Job ID = 16440296 SRX = SRX12178845 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2022-08-02T08:43:06 prefetch.2.10.7: 1) Downloading 'SRR15888069'... 2022-08-02T08:43:06 prefetch.2.10.7: Downloading via HTTPS... 2022-08-02T08:46:04 prefetch.2.10.7: HTTPS download succeed 2022-08-02T08:46:04 prefetch.2.10.7: 1) 'SRR15888069' was downloaded successfully 2022-08-02T08:46:04 prefetch.2.10.7: 'SRR15888069' has 0 unresolved dependencies Read 63597379 spots for SRR15888069/SRR15888069.sra Written 63597379 spots for SRR15888069/SRR15888069.sra fastq に変換しました。 bowtie でマッピング中... Your job 16441194 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:58:01 63597379 reads; of these: 63597379 (100.00%) were paired; of these: 22950607 (36.09%) aligned concordantly 0 times 35502695 (55.82%) aligned concordantly exactly 1 time 5144077 (8.09%) aligned concordantly >1 times ---- 22950607 pairs aligned concordantly 0 times; of these: 9902021 (43.14%) aligned discordantly 1 time ---- 13048586 pairs aligned 0 times concordantly or discordantly; of these: 26097172 mates make up the pairs; of these: 14350257 (54.99%) aligned 0 times 8869700 (33.99%) aligned exactly 1 time 2877215 (11.03%) aligned >1 times 88.72% overall alignment rate Time searching: 00:58:01 Overall time: 00:58:01 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 48 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 8763439 / 50406059 = 0.1739 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 19:16:08: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12178845/SRX12178845.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12178845/SRX12178845.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12178845/SRX12178845.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12178845/SRX12178845.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 19:16:08: #1 read tag files... INFO @ Tue, 02 Aug 2022 19:16:08: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 19:16:13: 1000000 INFO @ Tue, 02 Aug 2022 19:16:18: 2000000 INFO @ Tue, 02 Aug 2022 19:16:23: 3000000 INFO @ Tue, 02 Aug 2022 19:16:29: 4000000 INFO @ Tue, 02 Aug 2022 19:16:34: 5000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 19:16:37: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12178845/SRX12178845.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12178845/SRX12178845.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12178845/SRX12178845.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12178845/SRX12178845.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 19:16:37: #1 read tag files... INFO @ Tue, 02 Aug 2022 19:16:37: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 19:16:40: 6000000 INFO @ Tue, 02 Aug 2022 19:16:43: 1000000 INFO @ Tue, 02 Aug 2022 19:16:46: 7000000 INFO @ Tue, 02 Aug 2022 19:16:48: 2000000 INFO @ Tue, 02 Aug 2022 19:16:52: 8000000 INFO @ Tue, 02 Aug 2022 19:16:54: 3000000 INFO @ Tue, 02 Aug 2022 19:16:58: 9000000 INFO @ Tue, 02 Aug 2022 19:16:59: 4000000 INFO @ Tue, 02 Aug 2022 19:17:04: 10000000 INFO @ Tue, 02 Aug 2022 19:17:05: 5000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 19:17:08: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12178845/SRX12178845.