Job ID = 16436220 SRX = SRX12178866 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2022-08-02T02:07:52 prefetch.2.10.7: 1) Downloading 'SRR15888048'... 2022-08-02T02:07:52 prefetch.2.10.7: Downloading via HTTPS... 2022-08-02T02:09:49 prefetch.2.10.7: HTTPS download succeed 2022-08-02T02:09:49 prefetch.2.10.7: 1) 'SRR15888048' was downloaded successfully 2022-08-02T02:09:49 prefetch.2.10.7: 'SRR15888048' has 0 unresolved dependencies Read 38558833 spots for SRR15888048/SRR15888048.sra Written 38558833 spots for SRR15888048/SRR15888048.sra fastq に変換しました。 bowtie でマッピング中... Your job 16436969 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:01 Multiseed full-index search: 00:48:56 38558833 reads; of these: 38558833 (100.00%) were paired; of these: 12496941 (32.41%) aligned concordantly 0 times 22828221 (59.20%) aligned concordantly exactly 1 time 3233671 (8.39%) aligned concordantly >1 times ---- 12496941 pairs aligned concordantly 0 times; of these: 5307029 (42.47%) aligned discordantly 1 time ---- 7189912 pairs aligned 0 times concordantly or discordantly; of these: 14379824 mates make up the pairs; of these: 8562942 (59.55%) aligned 0 times 4385850 (30.50%) aligned exactly 1 time 1431032 (9.95%) aligned >1 times 88.90% overall alignment rate Time searching: 00:48:58 Overall time: 00:48:58 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 28 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 4734080 / 31276316 = 0.1514 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 12:25:15: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12178866/SRX12178866.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12178866/SRX12178866.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12178866/SRX12178866.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12178866/SRX12178866.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 12:25:15: #1 read tag files... INFO @ Tue, 02 Aug 2022 12:25:15: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 12:25:21: 1000000 INFO @ Tue, 02 Aug 2022 12:25:27: 2000000 INFO @ Tue, 02 Aug 2022 12:25:33: 3000000 INFO @ Tue, 02 Aug 2022 12:25:38: 4000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 12:25:44: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12178866/SRX12178866.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12178866/SRX12178866.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12178866/SRX12178866.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12178866/SRX12178866.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 12:25:44: #1 read tag files... INFO @ Tue, 02 Aug 2022 12:25:44: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 12:25:44: 5000000 INFO @ Tue, 02 Aug 2022 12:25:51: 1000000 INFO @ Tue, 02 Aug 2022 12:25:51: 6000000 INFO @ Tue, 02 Aug 2022 12:25:57: 2000000 INFO @ Tue, 02 Aug 2022 12:25:57: 7000000 INFO @ Tue, 02 Aug 2022 12:26:04: 8000000 INFO @ Tue, 02 Aug 2022 12:26:04: 3000000 INFO @ Tue, 02 Aug 2022 12:26:10: 9000000 INFO @ Tue, 02 Aug 2022 12:26:10: 4000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 12:26:14: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12178866/SRX12178866.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12178866/SRX12178866.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12178866/SRX12178866.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12178866/SRX12178866.