 12:12:31: 1000000 INFO @ Tue, 02 Aug 2022 12:12:32: 8000000 INFO @ Tue, 02 Aug 2022 12:12:36: 2000000 INFO @ Tue, 02 Aug 2022 12:12:37: 9000000 INFO @ Tue, 02 Aug 2022 12:12:40: 3000000 INFO @ Tue, 02 Aug 2022 12:12:42: 10000000 INFO @ Tue, 02 Aug 2022 12:12:45: 4000000 INFO @ Tue, 02 Aug 2022 12:12:47: 11000000 INFO @ Tue, 02 Aug 2022 12:12:50: 5000000 INFO @ Tue, 02 Aug 2022 12:12:52: 12000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 12:12:56: 6000000 INFO @ Tue, 02 Aug 2022 12:12:56: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12178875/SRX12178875.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12178875/SRX12178875.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12178875/SRX12178875.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12178875/SRX12178875.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 12:12:56: #1 read tag files... INFO @ Tue, 02 Aug 2022 12:12:56: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 12:12:57: 13000000 INFO @ Tue, 02 Aug 2022 12:13:00: 7000000 INFO @ Tue, 02 Aug 2022 12:13:01: 1000000 INFO @ Tue, 02 Aug 2022 12:13:02: 14000000 INFO @ Tue, 02 Aug 2022 12:13:05: 8000000 INFO @ Tue, 02 Aug 2022 12:13:06: 2000000 INFO @ Tue, 02 Aug 2022 12:13:07: 15000000 INFO @ Tue, 02 Aug 2022 12:13:10: 9000000 INFO @ Tue, 02 Aug 2022 12:13:11: 3000000 INFO @ Tue, 02 Aug 2022 12:13:12: 16000000 INFO @ Tue, 02 Aug 2022 12:13:15: 10000000 INFO @ Tue, 02 Aug 2022 12:13:16: 4000000 INFO @ Tue, 02 Aug 2022 12:13:18: 17000000 INFO @ Tue, 02 Aug 2022 12:13:20: 11000000 INFO @ Tue, 02 Aug 2022 12:13:21: 5000000 INFO @ Tue, 02 Aug 2022 12:13:23: 18000000 INFO @ Tue, 02 Aug 2022 12:13:24: 12000000 INFO @ Tue, 02 Aug 2022 12:13:26: 6000000 INFO @ Tue, 02 Aug 2022 12:13:28: 19000000 INFO @ Tue, 02 Aug 2022 12:13:29: 13000000 INFO @ Tue, 02 Aug 2022 12:13:31: 7000000 INFO @ Tue, 02 Aug 2022 12:13:33: 20000000 INFO @ Tue, 02 Aug 2022 12:13:34: 14000000 INFO @ Tue, 02 Aug 2022 12:13:36: 8000000 INFO @ Tue, 02 Aug 2022 12:13:38: 21000000 INFO @ Tue, 02 Aug 2022 12:13:38: 15000000 INFO @ Tue, 02 Aug 2022 12:13:40: 9000000 INFO @ Tue, 02 Aug 2022 12:13:43: 16000000 INFO @ Tue, 02 Aug 2022 12:13:43: 22000000 INFO @ Tue, 02 Aug 2022 12:13:45: 10000000 INFO @ Tue, 02 Aug 2022 12:13:48: 17000000 INFO @ Tue, 02 Aug 2022 12:13:49: 23000000 INFO @ Tue, 02 Aug 2022 12:13:50: 11000000 INFO @ Tue, 02 Aug 2022 12:13:53: 18000000 INFO @ Tue, 02 Aug 2022 12:13:54: 24000000 INFO @ Tue, 02 Aug 2022 12:13:55: 12000000 INFO @ Tue, 02 Aug 2022 12:13:58: 19000000 INFO @ Tue, 02 Aug 2022 12:13:59: 25000000 INFO @ Tue, 02 Aug 2022 12:14:00: 13000000 INFO @ Tue, 02 Aug 2022 12:14:02: 20000000 INFO @ Tue, 02 Aug 2022 12:14:04: 26000000 INFO @ Tue, 02 Aug 2022 12:14:04: 14000000 INFO @ Tue, 02 Aug 2022 12:14:07: 21000000 INFO @ Tue, 02 Aug 2022 12:14:09: 15000000 INFO @ Tue, 02 Aug 2022 12:14:09: 27000000 INFO @ Tue, 02 Aug 2022 12:14:12: 22000000 INFO @ Tue, 02 Aug 2022 