Job ID = 16440679 SRX = SRX12178847 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2022-08-02T08:45:40 prefetch.2.10.7: 1) Downloading 'SRR15888067'... 2022-08-02T08:45:40 prefetch.2.10.7: Downloading via HTTPS... 2022-08-02T08:47:30 prefetch.2.10.7: HTTPS download succeed 2022-08-02T08:47:30 prefetch.2.10.7: 1) 'SRR15888067' was downloaded successfully 2022-08-02T08:47:30 prefetch.2.10.7: 'SRR15888067' has 0 unresolved dependencies Read 32794838 spots for SRR15888067/SRR15888067.sra Written 32794838 spots for SRR15888067/SRR15888067.sra fastq に変換しました。 bowtie でマッピング中... Your job 16441133 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:48:09 32794838 reads; of these: 32794838 (100.00%) were paired; of these: 9666921 (29.48%) aligned concordantly 0 times 20066428 (61.19%) aligned concordantly exactly 1 time 3061489 (9.34%) aligned concordantly >1 times ---- 9666921 pairs aligned concordantly 0 times; of these: 4008263 (41.46%) aligned discordantly 1 time ---- 5658658 pairs aligned 0 times concordantly or discordantly; of these: 11317316 mates make up the pairs; of these: 6953461 (61.44%) aligned 0 times 3250055 (28.72%) aligned exactly 1 time 1113800 (9.84%) aligned >1 times 89.40% overall alignment rate Time searching: 00:48:09 Overall time: 00:48:09 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 24 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 3896056 / 27048411 = 0.1440 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 19:01:26: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12178847/SRX12178847.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12178847/SRX12178847.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12178847/SRX12178847.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12178847/SRX12178847.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 19:01:26: #1 read tag files... INFO @ Tue, 02 Aug 2022 19:01:26: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 19:01:33: 1000000 INFO @ Tue, 02 Aug 2022 19:01:40: 2000000 INFO @ Tue, 02 Aug 2022 19:01:47: 3000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 19:01:54: 4000000 INFO @ Tue, 02 Aug 2022 19:01:56: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12178847/SRX12178847.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12178847/SRX12178847.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12178847/SRX12178847.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12178847/SRX12178847.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 19:01:56: #1 read tag files... INFO @ Tue, 02 Aug 2022 19:01:56: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 19:02:01: 5000000 INFO @ Tue, 02 Aug 2022 19:02:04: 1000000 INFO @ Tue, 02 Aug 2022 19:02:09: 6000000 INFO @ Tue, 02 Aug 2022 19:02:13: 2000000 INFO @ Tue, 02 Aug 2022 19:02:16: 7000000 INFO @ Tue, 02 Aug 2022 19:02:21: 3000000 INFO @ Tue, 02 Aug 2022 19:02:23: 8000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 19:02:28: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12178847/SRX12178847.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12178847/SRX12178847.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12178847/SRX12178847.