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 12:26:14: #1 read tag files... INFO @ Tue, 02 Aug 2022 12:26:14: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 12:26:17: 10000000 INFO @ Tue, 02 Aug 2022 12:26:17: 5000000 INFO @ Tue, 02 Aug 2022 12:26:22: 1000000 INFO @ Tue, 02 Aug 2022 12:26:24: 11000000 INFO @ Tue, 02 Aug 2022 12:26:24: 6000000 INFO @ Tue, 02 Aug 2022 12:26:29: 2000000 INFO @ Tue, 02 Aug 2022 12:26:31: 12000000 INFO @ Tue, 02 Aug 2022 12:26:31: 7000000 INFO @ Tue, 02 Aug 2022 12:26:36: 3000000 INFO @ Tue, 02 Aug 2022 12:26:38: 13000000 INFO @ Tue, 02 Aug 2022 12:26:38: 8000000 INFO @ Tue, 02 Aug 2022 12:26:43: 4000000 INFO @ Tue, 02 Aug 2022 12:26:45: 14000000 INFO @ Tue, 02 Aug 2022 12:26:45: 9000000 INFO @ Tue, 02 Aug 2022 12:26:50: 5000000 INFO @ Tue, 02 Aug 2022 12:26:51: 15000000 INFO @ Tue, 02 Aug 2022 12:26:52: 10000000 INFO @ Tue, 02 Aug 2022 12:26:58: 6000000 INFO @ Tue, 02 Aug 2022 12:26:58: 16000000 INFO @ Tue, 02 Aug 2022 12:26:59: 11000000 INFO @ Tue, 02 Aug 2022 12:27:05: 7000000 INFO @ Tue, 02 Aug 2022 12:27:05: 17000000 INFO @ Tue, 02 Aug 2022 12:27:06: 12000000 INFO @ Tue, 02 Aug 2022 12:27:11: 8000000 INFO @ Tue, 02 Aug 2022 12:27:12: 13000000 INFO @ Tue, 02 Aug 2022 12:27:12: 18000000 INFO @ Tue, 02 Aug 2022 12:27:18: 9000000 INFO @ Tue, 02 Aug 2022 12:27:18: 14000000 INFO @ Tue, 02 Aug 2022 12:27:18: 19000000 INFO @ Tue, 02 Aug 2022 12:27:25: 10000000 INFO @ Tue, 02 Aug 2022 12:27:25: 15000000 INFO @ Tue, 02 Aug 2022 12:27:26: 20000000 INFO @ Tue, 02 Aug 2022 12:27:33: 11000000 INFO @ Tue, 02 Aug 2022 12:27:33: 16000000 INFO @ Tue, 02 Aug 2022 12:27:33: 21000000 INFO @ Tue, 02 Aug 2022 12:27:40: 12000000 INFO @ Tue, 02 Aug 2022 12:27:40: 17000000 INFO @ Tue, 02 Aug 2022 12:27:41: 22000000 INFO @ Tue, 02 Aug 2022 12:27:48: 13000000 INFO @ Tue, 02 Aug 2022 12:27:48: 23000000 INFO @ Tue, 02 Aug 2022 12:27:48: 18000000 INFO @ Tue, 02 Aug 2022 12:27:55: 24000000 INFO @ Tue, 02 Aug 2022 12:27:56: 14000000 INFO @ Tue, 02 Aug 2022 12:27:56: 19000000 INFO @ Tue, 02 Aug 2022 12:28:03: 25000000 INFO @ Tue, 02 Aug 2022 12:28:03: 15000000 INFO @ Tue, 02 Aug 2022 12:28:04: 20000000 INFO @ Tue, 02 Aug 2022 12:28:10: 26000000 INFO @ Tue, 02 Aug 2022 12:28:10: 16000000 INFO @ Tue, 02 Aug 2022 12:28:11: 21000000 INFO @ Tue, 02 Aug 2022 12:28:18: 27000000 INFO @ Tue, 02 Aug 2022 12:28:19: 22000000 INFO @ Tue, 02 Aug 2022 12:28:20: 17000000 INFO @ Tue, 02 Aug 2022 12:28:25: 28000000 INFO @ Tue, 02 Aug 2022 12:28:26: 23000000 INFO @ Tue, 02 Aug 2022 12:28:27: 18000000 INFO @ Tue, 02 Aug 2022 12:28:32: 29000000 INFO @ Tue, 02 Aug 2022 12:28:33: 24000000 INFO @ Tue, 02 Aug 2022 12:28:35: 19000000 INFO @ Tue, 02 Aug 2022 12:28:39: 30000000 INFO @ Tue, 02 Aug 2022 12:28:40: 25000000 INFO @ Tue, 02 Aug 2022 12:28:44: 20000000 INFO @ Tue, 02 Aug 2022 12:28:45: 31000000 INFO @ Tue, 02 Aug 2022 12:28:48: 26000000 INFO @ Tue, 02 Aug 2022 12:28:51: 21000000 INFO @ Tue, 02 Aug 2022 12:28:52: 32000000 INFO @ Tue, 02 Aug 2022 12:28:55: 27000000 INFO @ Tue, 02 Aug 2022 12:28:59: 22000000 INFO @ Tue, 02 Aug 2022 12:28:59: 33000000 INFO @ Tue, 02 Aug 2022 12:29:02: 28000000 INFO @ Tue, 02 Aug 2022 12:29:06: 23000000 INFO @ Tue, 02 Aug 2022 12:29:06: 34000000 INFO @ Tue, 02 Aug 2022 12:29:09: 29000000 INFO @ Tue, 02 Aug 2022 12:29:13: 24000000 INFO @ Tue, 02 Aug 2022 12:29:13: 35000000 INFO @ Tue, 02 Aug 2022 12:29:16: 30000000 INFO @ Tue, 02 Aug 2022 12:29:20: 25000000 INFO @ Tue, 02 Aug 2022 12:29:21: 36000000 INFO @ Tue, 02 Aug 2022 