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12178845/SRX12178845.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12178845/SRX12178845.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12178845/SRX12178845.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 19:17:08: #1 read tag files... INFO @ Tue, 02 Aug 2022 19:17:08: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 19:17:10: 11000000 INFO @ Tue, 02 Aug 2022 19:17:10: 6000000 INFO @ Tue, 02 Aug 2022 19:17:13: 1000000 INFO @ Tue, 02 Aug 2022 19:17:16: 12000000 INFO @ Tue, 02 Aug 2022 19:17:16: 7000000 INFO @ Tue, 02 Aug 2022 19:17:19: 2000000 INFO @ Tue, 02 Aug 2022 19:17:21: 8000000 INFO @ Tue, 02 Aug 2022 19:17:21: 13000000 INFO @ Tue, 02 Aug 2022 19:17:25: 3000000 INFO @ Tue, 02 Aug 2022 19:17:27: 9000000 INFO @ Tue, 02 Aug 2022 19:17:27: 14000000 INFO @ Tue, 02 Aug 2022 19:17:30: 4000000 INFO @ Tue, 02 Aug 2022 19:17:32: 10000000 INFO @ Tue, 02 Aug 2022 19:17:33: 15000000 INFO @ Tue, 02 Aug 2022 19:17:36: 5000000 INFO @ Tue, 02 Aug 2022 19:17:38: 16000000 INFO @ Tue, 02 Aug 2022 19:17:38: 11000000 INFO @ Tue, 02 Aug 2022 19:17:42: 6000000 INFO @ Tue, 02 Aug 2022 19:17:43: 17000000 INFO @ Tue, 02 Aug 2022 19:17:43: 12000000 INFO @ Tue, 02 Aug 2022 19:17:47: 7000000 INFO @ Tue, 02 Aug 2022 19:17:48: 18000000 INFO @ Tue, 02 Aug 2022 19:17:49: 13000000 INFO @ Tue, 02 Aug 2022 19:17:53: 8000000 INFO @ Tue, 02 Aug 2022 19:17:54: 19000000 INFO @ Tue, 02 Aug 2022 19:17:54: 14000000 INFO @ Tue, 02 Aug 2022 19:17:58: 9000000 INFO @ Tue, 02 Aug 2022 19:17:59: 20000000 INFO @ Tue, 02 Aug 2022 19:18:00: 15000000 INFO @ Tue, 02 Aug 2022 19:18:04: 10000000 INFO @ Tue, 02 Aug 2022 19:18:05: 16000000 INFO @ Tue, 02 Aug 2022 19:18:05: 21000000 INFO @ Tue, 02 Aug 2022 19:18:10: 11000000 INFO @ Tue, 02 Aug 2022 19:18:10: 17000000 INFO @ Tue, 02 Aug 2022 19:18:11: 22000000 INFO @ Tue, 02 Aug 2022 19:18:15: 12000000 INFO @ Tue, 02 Aug 2022 19:18:16: 18000000 INFO @ Tue, 02 Aug 2022 19:18:16: 23000000 INFO @ Tue, 02 Aug 2022 19:18:21: 13000000 INFO @ Tue, 02 Aug 2022 19:18:21: 19000000 INFO @ Tue, 02 Aug 2022 19:18:22: 24000000 INFO @ Tue, 02 Aug 2022 19:18:26: 14000000 INFO @ Tue, 02 Aug 2022 19:18:27: 20000000 INFO @ Tue, 02 Aug 2022 19:18:27: 25000000 INFO @ Tue, 02 Aug 2022 19:18:32: 15000000 INFO @ Tue, 02 Aug 2022 19:18:32: 21000000 INFO @ Tue, 02 Aug 2022 19:18:32: 26000000 INFO @ Tue, 02 Aug 2022 19:18:37: 27000000 INFO @ Tue, 02 Aug 2022 19:18:37: 16000000 INFO @ Tue, 02 Aug 2022 19:18:37: 22000000 INFO @ Tue, 02 Aug 2022 19:18:42: 28000000 INFO @ Tue, 02 Aug 2022 19:18:43: 23000000 INFO @ Tue, 02 Aug 2022 19:18:43: 17000000 INFO @ Tue, 02 Aug 2022 19:18:48: 29000000 INFO @ Tue, 02 Aug 2022 19:18:48: 24000000 INFO @ Tue, 02 Aug 2022 19:18:48: 18000000 INFO @ Tue, 02 Aug 2022 19:18:53: 30000000 INFO @ Tue, 02 Aug 2022 19:18:54: 25000000 INFO @ Tue, 02 Aug 2022 19:18:54: 19000000 INFO @ Tue, 02 Aug 2022 19:18:58: 31000000 INFO @ Tue, 02 Aug 2022 19:18:59: 26000000 INFO @ Tue, 02 Aug 2022 19:18:59: 20000000 INFO @ Tue, 02 Aug 2022 19:19:03: 32000000 INFO @ Tue, 02 Aug 2022 19:19:04: 27000000 INFO @ Tue, 02 Aug 2022 19:19:05: 21000000 INFO @ Tue, 02 Aug 2022 19:19:08: 33000000 INFO @ Tue, 02 Aug 2022 19:19:10: 28000000 INFO @ Tue, 02 Aug 2022 19:19:10: 22000000 INFO @ Tue, 02 Aug 2022 19:19:14: 34000000 INFO @ Tue, 02 Aug 2022 19:19:15: 29000000 INFO @ Tue, 02 Aug 2022 19:19:16: 23000000 INFO @ Tue, 02 Aug 2022 19:19:19: 35000000 INFO @ Tue, 02 Aug 2022 19:19:21: 30000000 INFO @ Tue, 02 Aug 2022 19:19:21: 24000000 INFO @ Tue, 02 Aug 2022 19:19:24: 36000000 INFO @ Tue, 02 Aug 2022 19:19:26: 31000000 INFO @ Tue, 02 Aug 2022 19:19:27: 25000000 INFO @ Tue, 02 Aug 2022 19:19:30: 37000000 INFO @ Tue, 02 Aug 2022 19:19:31: 32000000 INFO @ Tue, 02 Aug 2022 19:19:32: 26000000 INFO @ Tue, 02 Aug 2022 19:19:35: 38000000 INFO @ Tue, 02 Aug 2022 19:19:37: 33000000 INFO @ Tue, 02 Aug 2022 19:19:38: 27000000 INFO @ Tue, 02 Aug 2022 19:19:40: 39000000 INFO @ Tue, 02 Aug 2022 19:19:42: 34000000 INFO @ Tue, 02 Aug 2022 19:19:43: 28000000 INFO @ Tue, 02 Aug 2022 19:19:46: 40000000 INFO @ Tue, 02 Aug 2022 19:19:48: 35000000 INFO @ Tue, 02 Aug 2022 19:19:49: 29000000 INFO @ Tue, 02 Aug 2022 19:19:51: 41000000 INFO @ Tue, 02 Aug 2022 19:19:53: 36000000 INFO @ Tue, 02 Aug 2022 19:19:54: 30000000 INFO @ Tue, 02 Aug 2022 19:19:56: 42000000 INFO @ Tue, 02 Aug 2022 19:19:58: 37000000 INFO @ Tue, 02 Aug 2022 19:20:00: 31000000 INFO @ Tue, 02 Aug 2022 19:20:01: 43000000 INFO @ Tue, 02 Aug 2022 19:20:04: 38000000 INFO @ Tue, 02 Aug 2022 19:20:05: 32000000 INFO @ Tue, 02 Aug 2022 19:20:06: 44000000 INFO @ Tue, 02 Aug 2022 19:20:09: 39000000 INFO @ Tue, 02 Aug 2022 19:20:11: 33000000 INFO @ Tue, 02 Aug 2022 19:20:12: 45000000 INFO @ Tue, 02 Aug 2022 19:20:15: 40000000 INFO @ Tue, 02 Aug 2022 19:20:16: 34000000 INFO @ Tue, 02 Aug 2022 19:20:17: 46000000 INFO @ Tue, 02 Aug 2022 19:20:20: 41000000 INFO @ Tue, 02 Aug 2022 19:20:22: 35000000 INFO @ Tue, 02 Aug 2022 19:20:22: 47000000 INFO @ Tue, 02 Aug 2022 19:20:26: 42000000 INFO @ Tue, 02 Aug 2022 19:20:27: 48000000 INFO @ Tue, 02 Aug 2022 19:20:27: 36000000 INFO @ Tue, 02 Aug 2022 19:20:31: 43000000 INFO @ Tue, 02 Aug 2022 19:20:32: 49000000 INFO @ Tue, 02 Aug 2022 19:20:33: 37000000 INFO @ Tue, 02 Aug 2022 19:20:37: 44000000 INFO @ Tue, 02 Aug 2022 19:20:37: 50000000 INFO @ Tue, 02 Aug 2022 19:20:38: 38000000 INFO @ Tue, 02 Aug 2022 19:20:42: 45000000 INFO @ Tue, 02 Aug 2022 19:20:43: 51000000 INFO @ Tue, 02 Aug 2022 19:20:44: 39000000 INFO @ Tue, 02 Aug 2022 19:20:48: 46000000 INFO @ Tue, 02 Aug 2022 19:20:48: 52000000 INFO @ Tue, 02 Aug 2022 19:20:50: 40000000 INFO @ Tue, 02 Aug 2022 19:20:53: 53000000 INFO @ Tue, 02 Aug 2022 19:20:53: 47000000 INFO @ Tue, 02 Aug 2022 19:20:55: 41000000 INFO @ Tue, 02 Aug 2022 19:20:58: 54000000 INFO @ Tue, 02 Aug 2022 19:20:58: 48000000 INFO @ Tue, 02 Aug 2022 19:21:01: 42000000 INFO @ Tue, 02 Aug 2022 19:21:03: 55000000 INFO @ Tue, 02 Aug 2022 19:21:04: 49000000 INFO @ Tue, 02 Aug 2022 19:21:06: 43000000 INFO @ Tue, 02 Aug 2022 19:21:08: 56000000 INFO @ Tue, 02 Aug 2022 19:21:09: 50000000 INFO @ Tue, 02 Aug 2022 19:21:12: 44000000 INFO @ Tue, 02 Aug 2022 19:21:14: 57000000 INFO @ Tue, 02 Aug 2022 19:21:15: 51000000 INFO @ Tue, 02 Aug 2022 19:21:17: 45000000 INFO @ Tue, 02 Aug 2022 19:21:19: 58000000 