Job ID = 16440168 SRX = SRX12178838 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2022-08-02T08:25:25 prefetch.2.10.7: 1) Downloading 'SRR15888076'... 2022-08-02T08:25:25 prefetch.2.10.7: Downloading via HTTPS... 2022-08-02T08:27:34 prefetch.2.10.7: HTTPS download succeed 2022-08-02T08:27:34 prefetch.2.10.7: 1) 'SRR15888076' was downloaded successfully 2022-08-02T08:27:34 prefetch.2.10.7: 'SRR15888076' has 0 unresolved dependencies Read 46654740 spots for SRR15888076/SRR15888076.sra Written 46654740 spots for SRR15888076/SRR15888076.sra fastq に変換しました。 bowtie でマッピング中... Your job 16441112 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:01 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:03:01 46654740 reads; of these: 46654740 (100.00%) were paired; of these: 13961567 (29.93%) aligned concordantly 0 times 28829535 (61.79%) aligned concordantly exactly 1 time 3863638 (8.28%) aligned concordantly >1 times ---- 13961567 pairs aligned concordantly 0 times; of these: 6239725 (44.69%) aligned discordantly 1 time ---- 7721842 pairs aligned 0 times concordantly or discordantly; of these: 15443684 mates make up the pairs; of these: 8806059 (57.02%) aligned 0 times 4804415 (31.11%) aligned exactly 1 time 1833210 (11.87%) aligned >1 times 90.56% overall alignment rate Time searching: 01:03:02 Overall time: 01:03:02 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 36 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 5471590 / 38794996 = 0.1410 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 19:00:12: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12178838/SRX12178838.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12178838/SRX12178838.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12178838/SRX12178838.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12178838/SRX12178838.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 19:00:12: #1 read tag files... INFO @ Tue, 02 Aug 2022 19:00:12: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 19:00:18: 1000000 INFO @ Tue, 02 Aug 2022 19:00:24: 2000000 INFO @ Tue, 02 Aug 2022 19:00:30: 3000000 INFO @ Tue, 02 Aug 2022 19:00:35: 4000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 19:00:41: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12178838/SRX12178838.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12178838/SRX12178838.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12178838/SRX12178838.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12178838/SRX12178838.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 19:00:41: #1 read tag files... INFO @ Tue, 02 Aug 2022 19:00:41: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 19:00:42: 5000000 INFO @ Tue, 02 Aug 2022 19:00:48: 1000000 INFO @ Tue, 02 Aug 2022 19:00:48: 6000000 INFO @ Tue, 02 Aug 2022 19:00:54: 2000000 INFO @ Tue, 02 Aug 2022 19:00:55: 7000000 INFO @ Tue, 02 Aug 2022 19:01:01: 3000000 INFO @ Tue, 02 Aug 2022 19:01:02: 8000000 INFO @ Tue, 02 Aug 2022 19:01:07: 4000000 INFO @ Tue, 02 Aug 2022 19:01:08: 9000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 19:01:11: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12178838/SRX12178838.