12:29:23: 31000000 INFO @ Tue, 02 Aug 2022 12:29:27: 26000000 INFO @ Tue, 02 Aug 2022 12:29:28: 37000000 INFO @ Tue, 02 Aug 2022 12:29:30: 32000000 INFO @ Tue, 02 Aug 2022 12:29:35: 27000000 INFO @ Tue, 02 Aug 2022 12:29:35: 38000000 INFO @ Tue, 02 Aug 2022 12:29:37: 33000000 INFO @ Tue, 02 Aug 2022 12:29:42: 28000000 INFO @ Tue, 02 Aug 2022 12:29:42: 39000000 INFO @ Tue, 02 Aug 2022 12:29:44: 34000000 INFO @ Tue, 02 Aug 2022 12:29:49: 40000000 INFO @ Tue, 02 Aug 2022 12:29:49: 29000000 INFO @ Tue, 02 Aug 2022 12:29:52: 35000000 INFO @ Tue, 02 Aug 2022 12:29:56: 41000000 INFO @ Tue, 02 Aug 2022 12:29:56: 30000000 INFO @ Tue, 02 Aug 2022 12:29:59: 36000000 INFO @ Tue, 02 Aug 2022 12:30:03: 42000000 INFO @ Tue, 02 Aug 2022 12:30:03: 31000000 INFO @ Tue, 02 Aug 2022 12:30:06: 37000000 INFO @ Tue, 02 Aug 2022 12:30:10: 43000000 INFO @ Tue, 02 Aug 2022 12:30:10: 32000000 INFO @ Tue, 02 Aug 2022 12:30:13: 38000000 INFO @ Tue, 02 Aug 2022 12:30:17: 44000000 INFO @ Tue, 02 Aug 2022 12:30:17: 33000000 INFO @ Tue, 02 Aug 2022 12:30:21: 39000000 INFO @ Tue, 02 Aug 2022 12:30:24: 45000000 INFO @ Tue, 02 Aug 2022 12:30:24: 34000000 INFO @ Tue, 02 Aug 2022 12:30:28: 40000000 INFO @ Tue, 02 Aug 2022 12:30:31: 46000000 INFO @ Tue, 02 Aug 2022 12:30:31: 35000000 INFO @ Tue, 02 Aug 2022 12:30:35: 41000000 INFO @ Tue, 02 Aug 2022 12:30:38: 47000000 INFO @ Tue, 02 Aug 2022 12:30:39: 36000000 INFO @ Tue, 02 Aug 2022 12:30:42: 42000000 INFO @ Tue, 02 Aug 2022 12:30:45: 48000000 INFO @ Tue, 02 Aug 2022 12:30:46: 37000000 INFO @ Tue, 02 Aug 2022 12:30:49: 43000000 INFO @ Tue, 02 Aug 2022 12:30:52: 49000000 INFO @ Tue, 02 Aug 2022 12:30:53: 38000000 INFO @ Tue, 02 Aug 2022 12:30:56: 44000000 INFO @ Tue, 02 Aug 2022 12:30:59: 50000000 INFO @ Tue, 02 Aug 2022 12:31:00: 39000000 INFO @ Tue, 02 Aug 2022 12:31:03: 45000000 INFO @ Tue, 02 Aug 2022 12:31:06: 51000000 INFO @ Tue, 02 Aug 2022 12:31:07: 40000000 INFO @ Tue, 02 Aug 2022 12:31:10: 46000000 INFO @ Tue, 02 Aug 2022 12:31:13: 52000000 INFO @ Tue, 02 Aug 2022 12:31:14: 41000000 INFO @ Tue, 02 Aug 2022 12:31:17: 47000000 INFO @ Tue, 02 Aug 2022 12:31:21: 53000000 INFO @ Tue, 02 Aug 2022 12:31:22: 42000000 INFO @ Tue, 02 Aug 2022 12:31:24: 48000000 INFO @ Tue, 02 Aug 2022 12:31:28: 54000000 INFO @ Tue, 02 Aug 2022 12:31:29: 43000000 INFO @ Tue, 02 Aug 2022 12:31:31: 49000000 INFO @ Tue, 02 Aug 2022 12:31:35: 55000000 INFO @ Tue, 02 Aug 2022 12:31:36: 44000000 INFO @ Tue, 02 Aug 2022 12:31:39: 50000000 INFO @ Tue, 02 Aug 2022 12:31:42: 56000000 INFO @ Tue, 02 Aug 2022 12:31:43: 45000000 INFO @ Tue, 02 Aug 2022 12:31:46: 51000000 INFO @ Tue, 02 Aug 2022 12:31:49: 57000000 INFO @ Tue, 02 Aug 2022 12:31:50: 46000000 INFO @ Tue, 02 Aug 2022 12:31:53: 52000000 INFO @ Tue, 02 Aug 2022 12:31:56: 58000000 INFO @ Tue, 02 Aug 2022 12:31:57: 47000000 INFO @ Tue, 02 Aug 2022 12:32:00: 53000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 02 Aug 2022 12:32:03: 59000000 INFO @ Tue, 02 Aug 2022 12:32:03: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 12:32:03: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 12:32:03: #1 total tags in treatment: 21831693 INFO @ Tue, 02 Aug 2022 12:32:03: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 12:32:03: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 12:32:04: #1 tags after filtering in treatment: 13521315 INFO @ Tue, 02 Aug 2022 12:32:04: #1 Redundant rate of treatment: 0.38 INFO @ Tue, 02 Aug 2022 