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12178847/SRX12178847.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 19:02:28: #1 read tag files... INFO @ Tue, 02 Aug 2022 19:02:28: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 19:02:30: 4000000 INFO @ Tue, 02 Aug 2022 19:02:30: 9000000 INFO @ Tue, 02 Aug 2022 19:02:37: 1000000 INFO @ Tue, 02 Aug 2022 19:02:38: 10000000 INFO @ Tue, 02 Aug 2022 19:02:38: 5000000 INFO @ Tue, 02 Aug 2022 19:02:46: 2000000 INFO @ Tue, 02 Aug 2022 19:02:46: 11000000 INFO @ Tue, 02 Aug 2022 19:02:47: 6000000 INFO @ Tue, 02 Aug 2022 19:02:54: 12000000 INFO @ Tue, 02 Aug 2022 19:02:54: 3000000 INFO @ Tue, 02 Aug 2022 19:02:56: 7000000 INFO @ Tue, 02 Aug 2022 19:03:02: 13000000 INFO @ Tue, 02 Aug 2022 19:03:03: 4000000 INFO @ Tue, 02 Aug 2022 19:03:05: 8000000 INFO @ Tue, 02 Aug 2022 19:03:10: 14000000 INFO @ Tue, 02 Aug 2022 19:03:12: 5000000 INFO @ Tue, 02 Aug 2022 19:03:13: 9000000 INFO @ Tue, 02 Aug 2022 19:03:18: 15000000 INFO @ Tue, 02 Aug 2022 19:03:21: 6000000 INFO @ Tue, 02 Aug 2022 19:03:21: 10000000 INFO @ Tue, 02 Aug 2022 19:03:26: 16000000 INFO @ Tue, 02 Aug 2022 19:03:30: 7000000 INFO @ Tue, 02 Aug 2022 19:03:30: 11000000 INFO @ Tue, 02 Aug 2022 19:03:34: 17000000 INFO @ Tue, 02 Aug 2022 19:03:39: 8000000 INFO @ Tue, 02 Aug 2022 19:03:40: 12000000 INFO @ Tue, 02 Aug 2022 19:03:41: 18000000 INFO @ Tue, 02 Aug 2022 19:03:48: 9000000 INFO @ Tue, 02 Aug 2022 19:03:49: 13000000 INFO @ Tue, 02 Aug 2022 19:03:49: 19000000 INFO @ Tue, 02 Aug 2022 19:03:55: 10000000 INFO @ Tue, 02 Aug 2022 19:03:57: 14000000 INFO @ Tue, 02 Aug 2022 19:03:58: 20000000 INFO @ Tue, 02 Aug 2022 19:04:04: 11000000 INFO @ Tue, 02 Aug 2022 19:04:05: 15000000 INFO @ Tue, 02 Aug 2022 19:04:06: 21000000 INFO @ Tue, 02 Aug 2022 19:04:13: 12000000 INFO @ Tue, 02 Aug 2022 19:04:14: 16000000 INFO @ Tue, 02 Aug 2022 19:04:14: 22000000 INFO @ Tue, 02 Aug 2022 19:04:22: 13000000 INFO @ Tue, 02 Aug 2022 19:04:23: 17000000 INFO @ Tue, 02 Aug 2022 19:04:23: 23000000 INFO @ Tue, 02 Aug 2022 19:04:30: 14000000 INFO @ Tue, 02 Aug 2022 19:04:31: 24000000 INFO @ Tue, 02 Aug 2022 19:04:31: 18000000 INFO @ Tue, 02 Aug 2022 19:04:38: 15000000 INFO @ Tue, 02 Aug 2022 19:04:39: 25000000 INFO @ Tue, 02 Aug 2022 19:04:40: 19000000 INFO @ Tue, 02 Aug 2022 19:04:46: 16000000 INFO @ Tue, 02 Aug 2022 19:04:47: 26000000 INFO @ Tue, 02 Aug 2022 19:04:49: 20000000 INFO @ Tue, 02 Aug 2022 19:04:54: 17000000 INFO @ Tue, 02 Aug 2022 19:04:55: 27000000 INFO @ Tue, 02 Aug 2022 19:04:58: 21000000 INFO @ Tue, 02 Aug 2022 19:05:02: 28000000 INFO @ Tue, 02 Aug 2022 19:05:03: 18000000 INFO @ Tue, 02 Aug 2022 19:05:06: 22000000 INFO @ Tue, 02 Aug 2022 19:05:10: 29000000 INFO @ Tue, 02 Aug 2022 19:05:11: 19000000 INFO @ Tue, 02 Aug 2022 19:05:15: 23000000 INFO @ Tue, 02 Aug 2022 19:05:18: 30000000 INFO @ Tue, 02 Aug 2022 19:05:19: 20000000 INFO @ Tue, 02 Aug 2022 19:05:23: 24000000 INFO @ Tue, 02 Aug 2022 19:05:25: 31000000 INFO @ Tue, 02 Aug 2022 19:05:27: 21000000 INFO @ Tue, 02 Aug 2022 19:05:31: 25000000 INFO @ Tue, 02 Aug 2022 19:05:33: 32000000 INFO @ Tue, 02 Aug 2022 19:05:36: 22000000 INFO @ Tue, 02 Aug 2022 19:05:40: 26000000 INFO @ Tue, 02 Aug 2022 19:05:40: 33000000 INFO @ Tue, 