INFO @ Tue, 02 Aug 2022 19:21:20: 52000000 INFO @ Tue, 02 Aug 2022 19:21:23: 46000000 INFO @ Tue, 02 Aug 2022 19:21:24: 59000000 INFO @ Tue, 02 Aug 2022 19:21:25: 53000000 INFO @ Tue, 02 Aug 2022 19:21:28: 47000000 INFO @ Tue, 02 Aug 2022 19:21:29: 60000000 INFO @ Tue, 02 Aug 2022 19:21:31: 54000000 INFO @ Tue, 02 Aug 2022 19:21:34: 48000000 INFO @ Tue, 02 Aug 2022 19:21:34: 61000000 INFO @ Tue, 02 Aug 2022 19:21:36: 55000000 INFO @ Tue, 02 Aug 2022 19:21:39: 49000000 INFO @ Tue, 02 Aug 2022 19:21:39: 62000000 INFO @ Tue, 02 Aug 2022 19:21:42: 56000000 INFO @ Tue, 02 Aug 2022 19:21:44: 63000000 INFO @ Tue, 02 Aug 2022 19:21:45: 50000000 INFO @ Tue, 02 Aug 2022 19:21:47: 57000000 INFO @ Tue, 02 Aug 2022 19:21:50: 64000000 INFO @ Tue, 02 Aug 2022 19:21:50: 51000000 INFO @ Tue, 02 Aug 2022 19:21:52: 58000000 INFO @ Tue, 02 Aug 2022 19:21:55: 65000000 INFO @ Tue, 02 Aug 2022 19:21:56: 52000000 INFO @ Tue, 02 Aug 2022 19:21:58: 59000000 INFO @ Tue, 02 Aug 2022 19:22:00: 66000000 INFO @ Tue, 02 Aug 2022 19:22:01: 53000000 INFO @ Tue, 02 Aug 2022 19:22:03: 60000000 INFO @ Tue, 02 Aug 2022 19:22:05: 67000000 INFO @ Tue, 02 Aug 2022 19:22:07: 54000000 INFO @ Tue, 02 Aug 2022 19:22:09: 61000000 INFO @ Tue, 02 Aug 2022 19:22:10: 68000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 02 Aug 2022 19:22:12: 55000000 INFO @ Tue, 02 Aug 2022 19:22:14: 62000000 INFO @ Tue, 02 Aug 2022 19:22:16: 69000000 INFO @ Tue, 02 Aug 2022 19:22:17: 56000000 INFO @ Tue, 02 Aug 2022 19:22:19: 63000000 INFO @ Tue, 02 Aug 2022 19:22:21: 70000000 INFO @ Tue, 02 Aug 2022 19:22:23: 57000000 INFO @ Tue, 02 Aug 2022 19:22:25: 64000000 INFO @ Tue, 02 Aug 2022 19:22:26: 71000000 INFO @ Tue, 02 Aug 2022 19:22:28: 58000000 INFO @ Tue, 02 Aug 2022 19:22:30: 65000000 INFO @ Tue, 02 Aug 2022 19:22:31: 72000000 INFO @ Tue, 02 Aug 2022 19:22:34: 59000000 INFO @ Tue, 02 Aug 2022 19:22:36: 66000000 INFO @ Tue, 02 Aug 2022 19:22:36: 73000000 INFO @ Tue, 02 Aug 2022 19:22:39: 60000000 INFO @ Tue, 02 Aug 2022 19:22:41: 67000000 INFO @ Tue, 02 Aug 2022 19:22:41: 74000000 INFO @ Tue, 02 Aug 2022 19:22:45: 61000000 INFO @ Tue, 02 Aug 2022 19:22:46: 68000000 INFO @ Tue, 02 Aug 2022 19:22:47: 75000000 INFO @ Tue, 02 Aug 2022 19:22:50: 62000000 INFO @ Tue, 02 Aug 2022 19:22:52: 76000000 INFO @ Tue, 02 Aug 2022 19:22:52: 69000000 INFO @ Tue, 02 Aug 2022 19:22:56: 63000000 INFO @ Tue, 02 Aug 2022 19:22:57: 77000000 INFO @ Tue, 02 Aug 2022 19:22:57: 70000000 INFO @ Tue, 02 Aug 2022 19:23:01: 64000000 INFO @ Tue, 02 Aug 2022 19:23:02: 78000000 INFO @ Tue, 02 Aug 2022 19:23:02: 71000000 INFO @ Tue, 02 Aug 2022 19:23:07: 65000000 INFO @ Tue, 02 Aug 2022 19:23:07: 79000000 INFO @ Tue, 02 Aug 2022 19:23:08: 72000000 INFO @ Tue, 02 Aug 2022 19:23:12: 66000000 INFO @ Tue, 02 Aug 2022 19:23:13: 80000000 INFO @ Tue, 02 Aug 2022 19:23:13: 73000000 INFO @ Tue, 02 Aug 2022 19:23:17: 67000000 INFO @ Tue, 02 Aug 2022 19:23:18: 81000000 INFO @ Tue, 02 Aug 2022 19:23:19: 74000000 INFO @ Tue, 02 Aug 2022 19:23:23: 68000000 INFO @ Tue, 02 Aug 2022 19:23:23: 82000000 INFO @ Tue, 02 Aug 2022 19:23:24: 75000000 INFO @ Tue, 02 Aug 2022 19:23:28: 83000000 INFO @ Tue, 02 Aug 2022 19:23:28: 69000000 INFO @ Tue, 02 Aug 2022 19:23:29: 76000000 INFO @ Tue, 02 Aug 2022 19:23:34: 84000000 INFO @ Tue, 02 Aug 2022 19:23:34: 70000000 INFO @ Tue, 02 Aug 2022 19:23:35: 77000000 BigWig に変換しました。 