12:32:04: #1 finished! INFO @ Tue, 02 Aug 2022 12:32:04: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 12:32:04: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 12:32:04: 48000000 INFO @ Tue, 02 Aug 2022 12:32:05: #2 number of paired peaks: 2461 INFO @ Tue, 02 Aug 2022 12:32:05: start model_add_line... INFO @ Tue, 02 Aug 2022 12:32:05: start X-correlation... INFO @ Tue, 02 Aug 2022 12:32:05: end of X-cor INFO @ Tue, 02 Aug 2022 12:32:05: #2 finished! INFO @ Tue, 02 Aug 2022 12:32:05: #2 predicted fragment length is 78 bps INFO @ Tue, 02 Aug 2022 12:32:05: #2 alternative fragment length(s) may be 78 bps INFO @ Tue, 02 Aug 2022 12:32:05: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12178866/SRX12178866.05_model.r WARNING @ Tue, 02 Aug 2022 12:32:05: #2 Since the d (78) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 12:32:05: #2 You may need to consider one of the other alternative d(s): 78 WARNING @ Tue, 02 Aug 2022 12:32:05: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 12:32:05: #3 Call peaks... INFO @ Tue, 02 Aug 2022 12:32:05: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 12:32:07: 54000000 INFO @ Tue, 02 Aug 2022 12:32:11: 49000000 INFO @ Tue, 02 Aug 2022 12:32:14: 55000000 INFO @ Tue, 02 Aug 2022 12:32:18: 50000000 INFO @ Tue, 02 Aug 2022 12:32:21: 56000000 INFO @ Tue, 02 Aug 2022 12:32:25: 51000000 INFO @ Tue, 02 Aug 2022 12:32:28: 57000000 INFO @ Tue, 02 Aug 2022 12:32:32: 52000000 INFO @ Tue, 02 Aug 2022 12:32:33: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 12:32:34: 58000000 INFO @ Tue, 02 Aug 2022 12:32:39: 53000000 INFO @ Tue, 02 Aug 2022 12:32:41: 59000000 INFO @ Tue, 02 Aug 2022 12:32:42: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 12:32:42: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 12:32:42: #1 total tags in treatment: 21831693 INFO @ Tue, 02 Aug 2022 12:32:42: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 12:32:42: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 12:32:42: #1 tags after filtering in treatment: 13521315 INFO @ Tue, 02 Aug 2022 12:32:42: #1 Redundant rate of treatment: 0.38 INFO @ Tue, 02 Aug 2022 12:32:42: #1 finished! INFO @ Tue, 02 Aug 2022 12:32:42: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 12:32:42: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 12:32:43: #2 number of paired peaks: 2461 INFO @ Tue, 02 Aug 2022 12:32:43: start model_add_line... INFO @ Tue, 02 Aug 2022 12:32:44: start X-correlation... INFO @ Tue, 02 Aug 2022 12:32:44: end of X-cor INFO @ Tue, 02 Aug 2022 12:32:44: #2 finished! INFO @ Tue, 02 Aug 2022 12:32:44: #2 predicted fragment length is 78 bps INFO @ Tue, 02 Aug 2022 12:32:44: #2 alternative fragment length(s) may be 78 bps INFO @ Tue, 02 Aug 2022 12:32:44: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12178866/SRX12178866.10_model.r WARNING @ Tue, 02 Aug 2022 12:32:44: #2 Since the d (78) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 12:32:44: #2 You may need to consider one of the other alternative d(s): 78 WARNING @ Tue, 02 Aug 2022 12:32:44: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 12:32:44: #3 Call peaks... INFO @ Tue, 02 Aug 2022 12:32:44: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 12:32:45: 54000000 INFO @ Tue, 02 Aug 2022 12:32:49: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12178866/SRX12178866.05_peaks.xls INFO @ Tue, 02 Aug 2022 