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12178838/SRX12178838.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12178838/SRX12178838.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12178838/SRX12178838.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 19:01:11: #1 read tag files... INFO @ Tue, 02 Aug 2022 19:01:11: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 19:01:14: 5000000 INFO @ Tue, 02 Aug 2022 19:01:15: 10000000 INFO @ Tue, 02 Aug 2022 19:01:17: 1000000 INFO @ Tue, 02 Aug 2022 19:01:20: 6000000 INFO @ Tue, 02 Aug 2022 19:01:22: 11000000 INFO @ Tue, 02 Aug 2022 19:01:23: 2000000 INFO @ Tue, 02 Aug 2022 19:01:27: 7000000 INFO @ Tue, 02 Aug 2022 19:01:29: 12000000 INFO @ Tue, 02 Aug 2022 19:01:29: 3000000 INFO @ Tue, 02 Aug 2022 19:01:34: 8000000 INFO @ Tue, 02 Aug 2022 19:01:36: 4000000 INFO @ Tue, 02 Aug 2022 19:01:36: 13000000 INFO @ Tue, 02 Aug 2022 19:01:40: 9000000 INFO @ Tue, 02 Aug 2022 19:01:42: 5000000 INFO @ Tue, 02 Aug 2022 19:01:43: 14000000 INFO @ Tue, 02 Aug 2022 19:01:47: 10000000 INFO @ Tue, 02 Aug 2022 19:01:48: 6000000 INFO @ Tue, 02 Aug 2022 19:01:50: 15000000 INFO @ Tue, 02 Aug 2022 19:01:53: 11000000 INFO @ Tue, 02 Aug 2022 19:01:54: 7000000 INFO @ Tue, 02 Aug 2022 19:01:56: 16000000 INFO @ Tue, 02 Aug 2022 19:02:00: 12000000 INFO @ Tue, 02 Aug 2022 19:02:01: 8000000 INFO @ Tue, 02 Aug 2022 19:02:03: 17000000 INFO @ Tue, 02 Aug 2022 19:02:07: 13000000 INFO @ Tue, 02 Aug 2022 19:02:07: 9000000 INFO @ Tue, 02 Aug 2022 19:02:10: 18000000 INFO @ Tue, 02 Aug 2022 19:02:13: 14000000 INFO @ Tue, 02 Aug 2022 19:02:13: 10000000 INFO @ Tue, 02 Aug 2022 19:02:17: 19000000 INFO @ Tue, 02 Aug 2022 19:02:20: 15000000 INFO @ Tue, 02 Aug 2022 19:02:20: 11000000 INFO @ Tue, 02 Aug 2022 19:02:24: 20000000 INFO @ Tue, 02 Aug 2022 19:02:27: 16000000 INFO @ Tue, 02 Aug 2022 19:02:27: 12000000 INFO @ Tue, 02 Aug 2022 19:02:30: 21000000 INFO @ Tue, 02 Aug 2022 19:02:33: 13000000 INFO @ Tue, 02 Aug 2022 19:02:33: 17000000 INFO @ Tue, 02 Aug 2022 19:02:37: 22000000 INFO @ Tue, 02 Aug 2022 19:02:39: 14000000 INFO @ Tue, 02 Aug 2022 19:02:40: 18000000 INFO @ Tue, 02 Aug 2022 19:02:44: 23000000 INFO @ Tue, 02 Aug 2022 19:02:46: 15000000 INFO @ Tue, 02 Aug 2022 19:02:47: 19000000 INFO @ Tue, 02 Aug 2022 19:02:50: 24000000 INFO @ Tue, 02 Aug 2022 19:02:53: 16000000 INFO @ Tue, 02 Aug 2022 19:02:53: 20000000 INFO @ Tue, 02 Aug 2022 19:02:57: 25000000 INFO @ Tue, 02 Aug 2022 19:02:59: 17000000 INFO @ Tue, 02 Aug 2022 19:03:00: 21000000 INFO @ Tue, 02 Aug 2022 19:03:04: 26000000 INFO @ Tue, 02 Aug 2022 19:03:05: 18000000 INFO @ Tue, 02 Aug 2022 19:03:07: 22000000 INFO @ Tue, 02 Aug 2022 19:03:10: 27000000 INFO @ Tue, 02 Aug 2022 19:03:12: 19000000 INFO @ Tue, 02 Aug 2022 19:03:14: 23000000 INFO @ Tue, 02 Aug 2022 19:03:17: 28000000 INFO @ Tue, 02 Aug 2022 19:03:19: 20000000 INFO @ Tue, 02 Aug 2022 19:03:20: 24000000 INFO @ Tue, 02 Aug 2022 19:03:23: 29000000 INFO @ Tue, 02 Aug 2022 19:03:25: 21000000 INFO @ Tue, 02 Aug 2022 19:03:27: 25000000 INFO @ Tue, 02 Aug 2022 19:03:30: 30000000 INFO @ Tue, 02 Aug 2022 19:03:31: 22000000 INFO @ Tue, 02 Aug 2022 19:03:34: 26000000 INFO @ Tue, 02 Aug 2022 