INFO @ Tue, 02 Aug 2022 19:23:39: 85000000 INFO @ Tue, 02 Aug 2022 19:23:39: 71000000 INFO @ Tue, 02 Aug 2022 19:23:40: 78000000 INFO @ Tue, 02 Aug 2022 19:23:44: 86000000 INFO @ Tue, 02 Aug 2022 19:23:45: 72000000 INFO @ Tue, 02 Aug 2022 19:23:46: 79000000 INFO @ Tue, 02 Aug 2022 19:23:49: 87000000 INFO @ Tue, 02 Aug 2022 19:23:50: 73000000 INFO @ Tue, 02 Aug 2022 19:23:51: 80000000 INFO @ Tue, 02 Aug 2022 19:23:54: 88000000 INFO @ Tue, 02 Aug 2022 19:23:56: 74000000 INFO @ Tue, 02 Aug 2022 19:23:57: 81000000 INFO @ Tue, 02 Aug 2022 19:24:00: 89000000 INFO @ Tue, 02 Aug 2022 19:24:01: 75000000 INFO @ Tue, 02 Aug 2022 19:24:02: 82000000 INFO @ Tue, 02 Aug 2022 19:24:05: 90000000 INFO @ Tue, 02 Aug 2022 19:24:07: 76000000 INFO @ Tue, 02 Aug 2022 19:24:08: 83000000 INFO @ Tue, 02 Aug 2022 19:24:10: 91000000 INFO @ Tue, 02 Aug 2022 19:24:12: 77000000 INFO @ Tue, 02 Aug 2022 19:24:13: 84000000 INFO @ Tue, 02 Aug 2022 19:24:16: 92000000 INFO @ Tue, 02 Aug 2022 19:24:18: 78000000 INFO @ Tue, 02 Aug 2022 19:24:19: 85000000 INFO @ Tue, 02 Aug 2022 19:24:21: 93000000 INFO @ Tue, 02 Aug 2022 19:24:23: 79000000 INFO @ Tue, 02 Aug 2022 19:24:24: 86000000 INFO @ Tue, 02 Aug 2022 19:24:26: 94000000 INFO @ Tue, 02 Aug 2022 19:24:29: 80000000 INFO @ Tue, 02 Aug 2022 19:24:29: 87000000 INFO @ Tue, 02 Aug 2022 19:24:31: 95000000 INFO @ Tue, 02 Aug 2022 19:24:33: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 19:24:33: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 19:24:33: #1 total tags in treatment: 33009637 INFO @ Tue, 02 Aug 2022 19:24:33: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 19:24:33: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 19:24:34: #1 tags after filtering in treatment: 19546850 INFO @ Tue, 02 Aug 2022 19:24:34: #1 Redundant rate of treatment: 0.41 INFO @ Tue, 02 Aug 2022 19:24:34: #1 finished! INFO @ Tue, 02 Aug 2022 19:24:34: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 19:24:34: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 19:24:34: 81000000 INFO @ Tue, 02 Aug 2022 19:24:35: 88000000 INFO @ Tue, 02 Aug 2022 19:24:35: #2 number of paired peaks: 470 WARNING @ Tue, 02 Aug 2022 19:24:35: Fewer paired peaks (470) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 470 pairs to build model! INFO @ Tue, 02 Aug 2022 19:24:35: start model_add_line... INFO @ Tue, 02 Aug 2022 19:24:36: start X-correlation... INFO @ Tue, 02 Aug 2022 19:24:36: end of X-cor INFO @ Tue, 02 Aug 2022 19:24:36: #2 finished! INFO @ Tue, 02 Aug 2022 19:24:36: #2 predicted fragment length is 51 bps INFO @ Tue, 02 Aug 2022 19:24:36: #2 alternative fragment length(s) may be 4,51 bps INFO @ Tue, 02 Aug 2022 19:24:36: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12178845/SRX12178845.05_model.r WARNING @ Tue, 02 Aug 2022 19:24:36: #2 Since the d (51) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 19:24:36: #2 You may need to consider one of the other alternative d(s): 4,51 WARNING @ Tue, 02 Aug 2022 