02 Aug 2022 19:05:45: 23000000 INFO @ Tue, 02 Aug 2022 19:05:48: 34000000 INFO @ Tue, 02 Aug 2022 19:05:49: 27000000 INFO @ Tue, 02 Aug 2022 19:05:53: 24000000 INFO @ Tue, 02 Aug 2022 19:05:55: 35000000 INFO @ Tue, 02 Aug 2022 19:05:57: 28000000 INFO @ Tue, 02 Aug 2022 19:06:01: 25000000 INFO @ Tue, 02 Aug 2022 19:06:03: 36000000 INFO @ Tue, 02 Aug 2022 19:06:06: 29000000 INFO @ Tue, 02 Aug 2022 19:06:10: 26000000 INFO @ Tue, 02 Aug 2022 19:06:11: 37000000 INFO @ Tue, 02 Aug 2022 19:06:15: 30000000 INFO @ Tue, 02 Aug 2022 19:06:18: 27000000 INFO @ Tue, 02 Aug 2022 19:06:19: 38000000 INFO @ Tue, 02 Aug 2022 19:06:23: 31000000 INFO @ Tue, 02 Aug 2022 19:06:27: 28000000 INFO @ Tue, 02 Aug 2022 19:06:27: 39000000 INFO @ Tue, 02 Aug 2022 19:06:32: 32000000 INFO @ Tue, 02 Aug 2022 19:06:35: 29000000 INFO @ Tue, 02 Aug 2022 19:06:35: 40000000 INFO @ Tue, 02 Aug 2022 19:06:41: 33000000 INFO @ Tue, 02 Aug 2022 19:06:43: 30000000 INFO @ Tue, 02 Aug 2022 19:06:43: 41000000 INFO @ Tue, 02 Aug 2022 19:06:50: 34000000 INFO @ Tue, 02 Aug 2022 19:06:51: 31000000 INFO @ Tue, 02 Aug 2022 19:06:52: 42000000 INFO @ Tue, 02 Aug 2022 19:06:59: 32000000 INFO @ Tue, 02 Aug 2022 19:06:59: 35000000 INFO @ Tue, 02 Aug 2022 19:07:00: 43000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 02 Aug 2022 19:07:07: 33000000 INFO @ Tue, 02 Aug 2022 19:07:08: 36000000 INFO @ Tue, 02 Aug 2022 19:07:08: 44000000 INFO @ Tue, 02 Aug 2022 19:07:14: 34000000 INFO @ Tue, 02 Aug 2022 19:07:15: 45000000 INFO @ Tue, 02 Aug 2022 19:07:16: 37000000 INFO @ Tue, 02 Aug 2022 19:07:22: 35000000 INFO @ Tue, 02 Aug 2022 19:07:23: 46000000 INFO @ Tue, 02 Aug 2022 19:07:25: 38000000 INFO @ Tue, 02 Aug 2022 19:07:29: 36000000 INFO @ Tue, 02 Aug 2022 19:07:30: 47000000 INFO @ Tue, 02 Aug 2022 19:07:33: 39000000 INFO @ Tue, 02 Aug 2022 19:07:37: 37000000 INFO @ Tue, 02 Aug 2022 19:07:38: 48000000 INFO @ Tue, 02 Aug 2022 19:07:41: 40000000 INFO @ Tue, 02 Aug 2022 19:07:44: 38000000 INFO @ Tue, 02 Aug 2022 19:07:45: 49000000 INFO @ Tue, 02 Aug 2022 19:07:50: 41000000 INFO @ Tue, 02 Aug 2022 19:07:52: 39000000 INFO @ Tue, 02 Aug 2022 19:07:53: 50000000 INFO @ Tue, 02 Aug 2022 19:07:58: 42000000 INFO @ Tue, 02 Aug 2022 19:08:00: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 19:08:00: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 19:08:00: #1 total tags in treatment: 19601214 INFO @ Tue, 02 Aug 2022 19:08:00: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 19:08:00: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 19:08:00: 40000000 INFO @ Tue, 02 Aug 2022 19:08:00: #1 tags after filtering in treatment: 13272370 INFO @ Tue, 02 Aug 2022 19:08:00: #1 Redundant rate of treatment: 0.32 INFO @ Tue, 02 Aug 2022 19:08:00: #1 finished! INFO @ Tue, 02 Aug 2022 19:08:00: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 19:08:00: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 19:08:02: #2 number of paired peaks: 1621 INFO @ Tue, 02 Aug 2022 19:08:02: start model_add_line... INFO @ Tue, 02 Aug 2022 19:08:02: start X-correlation... INFO @ Tue, 02 Aug 2022 19:08:02: end of X-cor INFO @ Tue, 02 Aug 2022 19:08:02: #2 finished! INFO @ Tue, 02 Aug 2022 19:08:02: #2 predicted fragment