19:03:36: 31000000 INFO @ Tue, 02 Aug 2022 19:03:38: 23000000 INFO @ Tue, 02 Aug 2022 19:03:40: 27000000 INFO @ Tue, 02 Aug 2022 19:03:43: 32000000 INFO @ Tue, 02 Aug 2022 19:03:44: 24000000 INFO @ Tue, 02 Aug 2022 19:03:47: 28000000 INFO @ Tue, 02 Aug 2022 19:03:49: 33000000 INFO @ Tue, 02 Aug 2022 19:03:50: 25000000 INFO @ Tue, 02 Aug 2022 19:03:54: 29000000 INFO @ Tue, 02 Aug 2022 19:03:56: 34000000 INFO @ Tue, 02 Aug 2022 19:03:57: 26000000 INFO @ Tue, 02 Aug 2022 19:04:00: 30000000 INFO @ Tue, 02 Aug 2022 19:04:02: 35000000 INFO @ Tue, 02 Aug 2022 19:04:03: 27000000 INFO @ Tue, 02 Aug 2022 19:04:07: 31000000 INFO @ Tue, 02 Aug 2022 19:04:09: 36000000 INFO @ Tue, 02 Aug 2022 19:04:10: 28000000 INFO @ Tue, 02 Aug 2022 19:04:13: 32000000 INFO @ Tue, 02 Aug 2022 19:04:15: 37000000 INFO @ Tue, 02 Aug 2022 19:04:16: 29000000 INFO @ Tue, 02 Aug 2022 19:04:20: 33000000 INFO @ Tue, 02 Aug 2022 19:04:22: 38000000 INFO @ Tue, 02 Aug 2022 19:04:22: 30000000 INFO @ Tue, 02 Aug 2022 19:04:27: 34000000 INFO @ Tue, 02 Aug 2022 19:04:28: 39000000 INFO @ Tue, 02 Aug 2022 19:04:29: 31000000 INFO @ Tue, 02 Aug 2022 19:04:33: 35000000 INFO @ Tue, 02 Aug 2022 19:04:35: 40000000 INFO @ Tue, 02 Aug 2022 19:04:35: 32000000 INFO @ Tue, 02 Aug 2022 19:04:40: 36000000 INFO @ Tue, 02 Aug 2022 19:04:41: 41000000 INFO @ Tue, 02 Aug 2022 19:04:41: 33000000 INFO @ Tue, 02 Aug 2022 19:04:46: 37000000 INFO @ Tue, 02 Aug 2022 19:04:48: 42000000 INFO @ Tue, 02 Aug 2022 19:04:48: 34000000 INFO @ Tue, 02 Aug 2022 19:04:53: 38000000 INFO @ Tue, 02 Aug 2022 19:04:54: 35000000 INFO @ Tue, 02 Aug 2022 19:04:54: 43000000 INFO @ Tue, 02 Aug 2022 19:05:00: 39000000 INFO @ Tue, 02 Aug 2022 19:05:01: 44000000 INFO @ Tue, 02 Aug 2022 19:05:01: 36000000 INFO @ Tue, 02 Aug 2022 19:05:07: 40000000 INFO @ Tue, 02 Aug 2022 19:05:07: 37000000 INFO @ Tue, 02 Aug 2022 19:05:07: 45000000 INFO @ Tue, 02 Aug 2022 19:05:13: 41000000 INFO @ Tue, 02 Aug 2022 19:05:13: 38000000 INFO @ Tue, 02 Aug 2022 19:05:14: 46000000 INFO @ Tue, 02 Aug 2022 19:05:20: 39000000 INFO @ Tue, 02 Aug 2022 19:05:20: 42000000 INFO @ Tue, 02 Aug 2022 19:05:21: 47000000 INFO @ Tue, 02 Aug 2022 19:05:26: 40000000 INFO @ Tue, 02 Aug 2022 19:05:26: 43000000 INFO @ Tue, 02 Aug 2022 19:05:27: 48000000 INFO @ Tue, 02 Aug 2022 19:05:32: 41000000 INFO @ Tue, 02 Aug 2022 19:05:33: 44000000 INFO @ Tue, 02 Aug 2022 19:05:34: 49000000 INFO @ Tue, 02 Aug 2022 19:05:39: 42000000 INFO @ Tue, 02 Aug 2022 19:05:39: 45000000 INFO @ Tue, 02 Aug 2022 19:05:40: 50000000 INFO @ Tue, 02 Aug 2022 19:05:45: 43000000 INFO @ Tue, 02 Aug 2022 19:05:46: 46000000 INFO @ Tue, 02 Aug 2022 19:05:46: 51000000 INFO @ Tue, 02 Aug 2022 19:05:51: 44000000 INFO @ Tue, 02 Aug 2022 19:05:53: 47000000 INFO @ Tue, 02 Aug 2022 19:05:53: 52000000 INFO @ Tue, 02 Aug 2022 19:05:58: 45000000 INFO @ Tue, 02 Aug 2022 19:05:59: 48000000 INFO @ Tue, 02 Aug 2022 19:05:59: 53000000 INFO @ Tue, 02 Aug 2022 19:06:04: 46000000 INFO @ Tue, 02 Aug 2022 19:06:05: 49000000 INFO @ Tue, 02 Aug 2022 19:06:06: 54000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 02 Aug 2022 19:06:10: 47000000 INFO @ Tue, 02 Aug 2022 19:06:12: 50000000 INFO @ Tue, 02 Aug 2022 