12:32:49: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12178866/SRX12178866.05_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 12:32:49: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12178866/SRX12178866.05_summits.bed INFO @ Tue, 02 Aug 2022 12:32:49: Done! pass1 - making usageList (15 chroms): 4 millis pass2 - checking and writing primary data (19822 records, 4 fields): 39 millis CompletedMACS2peakCalling INFO @ Tue, 02 Aug 2022 12:32:52: 55000000 INFO @ Tue, 02 Aug 2022 12:32:57: 56000000 INFO @ Tue, 02 Aug 2022 12:33:03: 57000000 INFO @ Tue, 02 Aug 2022 12:33:09: 58000000 INFO @ Tue, 02 Aug 2022 12:33:11: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 12:33:15: 59000000 INFO @ Tue, 02 Aug 2022 12:33:16: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 12:33:16: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 12:33:16: #1 total tags in treatment: 21831693 INFO @ Tue, 02 Aug 2022 12:33:16: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 12:33:16: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 12:33:16: #1 tags after filtering in treatment: 13521315 INFO @ Tue, 02 Aug 2022 12:33:16: #1 Redundant rate of treatment: 0.38 INFO @ Tue, 02 Aug 2022 12:33:16: #1 finished! INFO @ Tue, 02 Aug 2022 12:33:16: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 12:33:16: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 12:33:17: #2 number of paired peaks: 2461 INFO @ Tue, 02 Aug 2022 12:33:17: start model_add_line... INFO @ Tue, 02 Aug 2022 12:33:18: start X-correlation... INFO @ Tue, 02 Aug 2022 12:33:18: end of X-cor INFO @ Tue, 02 Aug 2022 12:33:18: #2 finished! INFO @ Tue, 02 Aug 2022 12:33:18: #2 predicted fragment length is 78 bps INFO @ Tue, 02 Aug 2022 12:33:18: #2 alternative fragment length(s) may be 78 bps INFO @ Tue, 02 Aug 2022 12:33:18: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12178866/SRX12178866.20_model.r WARNING @ Tue, 02 Aug 2022 12:33:18: #2 Since the d (78) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 12:33:18: #2 You may need to consider one of the other alternative d(s): 78 WARNING @ Tue, 02 Aug 2022 12:33:18: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 12:33:18: #3 Call peaks... INFO @ Tue, 02 Aug 2022 12:33:18: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 12:33:25: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12178866/SRX12178866.10_peaks.xls INFO @ Tue, 02 Aug 2022 12:33:26: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12178866/SRX12178866.10_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 12:33:26: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12178866/SRX12178866.10_summits.bed INFO @ Tue, 02 Aug 2022 12:33:26: Done! BigWig に変換しました。 pass1 - making usageList (14 chroms): 2 millis pass2 - checking and writing primary data (11307 records, 4 fields): 143 millis CompletedMACS2peakCalling INFO @ Tue, 02 Aug 2022 12:33:44: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 12:33:58: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12178866/SRX12178866.20_peaks.xls INFO @ Tue, 02 Aug 2022 12:33:58: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12178866/SRX12178866.20_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 12:33:58: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12178866/SRX12178866.20_summits.bed INFO @ Tue, 02 Aug 2022 12:33:58: Done! pass1 - making usageList (13 chroms): 1 millis pass2 - checking and writing primary data (2676 records, 4 fields): 72 millis CompletedMACS2peakCalling