19:24:36: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 19:24:36: #3 Call peaks... INFO @ Tue, 02 Aug 2022 19:24:36: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 19:24:40: 82000000 INFO @ Tue, 02 Aug 2022 19:24:40: 89000000 INFO @ Tue, 02 Aug 2022 19:24:45: 83000000 INFO @ Tue, 02 Aug 2022 19:24:46: 90000000 INFO @ Tue, 02 Aug 2022 19:24:51: 84000000 INFO @ Tue, 02 Aug 2022 19:24:51: 91000000 INFO @ Tue, 02 Aug 2022 19:24:56: 85000000 INFO @ Tue, 02 Aug 2022 19:24:57: 92000000 INFO @ Tue, 02 Aug 2022 19:25:02: 86000000 INFO @ Tue, 02 Aug 2022 19:25:02: 93000000 INFO @ Tue, 02 Aug 2022 19:25:07: 87000000 INFO @ Tue, 02 Aug 2022 19:25:08: 94000000 INFO @ Tue, 02 Aug 2022 19:25:11: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 19:25:13: 88000000 INFO @ Tue, 02 Aug 2022 19:25:13: 95000000 INFO @ Tue, 02 Aug 2022 19:25:15: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 19:25:15: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 19:25:15: #1 total tags in treatment: 33009637 INFO @ Tue, 02 Aug 2022 19:25:15: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 19:25:15: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 19:25:16: #1 tags after filtering in treatment: 19546850 INFO @ Tue, 02 Aug 2022 19:25:16: #1 Redundant rate of treatment: 0.41 INFO @ Tue, 02 Aug 2022 19:25:16: #1 finished! INFO @ Tue, 02 Aug 2022 19:25:16: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 19:25:16: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 19:25:17: #2 number of paired peaks: 470 WARNING @ Tue, 02 Aug 2022 19:25:17: Fewer paired peaks (470) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 470 pairs to build model! INFO @ Tue, 02 Aug 2022 19:25:17: start model_add_line... INFO @ Tue, 02 Aug 2022 19:25:17: start X-correlation... INFO @ Tue, 02 Aug 2022 19:25:17: end of X-cor INFO @ Tue, 02 Aug 2022 19:25:17: #2 finished! INFO @ Tue, 02 Aug 2022 19:25:17: #2 predicted fragment length is 51 bps INFO @ Tue, 02 Aug 2022 19:25:17: #2 alternative fragment length(s) may be 4,51 bps INFO @ Tue, 02 Aug 2022 19:25:17: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12178845/SRX12178845.10_model.r WARNING @ Tue, 02 Aug 2022 19:25:17: #2 Since the d (51) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 19:25:17: #2 You may need to consider one of the other alternative d(s): 4,51 WARNING @ Tue, 02 Aug 2022 19:25:17: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 19:25:17: #3 Call peaks... INFO @ Tue, 02 Aug 2022 19:25:17: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 19:25:18: 89000000 INFO @ Tue, 02 Aug 2022 19:25:23: 90000000 INFO @ Tue, 02 Aug 2022 19:25:28: 91000000 INFO @ Tue, 02 Aug 2022 19:25:30: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12178845/SRX12178845.05_peaks.xls INFO @ Tue, 02 Aug 2022 19:25:31: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12178845/SRX12178845.05_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 19:25:31: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12178845/SRX12178845.05_summits.bed INFO @ Tue, 02 Aug 2022 19:25:31: Done! pass1 - making usageList (15 chroms): 3 millis pass2 - checking and writing primary data (21573 records, 4 fields): 19 