length is 68 bps INFO @ Tue, 02 Aug 2022 19:08:02: #2 alternative fragment length(s) may be 68 bps INFO @ Tue, 02 Aug 2022 19:08:02: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12178847/SRX12178847.05_model.r WARNING @ Tue, 02 Aug 2022 19:08:02: #2 Since the d (68) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 19:08:02: #2 You may need to consider one of the other alternative d(s): 68 WARNING @ Tue, 02 Aug 2022 19:08:02: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 19:08:02: #3 Call peaks... INFO @ Tue, 02 Aug 2022 19:08:02: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 19:08:07: 43000000 INFO @ Tue, 02 Aug 2022 19:08:08: 41000000 INFO @ Tue, 02 Aug 2022 19:08:16: 42000000 INFO @ Tue, 02 Aug 2022 19:08:16: 44000000 INFO @ Tue, 02 Aug 2022 19:08:24: 43000000 INFO @ Tue, 02 Aug 2022 19:08:25: 45000000 INFO @ Tue, 02 Aug 2022 19:08:32: 44000000 INFO @ Tue, 02 Aug 2022 19:08:34: 46000000 INFO @ Tue, 02 Aug 2022 19:08:40: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 19:08:40: 45000000 BigWig に変換しました。 INFO @ Tue, 02 Aug 2022 19:08:43: 47000000 INFO @ Tue, 02 Aug 2022 19:08:48: 46000000 INFO @ Tue, 02 Aug 2022 19:08:52: 48000000 INFO @ Tue, 02 Aug 2022 19:08:55: 47000000 INFO @ Tue, 02 Aug 2022 19:09:00: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12178847/SRX12178847.05_peaks.xls INFO @ Tue, 02 Aug 2022 19:09:00: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12178847/SRX12178847.05_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 19:09:00: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12178847/SRX12178847.05_summits.bed INFO @ Tue, 02 Aug 2022 19:09:00: Done! pass1 - making usageList (14 chroms): 4 millis pass2 - checking and writing primary data (17798 records, 4 fields): 26 millis CompletedMACS2peakCalling INFO @ Tue, 02 Aug 2022 19:09:01: 49000000 INFO @ Tue, 02 Aug 2022 19:09:03: 48000000 INFO @ Tue, 02 Aug 2022 19:09:10: 50000000 INFO @ Tue, 02 Aug 2022 19:09:11: 49000000 INFO @ Tue, 02 Aug 2022 19:09:19: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 19:09:19: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 19:09:19: #1 total tags in treatment: 19601214 INFO @ Tue, 02 Aug 2022 19:09:19: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 19:09:19: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 19:09:19: #1 tags after filtering in treatment: 13272370 INFO @ Tue, 02 Aug 2022 19:09:19: #1 Redundant rate of treatment: 0.32 INFO @ Tue, 02 Aug 2022 19:09:19: #1 finished! INFO @ Tue, 02 Aug 2022 19:09:19: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 19:09:19: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 19:09:20: 50000000 INFO @ Tue, 02 Aug 2022 19:09:20: #2 number of paired peaks: 1621 INFO @ Tue, 02 Aug 2022 19:09:20: start model_add_line... INFO @ Tue, 02 Aug 2022 19:09:21: start X-correlation... INFO @ Tue, 02 Aug 2022 19:09:21: end of X-cor INFO @ Tue, 02 Aug 2022 19:09:21: #2 finished! INFO @ Tue, 02 Aug 2022 19:09:21: #2 predicted fragment length is 68 bps INFO @ Tue, 02 Aug 2022 19:09:21: #2 alternative fragment length(s) may be 68 bps INFO @ Tue, 02 Aug 2022 19:09:21: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12178847/SRX12178847.10_model.r