12:14:14: 16000000 INFO @ Tue, 02 Aug 2022 12:14:15: 28000000 INFO @ Tue, 02 Aug 2022 12:14:16: 23000000 INFO @ Tue, 02 Aug 2022 12:14:19: 17000000 INFO @ Tue, 02 Aug 2022 12:14:20: 29000000 INFO @ Tue, 02 Aug 2022 12:14:21: 24000000 INFO @ Tue, 02 Aug 2022 12:14:23: 18000000 INFO @ Tue, 02 Aug 2022 12:14:25: 30000000 INFO @ Tue, 02 Aug 2022 12:14:26: 25000000 INFO @ Tue, 02 Aug 2022 12:14:28: 19000000 INFO @ Tue, 02 Aug 2022 12:14:30: 31000000 INFO @ Tue, 02 Aug 2022 12:14:31: 26000000 INFO @ Tue, 02 Aug 2022 12:14:34: 20000000 INFO @ Tue, 02 Aug 2022 12:14:35: 32000000 INFO @ Tue, 02 Aug 2022 12:14:36: 27000000 INFO @ Tue, 02 Aug 2022 12:14:38: 21000000 INFO @ Tue, 02 Aug 2022 12:14:40: 33000000 INFO @ Tue, 02 Aug 2022 12:14:41: 28000000 INFO @ Tue, 02 Aug 2022 12:14:43: 22000000 INFO @ Tue, 02 Aug 2022 12:14:45: 34000000 INFO @ Tue, 02 Aug 2022 12:14:45: 29000000 INFO @ Tue, 02 Aug 2022 12:14:48: 23000000 INFO @ Tue, 02 Aug 2022 12:14:50: 35000000 INFO @ Tue, 02 Aug 2022 12:14:50: 30000000 INFO @ Tue, 02 Aug 2022 12:14:53: 24000000 INFO @ Tue, 02 Aug 2022 12:14:54: 36000000 INFO @ Tue, 02 Aug 2022 12:14:55: 31000000 INFO @ Tue, 02 Aug 2022 12:14:58: 25000000 INFO @ Tue, 02 Aug 2022 12:14:59: 37000000 INFO @ Tue, 02 Aug 2022 12:15:00: 32000000 INFO @ Tue, 02 Aug 2022 12:15:03: 26000000 INFO @ Tue, 02 Aug 2022 12:15:04: 38000000 INFO @ Tue, 02 Aug 2022 12:15:04: 33000000 INFO @ Tue, 02 Aug 2022 12:15:07: 27000000 INFO @ Tue, 02 Aug 2022 12:15:09: 39000000 INFO @ Tue, 02 Aug 2022 12:15:09: 34000000 INFO @ Tue, 02 Aug 2022 12:15:12: 28000000 INFO @ Tue, 02 Aug 2022 12:15:14: 40000000 INFO @ Tue, 02 Aug 2022 12:15:14: 35000000 INFO @ Tue, 02 Aug 2022 12:15:17: 29000000 INFO @ Tue, 02 Aug 2022 12:15:18: 36000000 INFO @ Tue, 02 Aug 2022 12:15:18: 41000000 INFO @ Tue, 02 Aug 2022 12:15:22: 30000000 INFO @ Tue, 02 Aug 2022 12:15:23: 37000000 INFO @ Tue, 02 Aug 2022 12:15:23: 42000000 INFO @ Tue, 02 Aug 2022 12:15:27: 31000000 INFO @ Tue, 02 Aug 2022 12:15:28: 38000000 INFO @ Tue, 02 Aug 2022 12:15:28: 43000000 INFO @ Tue, 02 Aug 2022 12:15:31: 32000000 INFO @ Tue, 02 Aug 2022 12:15:32: 39000000 INFO @ Tue, 02 Aug 2022 12:15:33: 44000000 INFO @ Tue, 02 Aug 2022 12:15:36: 33000000 INFO @ Tue, 02 Aug 2022 12:15:37: 40000000 INFO @ Tue, 02 Aug 2022 12:15:37: 45000000 INFO @ Tue, 02 Aug 2022 12:15:41: 34000000 INFO @ Tue, 02 Aug 2022 12:15:42: 41000000 INFO @ Tue, 02 Aug 2022 12:15:42: 46000000 INFO @ Tue, 02 Aug 2022 12:15:46: 35000000 INFO @ Tue, 02 Aug 2022 12:15:46: 42000000 INFO @ Tue, 02 Aug 2022 12:15:47: 47000000 INFO @ Tue, 02 Aug 2022 12:15:50: 36000000 INFO @ Tue, 02 Aug 2022 12:15:51: 43000000 INFO @ Tue, 02 Aug 2022 12:15:51: 48000000 INFO @ Tue, 02 Aug 2022 12:15:55: 37000000 INFO @ Tue, 02 Aug 2022 12:15:56: 44000000 INFO @ Tue, 02 Aug 2022 12:15:56: 49000000 INFO @ Tue, 02 Aug 2022 12:16:00: 38000000 INFO @ Tue, 02 Aug 2022 12:16:01: 45000000 INFO @ Tue, 02 Aug 2022 12:16:01: 50000000 