19:06:13: 55000000 INFO @ Tue, 02 Aug 2022 19:06:17: 48000000 INFO @ Tue, 02 Aug 2022 19:06:19: 51000000 INFO @ Tue, 02 Aug 2022 19:06:20: 56000000 INFO @ Tue, 02 Aug 2022 19:06:22: 49000000 INFO @ Tue, 02 Aug 2022 19:06:26: 52000000 INFO @ Tue, 02 Aug 2022 19:06:27: 57000000 INFO @ Tue, 02 Aug 2022 19:06:28: 50000000 INFO @ Tue, 02 Aug 2022 19:06:33: 53000000 INFO @ Tue, 02 Aug 2022 19:06:34: 58000000 INFO @ Tue, 02 Aug 2022 19:06:34: 51000000 INFO @ Tue, 02 Aug 2022 19:06:39: 54000000 INFO @ Tue, 02 Aug 2022 19:06:40: 52000000 INFO @ Tue, 02 Aug 2022 19:06:41: 59000000 INFO @ Tue, 02 Aug 2022 19:06:46: 55000000 INFO @ Tue, 02 Aug 2022 19:06:48: 60000000 INFO @ Tue, 02 Aug 2022 19:06:50: 53000000 INFO @ Tue, 02 Aug 2022 19:06:53: 56000000 INFO @ Tue, 02 Aug 2022 19:06:55: 61000000 INFO @ Tue, 02 Aug 2022 19:06:57: 54000000 INFO @ Tue, 02 Aug 2022 19:07:00: 57000000 INFO @ Tue, 02 Aug 2022 19:07:03: 62000000 INFO @ Tue, 02 Aug 2022 19:07:03: 55000000 INFO @ Tue, 02 Aug 2022 19:07:07: 58000000 INFO @ Tue, 02 Aug 2022 19:07:09: 63000000 INFO @ Tue, 02 Aug 2022 19:07:10: 56000000 INFO @ Tue, 02 Aug 2022 19:07:13: 59000000 INFO @ Tue, 02 Aug 2022 19:07:16: 57000000 INFO @ Tue, 02 Aug 2022 19:07:16: 64000000 INFO @ Tue, 02 Aug 2022 19:07:20: 60000000 INFO @ Tue, 02 Aug 2022 19:07:22: 58000000 INFO @ Tue, 02 Aug 2022 19:07:23: 65000000 INFO @ Tue, 02 Aug 2022 19:07:26: 61000000 INFO @ Tue, 02 Aug 2022 19:07:29: 59000000 INFO @ Tue, 02 Aug 2022 19:07:29: 66000000 INFO @ Tue, 02 Aug 2022 19:07:33: 62000000 INFO @ Tue, 02 Aug 2022 19:07:35: 60000000 INFO @ Tue, 02 Aug 2022 19:07:36: 67000000 INFO @ Tue, 02 Aug 2022 19:07:40: 63000000 INFO @ Tue, 02 Aug 2022 19:07:41: 61000000 INFO @ Tue, 02 Aug 2022 19:07:43: 68000000 BigWig に変換しました。 INFO @ Tue, 02 Aug 2022 19:07:47: 64000000 INFO @ Tue, 02 Aug 2022 19:07:48: 62000000 INFO @ Tue, 02 Aug 2022 19:07:50: 69000000 INFO @ Tue, 02 Aug 2022 19:07:53: 65000000 INFO @ Tue, 02 Aug 2022 19:07:54: 63000000 INFO @ Tue, 02 Aug 2022 19:07:56: 70000000 INFO @ Tue, 02 Aug 2022 19:08:00: 66000000 INFO @ Tue, 02 Aug 2022 19:08:01: 64000000 INFO @ Tue, 02 Aug 2022 19:08:03: 71000000 INFO @ Tue, 02 Aug 2022 19:08:06: 67000000 INFO @ Tue, 02 Aug 2022 19:08:08: 65000000 INFO @ Tue, 02 Aug 2022 19:08:10: 72000000 INFO @ Tue, 02 Aug 2022 19:08:13: 68000000 INFO @ Tue, 02 Aug 2022 19:08:14: 66000000 INFO @ Tue, 02 Aug 2022 19:08:18: 73000000 INFO @ Tue, 02 Aug 2022 19:08:20: 69000000 INFO @ Tue, 02 Aug 2022 19:08:21: 67000000 INFO @ Tue, 02 Aug 2022 19:08:22: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 19:08:22: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 19:08:22: #1 total tags in treatment: 27770008 INFO @ Tue, 02 Aug 2022 19:08:22: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 19:08:22: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 19:08:23: #1 tags after filtering in treatment: 16666299 INFO @ Tue, 02 Aug 2022 19:08:23: #1 Redundant rate of treatment: 0.40 INFO @ Tue, 02 Aug 2022 19:08:23: #1 finished! INFO @ Tue, 02 Aug 2022 19:08:23: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 19:08:23: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 19:08:24: #2 