WARNING @ Tue, 02 Aug 2022 19:09:21: #2 Since the d (68) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 19:09:21: #2 You may need to consider one of the other alternative d(s): 68 WARNING @ Tue, 02 Aug 2022 19:09:21: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 19:09:21: #3 Call peaks... INFO @ Tue, 02 Aug 2022 19:09:21: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 19:09:27: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 19:09:27: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 19:09:27: #1 total tags in treatment: 19601214 INFO @ Tue, 02 Aug 2022 19:09:27: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 19:09:27: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 19:09:27: #1 tags after filtering in treatment: 13272370 INFO @ Tue, 02 Aug 2022 19:09:27: #1 Redundant rate of treatment: 0.32 INFO @ Tue, 02 Aug 2022 19:09:27: #1 finished! INFO @ Tue, 02 Aug 2022 19:09:27: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 19:09:27: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 19:09:29: #2 number of paired peaks: 1621 INFO @ Tue, 02 Aug 2022 19:09:29: start model_add_line... INFO @ Tue, 02 Aug 2022 19:09:29: start X-correlation... INFO @ Tue, 02 Aug 2022 19:09:29: end of X-cor INFO @ Tue, 02 Aug 2022 19:09:29: #2 finished! INFO @ Tue, 02 Aug 2022 19:09:29: #2 predicted fragment length is 68 bps INFO @ Tue, 02 Aug 2022 19:09:29: #2 alternative fragment length(s) may be 68 bps INFO @ Tue, 02 Aug 2022 19:09:29: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12178847/SRX12178847.20_model.r WARNING @ Tue, 02 Aug 2022 19:09:29: #2 Since the d (68) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 19:09:29: #2 You may need to consider one of the other alternative d(s): 68 WARNING @ Tue, 02 Aug 2022 19:09:29: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 19:09:29: #3 Call peaks... INFO @ Tue, 02 Aug 2022 19:09:29: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 19:10:01: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 19:10:09: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 19:10:24: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12178847/SRX12178847.10_peaks.xls INFO @ Tue, 02 Aug 2022 19:10:24: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12178847/SRX12178847.10_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 19:10:24: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12178847/SRX12178847.10_summits.bed INFO @ Tue, 02 Aug 2022 19:10:24: Done! pass1 - making usageList (14 chroms): 4 millis pass2 - checking and writing primary data (9773 records, 4 fields): 16 millis CompletedMACS2peakCalling INFO @ Tue, 02 Aug 2022 19:10:30: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12178847/SRX12178847.20_peaks.xls INFO @ Tue, 02 Aug 2022 19:10:30: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12178847/SRX12178847.20_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 19:10:30: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12178847/SRX12178847.20_summits.bed INFO @ Tue, 02 Aug 2022 19:10:30: Done! pass1 - making usageList (12 chroms): 2 millis pass2 - checking and writing primary data (2284 records, 4 fields): 9 millis CompletedMACS2peakCalling