INFO @ Tue, 02 Aug 2022 12:16:04: 39000000 INFO @ Tue, 02 Aug 2022 12:16:05: 46000000 INFO @ Tue, 02 Aug 2022 12:16:06: 51000000 INFO @ Tue, 02 Aug 2022 12:16:09: 40000000 INFO @ Tue, 02 Aug 2022 12:16:10: 47000000 INFO @ Tue, 02 Aug 2022 12:16:10: 52000000 INFO @ Tue, 02 Aug 2022 12:16:14: 41000000 INFO @ Tue, 02 Aug 2022 12:16:15: 48000000 INFO @ Tue, 02 Aug 2022 12:16:15: 53000000 INFO @ Tue, 02 Aug 2022 12:16:19: 42000000 INFO @ Tue, 02 Aug 2022 12:16:20: 49000000 INFO @ Tue, 02 Aug 2022 12:16:20: 54000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 02 Aug 2022 12:16:24: 43000000 INFO @ Tue, 02 Aug 2022 12:16:25: 50000000 INFO @ Tue, 02 Aug 2022 12:16:25: 55000000 INFO @ Tue, 02 Aug 2022 12:16:29: 44000000 INFO @ Tue, 02 Aug 2022 12:16:30: 56000000 INFO @ Tue, 02 Aug 2022 12:16:30: 51000000 INFO @ Tue, 02 Aug 2022 12:16:34: 45000000 INFO @ Tue, 02 Aug 2022 12:16:35: 57000000 INFO @ Tue, 02 Aug 2022 12:16:35: 52000000 INFO @ Tue, 02 Aug 2022 12:16:39: 46000000 INFO @ Tue, 02 Aug 2022 12:16:40: 58000000 INFO @ Tue, 02 Aug 2022 12:16:40: 53000000 INFO @ Tue, 02 Aug 2022 12:16:44: 47000000 INFO @ Tue, 02 Aug 2022 12:16:45: 59000000 INFO @ Tue, 02 Aug 2022 12:16:45: 54000000 INFO @ Tue, 02 Aug 2022 12:16:48: 48000000 INFO @ Tue, 02 Aug 2022 12:16:49: 60000000 INFO @ Tue, 02 Aug 2022 12:16:50: 55000000 INFO @ Tue, 02 Aug 2022 12:16:53: 49000000 INFO @ Tue, 02 Aug 2022 12:16:54: 61000000 INFO @ Tue, 02 Aug 2022 12:16:55: 56000000 INFO @ Tue, 02 Aug 2022 12:16:58: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 12:16:58: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 12:16:58: #1 total tags in treatment: 22710678 INFO @ Tue, 02 Aug 2022 12:16:58: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 12:16:58: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 12:16:58: 50000000 INFO @ Tue, 02 Aug 2022 12:16:58: #1 tags after filtering in treatment: 14680898 INFO @ Tue, 02 Aug 2022 12:16:58: #1 Redundant rate of treatment: 0.35 INFO @ Tue, 02 Aug 2022 12:16:58: #1 finished! INFO @ Tue, 02 Aug 2022 12:16:58: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 12:16:58: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 12:16:59: #2 number of paired peaks: 1243 INFO @ Tue, 02 Aug 2022 12:16:59: start model_add_line... INFO @ Tue, 02 Aug 2022 12:17:00: start X-correlation... INFO @ Tue, 02 Aug 2022 12:17:00: end of X-cor INFO @ Tue, 02 Aug 2022 12:17:00: #2 finished! INFO @ Tue, 02 Aug 2022 12:17:00: #2 predicted fragment length is 73 bps INFO @ Tue, 02 Aug 2022 12:17:00: #2 alternative fragment length(s) may be 4,73 bps INFO @ Tue, 02 Aug 2022 12:17:00: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12178875/SRX12178875.05_model.r INFO @ Tue, 02 Aug 2022 12:17:00: 57000000 WARNING @ Tue, 02 Aug 2022 12:17:00: #2 Since the d (73) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 12:17:00: #2 You may need to consider one of the other alternative d(s): 4,73 WARNING @ Tue, 02 Aug 2022 12:17:00: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 12:17:00: #3 Call peaks... INFO @ Tue, 02 Aug 2022 12:17:00: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 12:17:03: 51000000 INFO @ Tue, 02 Aug 2022 12:17:04: 58000000 INFO @ Tue, 02 Aug 2022 12:17:08: 52000000 INFO @ Tue, 02 Aug 2022 12:17:09: 59000000 INFO @ Tue, 02 Aug 2022 12:17:13: 53000000 INFO @ Tue, 02 Aug 2022 12:17:14: 60000000 INFO @ Tue, 02 Aug 2022 12:17:17: 54000000 INFO @ Tue, 02 Aug 2022 12:17:19: 61000000 INFO @ Tue, 02 Aug 2022 12:17:22: 55000000 INFO @ Tue, 02 Aug 2022 12:17:23: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 12:17:23: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 12:17:23: #1 total tags in treatment: 22710678 INFO @ Tue, 02 Aug 2022 12:17:23: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 12:17:23: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 12:17:23: #1 tags after filtering in treatment: 14680898 INFO @ Tue, 02 Aug 2022 12:17:23: #1 Redundant rate of treatment: 0.35 INFO @ Tue, 02 Aug 2022 12:17:23: #1 finished! INFO @ Tue, 02 Aug 2022 12:17:23: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 12:17:23: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 12:17:24: #2 number of paired peaks: 1243 INFO @ Tue, 02 Aug 2022 12:17:24: start model_add_line... INFO @ Tue, 02 Aug 2022 12:17:24: start X-correlation... INFO @ Tue, 02 Aug 2022 12:17:24: end of X-cor INFO @ Tue, 02 Aug 2022 12:17:24: #2 finished! INFO @ Tue, 02 Aug 2022 12:17:24: #2 predicted fragment length is 73 bps INFO @ Tue, 02 Aug 2022 12:17:24: #2 alternative fragment length(s) may be 4,73 bps INFO @ Tue, 02 Aug 2022 12:17:24: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12178875/SRX12178875.10_model.r WARNING @ Tue, 02 Aug 2022 12:17:24: #2 Since the d (73) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 12:17:24: #2 You may need to consider one of the other alternative d(s): 4,73 WARNING @ Tue, 02 Aug 2022 12:17:24: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 12:17:24: #3 Call peaks... INFO @ Tue, 02 Aug 2022 12:17:24: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 12:17:27: 56000000 INFO @ Tue, 02 Aug 2022 12:17:27: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 12:17:31: 57000000 BigWig に変換しました。 INFO @ Tue, 02 Aug 2022 12:17:36: 58000000 INFO @ Tue, 02 Aug 2022 12:17:40: 59000000 INFO @ Tue, 02 Aug 2022 12:17:41: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12178875/SRX12178875.05_peaks.xls INFO @ Tue, 02 Aug 2022 12:17:42: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12178875/SRX12178875.05_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 12:17:42: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12178875/SRX12178875.05_summits.bed INFO @ Tue, 02 Aug 2022 12:17:42: Done! pass1 - making usageList (15 chroms): 3 millis pass2 - checking and writing primary data (19562 records, 4 fields): 158 millis