number of paired peaks: 1249 INFO @ Tue, 02 Aug 2022 19:08:24: start model_add_line... INFO @ Tue, 02 Aug 2022 19:08:24: start X-correlation... INFO @ Tue, 02 Aug 2022 19:08:24: end of X-cor INFO @ Tue, 02 Aug 2022 19:08:24: #2 finished! INFO @ Tue, 02 Aug 2022 19:08:24: #2 predicted fragment length is 75 bps INFO @ Tue, 02 Aug 2022 19:08:24: #2 alternative fragment length(s) may be 4,75 bps INFO @ Tue, 02 Aug 2022 19:08:24: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12178838/SRX12178838.05_model.r WARNING @ Tue, 02 Aug 2022 19:08:24: #2 Since the d (75) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 19:08:24: #2 You may need to consider one of the other alternative d(s): 4,75 WARNING @ Tue, 02 Aug 2022 19:08:24: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 19:08:24: #3 Call peaks... INFO @ Tue, 02 Aug 2022 19:08:24: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 19:08:26: 70000000 INFO @ Tue, 02 Aug 2022 19:08:27: 68000000 INFO @ Tue, 02 Aug 2022 19:08:33: 71000000 INFO @ Tue, 02 Aug 2022 19:08:34: 69000000 INFO @ Tue, 02 Aug 2022 19:08:39: 72000000 INFO @ Tue, 02 Aug 2022 19:08:40: 70000000 INFO @ Tue, 02 Aug 2022 19:08:45: 73000000 INFO @ Tue, 02 Aug 2022 19:08:47: 71000000 INFO @ Tue, 02 Aug 2022 19:08:49: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 19:08:49: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 19:08:49: #1 total tags in treatment: 27770008 INFO @ Tue, 02 Aug 2022 19:08:49: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 19:08:49: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 19:08:50: #1 tags after filtering in treatment: 16666299 INFO @ Tue, 02 Aug 2022 19:08:50: #1 Redundant rate of treatment: 0.40 INFO @ Tue, 02 Aug 2022 19:08:50: #1 finished! INFO @ Tue, 02 Aug 2022 19:08:50: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 19:08:50: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 19:08:51: #2 number of paired peaks: 1249 INFO @ Tue, 02 Aug 2022 19:08:51: start model_add_line... INFO @ Tue, 02 Aug 2022 19:08:51: start X-correlation... INFO @ Tue, 02 Aug 2022 19:08:51: end of X-cor INFO @ Tue, 02 Aug 2022 19:08:51: #2 finished! INFO @ Tue, 02 Aug 2022 19:08:51: #2 predicted fragment length is 75 bps INFO @ Tue, 02 Aug 2022 19:08:51: #2 alternative fragment length(s) may be 4,75 bps INFO @ Tue, 02 Aug 2022 19:08:51: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12178838/SRX12178838.10_model.r WARNING @ Tue, 02 Aug 2022 19:08:51: #2 Since the d (75) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 19:08:51: #2 You may need to consider one of the other alternative d(s): 4,75 WARNING @ Tue, 02 Aug 2022 19:08:51: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 19:08:51: #3 Call peaks... INFO @ Tue, 02 Aug 2022 19:08:51: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 19:08:53: 72000000 INFO @ Tue, 02 Aug 2022 19:08:55: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 19:09:00: 73000000 INFO @ Tue, 02 Aug 2022 19:09:04: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 19:09:04: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 19:09:04: #1 total tags in treatment: 27770008 INFO @ Tue, 02 Aug 2022 