millis CompletedMACS2peakCalling INFO @ Tue, 02 Aug 2022 19:25:34: 92000000 INFO @ Tue, 02 Aug 2022 19:25:39: 93000000 INFO @ Tue, 02 Aug 2022 19:25:44: 94000000 INFO @ Tue, 02 Aug 2022 19:25:49: 95000000 INFO @ Tue, 02 Aug 2022 19:25:51: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 19:25:51: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 19:25:51: #1 total tags in treatment: 33009637 INFO @ Tue, 02 Aug 2022 19:25:51: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 19:25:51: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 19:25:52: #1 tags after filtering in treatment: 19546850 INFO @ Tue, 02 Aug 2022 19:25:52: #1 Redundant rate of treatment: 0.41 INFO @ Tue, 02 Aug 2022 19:25:52: #1 finished! INFO @ Tue, 02 Aug 2022 19:25:52: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 19:25:52: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 19:25:52: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 19:25:53: #2 number of paired peaks: 470 WARNING @ Tue, 02 Aug 2022 19:25:53: Fewer paired peaks (470) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 470 pairs to build model! INFO @ Tue, 02 Aug 2022 19:25:53: start model_add_line... INFO @ Tue, 02 Aug 2022 19:25:54: start X-correlation... INFO @ Tue, 02 Aug 2022 19:25:54: end of X-cor INFO @ Tue, 02 Aug 2022 19:25:54: #2 finished! INFO @ Tue, 02 Aug 2022 19:25:54: #2 predicted fragment length is 51 bps INFO @ Tue, 02 Aug 2022 19:25:54: #2 alternative fragment length(s) may be 4,51 bps INFO @ Tue, 02 Aug 2022 19:25:54: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12178845/SRX12178845.20_model.r WARNING @ Tue, 02 Aug 2022 19:25:54: #2 Since the d (51) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 19:25:54: #2 You may need to consider one of the other alternative d(s): 4,51 WARNING @ Tue, 02 Aug 2022 19:25:54: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 19:25:54: #3 Call peaks... INFO @ Tue, 02 Aug 2022 19:25:54: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 19:26:11: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12178845/SRX12178845.10_peaks.xls INFO @ Tue, 02 Aug 2022 19:26:11: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12178845/SRX12178845.10_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 19:26:11: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12178845/SRX12178845.10_summits.bed INFO @ Tue, 02 Aug 2022 19:26:11: Done! pass1 - making usageList (15 chroms): 2 millis pass2 - checking and writing primary data (8680 records, 4 fields): 9 millis CompletedMACS2peakCalling INFO @ Tue, 02 Aug 2022 19:26:27: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 19:26:44: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12178845/SRX12178845.20_peaks.xls INFO @ Tue, 02 Aug 2022 19:26:44: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12178845/SRX12178845.20_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 19:26:44: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12178845/SRX12178845.20_summits.bed INFO @ Tue, 02 Aug 2022 19:26:44: Done! pass1 - making usageList (10 chroms): 0 millis pass2 - checking and writing primary data (467 records, 4 fields): 2 millis CompletedMACS2peakCalling