CompletedMACS2peakCalling INFO @ Tue, 02 Aug 2022 12:17:44: 60000000 INFO @ Tue, 02 Aug 2022 12:17:49: 61000000 INFO @ Tue, 02 Aug 2022 12:17:52: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 12:17:52: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 12:17:52: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 12:17:52: #1 total tags in treatment: 22710678 INFO @ Tue, 02 Aug 2022 12:17:52: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 12:17:52: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 12:17:53: #1 tags after filtering in treatment: 14680898 INFO @ Tue, 02 Aug 2022 12:17:53: #1 Redundant rate of treatment: 0.35 INFO @ Tue, 02 Aug 2022 12:17:53: #1 finished! INFO @ Tue, 02 Aug 2022 12:17:53: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 12:17:53: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 12:17:54: #2 number of paired peaks: 1243 INFO @ Tue, 02 Aug 2022 12:17:54: start model_add_line... INFO @ Tue, 02 Aug 2022 12:17:54: start X-correlation... INFO @ Tue, 02 Aug 2022 12:17:54: end of X-cor INFO @ Tue, 02 Aug 2022 12:17:54: #2 finished! INFO @ Tue, 02 Aug 2022 12:17:54: #2 predicted fragment length is 73 bps INFO @ Tue, 02 Aug 2022 12:17:54: #2 alternative fragment length(s) may be 4,73 bps INFO @ Tue, 02 Aug 2022 12:17:54: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12178875/SRX12178875.20_model.r WARNING @ Tue, 02 Aug 2022 12:17:54: #2 Since the d (73) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 12:17:54: #2 You may need to consider one of the other alternative d(s): 4,73 WARNING @ Tue, 02 Aug 2022 12:17:54: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 12:17:54: #3 Call peaks... INFO @ Tue, 02 Aug 2022 12:17:54: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 12:18:05: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12178875/SRX12178875.10_peaks.xls INFO @ Tue, 02 Aug 2022 12:18:05: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12178875/SRX12178875.10_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 12:18:06: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12178875/SRX12178875.10_summits.bed INFO @ Tue, 02 Aug 2022 12:18:06: Done! pass1 - making usageList (14 chroms): 1 millis pass2 - checking and writing primary data (9949 records, 4 fields): 30 millis CompletedMACS2peakCalling INFO @ Tue, 02 Aug 2022 12:18:21: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 12:18:35: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12178875/SRX12178875.20_peaks.xls INFO @ Tue, 02 Aug 2022 12:18:35: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12178875/SRX12178875.20_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 12:18:35: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12178875/SRX12178875.20_summits.bed INFO @ Tue, 02 Aug 2022 12:18:35: Done! pass1 - making usageList (13 chroms): 1 millis pass2 - checking and writing primary data (1731 records, 4 fields): 39 millis CompletedMACS2peakCalling