19:09:04: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 19:09:04: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 19:09:04: #1 tags after filtering in treatment: 16666299 INFO @ Tue, 02 Aug 2022 19:09:04: #1 Redundant rate of treatment: 0.40 INFO @ Tue, 02 Aug 2022 19:09:04: #1 finished! INFO @ Tue, 02 Aug 2022 19:09:04: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 19:09:04: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 19:09:06: #2 number of paired peaks: 1249 INFO @ Tue, 02 Aug 2022 19:09:06: start model_add_line... INFO @ Tue, 02 Aug 2022 19:09:06: start X-correlation... INFO @ Tue, 02 Aug 2022 19:09:06: end of X-cor INFO @ Tue, 02 Aug 2022 19:09:06: #2 finished! INFO @ Tue, 02 Aug 2022 19:09:06: #2 predicted fragment length is 75 bps INFO @ Tue, 02 Aug 2022 19:09:06: #2 alternative fragment length(s) may be 4,75 bps INFO @ Tue, 02 Aug 2022 19:09:06: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12178838/SRX12178838.20_model.r WARNING @ Tue, 02 Aug 2022 19:09:06: #2 Since the d (75) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 19:09:06: #2 You may need to consider one of the other alternative d(s): 4,75 WARNING @ Tue, 02 Aug 2022 19:09:06: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 19:09:06: #3 Call peaks... INFO @ Tue, 02 Aug 2022 19:09:06: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 19:09:12: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12178838/SRX12178838.05_peaks.xls INFO @ Tue, 02 Aug 2022 19:09:13: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12178838/SRX12178838.05_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 19:09:13: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12178838/SRX12178838.05_summits.bed INFO @ Tue, 02 Aug 2022 19:09:13: Done! pass1 - making usageList (15 chroms): 5 millis pass2 - checking and writing primary data (21987 records, 4 fields): 28 millis CompletedMACS2peakCalling INFO @ Tue, 02 Aug 2022 19:09:21: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 19:09:36: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12178838/SRX12178838.10_peaks.xls INFO @ Tue, 02 Aug 2022 19:09:36: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12178838/SRX12178838.10_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 19:09:36: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12178838/SRX12178838.10_summits.bed INFO @ Tue, 02 Aug 2022 19:09:36: Done! pass1 - making usageList (14 chroms): 2 millis pass2 - checking and writing primary data (12447 records, 4 fields): 16 millis CompletedMACS2peakCalling INFO @ Tue, 02 Aug 2022 19:09:37: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 19:09:54: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12178838/SRX12178838.20_peaks.xls INFO @ Tue, 02 Aug 2022 19:09:54: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12178838/SRX12178838.20_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 19:09:54: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12178838/SRX12178838.20_summits.bed INFO @ Tue, 02 Aug 2022 19:09:54: Done! pass1 - making usageList (14 chroms): 1 millis pass2 - checking and writing primary data (3013 records, 4 fields): 6 millis CompletedMACS2peakCalling